RNA id: XM_026945208.2


Basic Information

Item Value
RNA id XM_026945208.2
length 2811
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC113545730
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2714012 ~ 2732151 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTTTAGTGACGGTTTGCTTTGCTGAATTCAGGGACGCATTTTAGAGACGTGTAAATGAAATgcggaaaaataaatcaagggaatggtCAATTAAATTATGTcgtattattaaattatatgatGAATAATGAAGGAAGCAGTGAGGAGTTTGTTTACAGTGACAGTAtgcgtaactaggcaacaacgCTCTCTTCCGGTGCATGACGTGTTAGCTAGTTAGTCCCGGTTCTTGCATACTCTTGTGCTAAACACGCAAAAGCGCCCTTTCGCACCGTAAACGTAGGTGAAGTGAGACGCTGCGTGTTGTTTTCCTCGCCAGCATTCCGCTAGGTCCCGCCCCTCCTGCGCGGGGATTGGCTAGTGGCACGGGTTGACATGGTGATCGCCCTGTTGGCTGTGTGAGtcactaaccaatcagattgcaggGAGCGAGAGCGGTCGGAATGCGGATGGGGAAAAATGAGCTCGAGGCTCGATACCAAAATAGACGCTTTCCGGAGGTTTAAACTCAGTGATCCGACAGTTTCTTTGCTTGTATTTTGATAGATTGATCCATAACGGAGATGTTagactacatttaaaaaagttaatgaCTTTTAACGGGACTTGGGAGTTAAACATGAAGCCGCtcggtgtgtggtgtgtttgtgctctgctgctgtgctgctggtGCTCTTCCTCAGCCGCGCGTGCCGTATTTCCTGCCCCACAGAATGTCACCATTCAGACGCTCAACATGAATTATGTGCTGAAGTGGGATTGGGATCCGGATCAGGCACGAGACAGCGCGCACAGCGTTACTTTCACTGCGCAGTATCTGGCGATGTTTAAGACGAAAAagcccaagaacaagcaggactGGAAGTCAGTGTGCGAGTCAACGCCTGAACACGTCTGCGATTTTTCCTCAGTGCAGCTGCATTATCTCGGCATGTGGATGCTGCGTGTGAGGGCTCAAAGTGGCAAAAACGTTTCATCCTGGGTCATGAAGGAGTTCTGTCCCGACAGAGATGCTGTCATCGGGCCGCCCTCTGCAGTGAACATCACCCCTGTTATTGGCCTGCTGCAGGTTGCCATCTCTGACCCTCTGACCATCACCAATGGCTCCATGAAGGAATGGCTACCCAATATGTACTACTTCATACAGTACTGCAAAAAGAGCTCATCAGCAcagCCTAATAATCTAACAAGTGCCAATAATCTGGTGGTTCTGCCTGAGCTGGAGAGCTGGACATGGTACTGTGTGCGAGTGCAGTCCAGGGATGACTATTACAAGAAGACCAGTGTTTTCAGTCCCACCtactgcacacagacagacgGTCAAACCCCATCCTGGCAGATTGTTCTGTACTTCCTGTTGTCGCTGGCGCTGAGTTTCCTGGTGCTGGTGGGGCTCTTCATGTGCACCTTCAGAGTGGTGAAGGTAGTCAAGAGCACCTTCTTCCCCTCGGTCCCGCTGCCTGCACCCATCCAGGAGTACCTGTGTGACTCGGGCAGCTCAGACACGCCACGCTTGTTGAGCACTGAGCAGGAGCTGGAGAACTGCTGTGACACGCTGGATCTTCTGACCCCAGATCCTGAGGTCACTGAGGTCACCGAGGTCATCTTGGAGGTTCACCTGCCACCTGAGAGCTCGCAGCAAAGTGGCAGGACACGCAGCCGACACAGCAGCTGCGATTCCGGTGTTTATTCCACAGAGGGCTCAGGCCCTAGGCAGAGCGAGCTCGGAGAAATGAAGATGGAAAAACTGGGAAGAAAGATACGAGTTGAGGAGCTGGACGAAGGAGTTCAAGACGTGAGCGTCTGATTTGTCCAAAACGAGAACGGCCTCGAGCTGGCTTTCATGTTCGGTTTGTGCCGCAATCTCTTCCCCACCTGCTTCCTGCCGAGACATAAAAAGACTCGCAAACAAACTCCCTGTTACAAGGGAGGGTTAGAATGAGCTGATCTCTCTGCAAGTCTGTGGCGTAAGAGCAGTTACTGCAAACTTTTTCATATCAAGTTATAAGAAAAGACACATATGCCATCCATCCTTAACTTTTCATACCAGTTTAAAAGACTGTCACCTTAACACGTTACATTTTCTTCCAGCAATTACTTCTATTACTCTACAACACATTACTAATGAACAAATAGACGAAGTAGATGGCACAAAAGGCagaaaaatggcattaaaaatcaaaaatgttgattaaaattaaaaatttgtaaTGTGAAGGACAGAACTATTTGTTGCTTATAAACAGTTAAATCTGTTGAGCCATGATGTCAAGAACTGTCTGTTCTGAAAATGCTCTCTTACTGTCTAAAATATATAGACTTTAAGAACATTTAACTTTTGAATGAAAATTATGTGATACCTTTATGTTTCTCAGGTTCTTGTGTATTTGTAGCTGGGTTTAGTCATTGTGCTTGACAATTGTTAAGGCTCATTTTAATATGATTCTTATAGAATCTGATGTTATTAACATCATAGATTACTTTATTCActtgcttttctttccttctgtttcAAAGGTCATCTAAAAGCACCATAAGGCACTGACTCTGTTTTCTCTCAAACTAACTTGTACACTTGTGACAACTTGTACACATATATaccttttaaaacatgttttactgtgtgGATTATTGAAAGCTGTCAGAACTGACTGGGTCCATTTTTTCTCCTGCATAGTAAGACAGtataatcaataaatacatttttcctGCAATGCCTCGAGGGTCACCAAGGGTCGAGGTCATTTTGTTGACCATGATCATTTTTTTGCTGGAATGTAAAATTAAAGTGCAGAAAACAGAACTCGCA

