RNA id: XM_026945215.2


Basic Information

Item Value
RNA id XM_026945215.2
length 1778
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC113545737
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2704360 ~ 2712278 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGGTGCACATCAGTTGCAATTCTACCAGACTGTGTTTCCTGTAAACCACATGCACATGATGCCGGTGTGAAATGATCATCTGTGAGCAGGAATGTCACTGCACCTCGACCTCAGGCTCACTCTGCTTCTCATAATGACTGTCTCGGCCTCTCTGCCAGgcccacatgatgtaaaaatgaTTGCAGTGGACATGGACTACATGCTGCAGTGGGAATGGAATTACACACAGCTGGAAGATCCAGTCACCTTCACCTCTGATTATGTCTTCTGGGAAGCTCAAGACGATGAGGGATCATATAAGCGGGCGTGTAAAGGTTCCAGGGAGCGTCAGTGTGATTTCACACACTGTAAGCTGCCTTTTTCAGGAACATTTCTGATTAGAGTCAGAGCAGAGGCTGGGCTCCAATGCTCCAACTGGACGCAGATGAGGTTCACACCTGATgaggatgTGCTGTTAGCGTCACCCAGCAGAGTGAATGTGAAAGCAGACGTAGACGGGTTAACTCTTATGATATCCAAGTCAGTCATGAGAGACGTGATGAAGCTGCAATACAGGGTACAATACTGGGAGAGGCTTAAACCTGAACAGAAACACGTGGAAGTGTATGACAGTCCACATGCTCCACTGAGCTCACTGAAATCCTGGACTGAATACTGTGTGCAAGTTAGTGTCTTCAGTCTGGATTATGAGAAGAGCAGCAATTACACATCTCCGCAGTGTGTGTACACAACAGGTCGCCCTTTGGTTTGGCTGAGAATTCTCTCTGTGCTGTGCAGTATTCCTGTTTTAGGAGCTTTTTTATACATATGTCACAAATTCAGAAGGAAATCCTCAGTATATACAGCACCTGAGAGCATACTAGGGTTTCCATCTGTTCCCTTGCTCCTAGACGCACAGGAAGAGTGTTGCACAGTAGCACTTGTGATCACACCTGCCATACAgccgacacacacactgaaggaagagcaggaacaggaacacACACCAGAACTCCAGGCTCCAGAGTCCATATGCCACTGGAGTGATGGTTCTGTGCAGGACTCAGGCTTCAGCTCTGGACGAGCGAGTGGATCAGATATAAAGAGCTCTAGTGAATGTCTTAACATCTGATGAAATGTAGTAGATACTGTGAAATCAGGAAAGAGGTGAAAAACAGAAGCCCTCTGGCACCCTGGCAACAGACACTATAAGTTCATGGATATCTGGGAAGAGTGCAGGCTGACACATGCTAACACGCCACAGGGCAGGTGAACGCATTTGAAGTACATGCAAAATTCTCCCCATCCATATAGATGAGCTCGCAGAGGATTGTCTGGACTTGCTGTGATTGACCCAGTGAGCACGGCTAGTTATACTCTCACGGATTCCTGACCGTGGACGTCTGTGGGCATCGTCAGGGTTCAAAAGATATGGCACAGTGACATTGCAGCAATTGCTGCGTTATACCACGCACTCTTCAAATAGTAATATCAGTAGCATAGTGATTGGATAATGAAAAAACAGATTCACCAAGTGAAGACCAATGGTGGCTAAGGGTGATAAAATATGCCAGTGTTACACCTAGTAAGTTAATTTGTGCATGATTGCTAAGTTGTCCTCTTGGTGGTTATTagcaaatatataaacatatgatATAAAGTATATTATAAAGGGGAAGAGCCTTTATGTTTACTTTTacaacagctttatttatttagtatacccattcattcagttatatttattcagtgtggcagcagtgcagtgtaaaaaatcatgcagatacagaccagcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90626 lncRNA downstream 145208 2556506 ~ 2559152 (-) True G76325
TU90634 lncRNA downstream 173368 2530654 ~ 2530992 (-) True G76333
TU90329 lncRNA downstream 253411 2449719 ~ 2450949 (-) True G76093
TU90288 lncRNA downstream 403420 2300721 ~ 2300940 (-) True G76060
TU90277 lncRNA downstream 429721 2271867 ~ 2274639 (-) True G76057
XR_004578280.1 lncRNA upstream 181098 2893376 ~ 2897204 (-) True LOC117597440
TU90707 lncRNA upstream 202122 2914400 ~ 2917047 (-) True G76400
TU90778 lncRNA upstream 223803 2936081 ~ 2936563 (-) True G76455
TU90786 lncRNA upstream 252988 2965266 ~ 2966533 (-) True G76462
TU90785 lncRNA upstream 253117 2965395 ~ 2966533 (-) False G76462
XM_026945240.2 mRNA downstream 5604 2684508 ~ 2698756 (-) True ifngr2
XM_034304837.1 mRNA downstream 23460 2666856 ~ 2680900 (-) True il1rl1
XM_034304836.1 mRNA downstream 26229 2666856 ~ 2678131 (-) False il1rl1
XM_034304201.1 mRNA downstream 181975 2483030 ~ 2522385 (-) True LOC113540058
XM_026936246.2 mRNA downstream 181977 2481594 ~ 2522383 (-) False LOC113540058
XM_026945208.2 mRNA upstream 1734 2714012 ~ 2732151 (-) True LOC113545730
XM_026938245.2 mRNA upstream 21906 2734184 ~ 2743215 (-) True crfb4
XM_034304181.1 mRNA upstream 21907 2734185 ~ 2743220 (-) False crfb4
XM_026938266.2 mRNA upstream 33058 2745336 ~ 2760206 (-) False LOC113541336
XM_026938275.2 mRNA upstream 35282 2747560 ~ 2756225 (-) False LOC113541336
TU90190 other downstream 654975 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 900715 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 1029787 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 1030175 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 1041751 1662520 ~ 1662609 (-) True trnar-ucu_6
XR_004578243.1 other upstream 90609 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 92270 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 227043 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1101201 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2127682 4839960 ~ 4844879 (-) True G77283

Expression Profile