Function

GO: NA

KEGG:

id description
K05130 IFNAR1; interferon receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90626 lncRNA downstream 154860 2556506 ~ 2559152 (-) True G76325
TU90634 lncRNA downstream 183020 2530654 ~ 2530992 (-) True G76333
TU90329 lncRNA downstream 263063 2449719 ~ 2450949 (-) True G76093
TU90288 lncRNA downstream 413072 2300721 ~ 2300940 (-) True G76060
TU90277 lncRNA downstream 439373 2271867 ~ 2274639 (-) True G76057
XR_004578280.1 lncRNA upstream 161225 2893376 ~ 2897204 (-) True LOC117597440
TU90707 lncRNA upstream 182249 2914400 ~ 2917047 (-) True G76400
TU90778 lncRNA upstream 203930 2936081 ~ 2936563 (-) True G76455
TU90786 lncRNA upstream 233115 2965266 ~ 2966533 (-) True G76462
TU90785 lncRNA upstream 233244 2965395 ~ 2966533 (-) False G76462
XM_026945215.2 mRNA downstream 1734 2704360 ~ 2712278 (-) True LOC113545737
XM_026945224.2 mRNA downstream 1734 2706329 ~ 2712278 (-) False LOC113545737
XM_026945240.2 mRNA downstream 15256 2684508 ~ 2698756 (-) True ifngr2
XM_034304837.1 mRNA downstream 33112 2666856 ~ 2680900 (-) True il1rl1
XM_034304836.1 mRNA downstream 35881 2666856 ~ 2678131 (-) False il1rl1
XM_026938245.2 mRNA upstream 2033 2734184 ~ 2743215 (-) True crfb4
XM_034304181.1 mRNA upstream 2034 2734185 ~ 2743220 (-) False crfb4
XM_026938266.2 mRNA upstream 13185 2745336 ~ 2760206 (-) False LOC113541336
XM_026938275.2 mRNA upstream 15409 2747560 ~ 2756225 (-) False LOC113541336
XM_026938258.2 mRNA upstream 15419 2747570 ~ 2760205 (-) True LOC113541336
TU90190 other downstream 664627 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 910367 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 1039439 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 1039827 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 1051403 1662520 ~ 1662609 (-) True trnar-ucu_6
XR_004578243.1 other upstream 70736 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 72397 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 207170 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1081328 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2107809 4839960 ~ 4844879 (-) True G77283

Expression Profile