RNA id: XM_026947133.2


Basic Information

Item Value
RNA id XM_026947133.2
length 2649
RNA type mRNA
GC content 0.36
exon number 2
gene id LOC113546994
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2069547 ~ 2080413 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCAGCTGGCAGTTTCTCGAAGAATCCCTGACCGGACATCCTTTGGCTTTTGGTGTTACTGGGTTTAACGGCACTTTGCCGCCGTCTAGAGCTTCTACGGTGCGATGTATAAGTTGAGTGTTTGTGCTTACAGTTTCTGTTCCTACTCACCTATCACAAGAGGACATAAACACCTGACGCTTCTCACTTGAGTCACGTTGACATGCAGTCTTGTGACTGACTGACCACAGACTCAGTAGGGAATTGAACTTTGAAGGacaattttaacattattaaagaGGTTTTTCTCAATTAATGTCACTAAACTTTACACAGCAATGATGGGAACCATGGCACAACAGCTCCTAGGCTTCTTTCTGGGTCTCCTGGGCCTGGTCGGGACTCTGACATCAACGGTGCTTCCTCACTGGCGCCAAACCGCTTATTTTAGCACCAATTTTATCACCGCTTCATACTATATGAAAGGTCTATGGATGGAGTGTGTTAGCCACACAGCTGGCATTTATCAGTGTGAATTCCATCGATCAATGCTTTCTCTGCCCAAAGATCTGCTGGCTGCCCGGATTTTAATGGTGCTCTCTTGCACCACTTCAATTTTGGCTGCCATACTTTCAGCTGTGGGCATGAAATGTACCCGATGCGCCTACCAATGCCATGCCAAGGGCTCCATAGCTGTGACTGGAGGTTCATGCTTTGTCCTGGCTGGCCTCTTCTGCCTTATCACTACATCCTGGACAACCTGTGATGTCATCAGAGACGCATATAATCCATTTTCTACTTCTGGGATGAAATATGAGATCGGCCTGGCTGTCTACATCTCTTTCTCATCAGCTATTTTCAGTATTTGTGGAGGTGGGATGCTTTGTGTGGCATCATGGGATGTAAGAAATTATTTAAGCCACAAGGTGGCAGACCCACAGGTACCAGGCCCAAATAAATGTCATATCCCAGCCTATCAAGCAAACACTGCCTTTGAAAGTGATCattcatcatcaccaaattttTCCTCCAGCAGTGCTTATAGGTTAAGTGATAGCATTAGTGAAAGTAGTATTAAAAGTAAAACTTAAAGTAAAAGTCCAGTAAGAAGGGAAACTTTTGTGCAAAATTAAACAGCACTcagtaatactttttttttttttgagtgaaatGGCAGTGAATATGGACATATCCGCAAGGCCACAAGCTTTATTCTTTAATCTGAACTTTATTCTGAAATTGCAGAATAAGGTCTAATAcaattttaacacttttattctTTCGGTGACAGCAAGAGAaaacatacctttttttttattttactacaaTAGCTTTCTATAAACTAAAATATACGGCACACTAAagaaagaaacctttttttatttaagaataagaaaaaaccTCTAATAATTATTAAGTTCTAATGGCTAAAACTCCCAAGTCTATAGGATGTTGGTGATAGAAACTACTTATTATTTATCATGTGGTTGTTTAGCAACTAGGGATGTAATGATACagattattgtattgtatcattCAATATGAGGCTCTTTATTCAATGGGTCTGCATAACAGTATGTAACACAATTTTTGTTCCTGATGCAAGATGCAAATTCGCCCGTTTTCTCAATGAAAATaggtaaatttcaaaataccaaTGTCATAGTCACAAAACCAAAGTTTGATGGGAATAATAGccattttctatacttttgAAGTAAATAATTAGGAAGTAATTAGGAAATAAACCCAGGAACAACAAAATAAAGTTGCATAGTAATTAATAGATTTGTTAGATAGAGTGATAGAATACTTTACTGAACCCCTTTtgttgcagcagcacaataaaCAACAGAAATTACTTAActaaattagaataaaataagaCGCTAAGTAGCAACAAAAGTAAGTAATGTGGTTGTAGTGCAGGTGATGATCATAAGGTGACAGTCATTAGAACATGTCCATGAGgaagagaataaataataataaatacagtgggTTGGAAtgtgagggggaaaaacaaTGTTGTTATACAGCTAGCACAGGACGAGTCATACAGTCTGATAGAAGCCGGTATAAAAGACCTCCTCTTTGAAACAGTAGCATCCTCTTAGTCTCGAATCAGGTGAAGTTATGgaggttttaaaaaagtttttccaAAGCACACTGATTTCACGAGCCAATATGCTAGCATACTAGCATGTGTAGTGTTGGCAAGAGTGCTAAGGATTAATTAgttgtgtttaattttgttaaattctAACGCacaatttttctttcattatatgCTGTTAAGATCATGCAAACTGTGAATAGATCATGCAAactgtgtcattattaagtttAAATTATCGTACTTTTACAATATTGCATATTTTCatacagtattatattatattgaatttgaattttgtgcatcattacacccctagtagCAACCACACATTTTATGcagtcaaaaacaaaaaactactgTAATCATTCCACAAATTTATATAGatctaaatatataataatatagattTAAATAGATCCATgaaatttaatacaatttacCTATTTATGTTTATTCCAGTTTCAACATTGTTGCTGAATGAGTGAAGGAAATATTACAAATGAACTAATTCTAATGATATTCTTTGTGggaattttaataaatcaaCAAA

Function

GO:

id name namespace
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90126 lncRNA downstream 123371 1945973 ~ 1946176 (-) True G75947
TU90099 lncRNA downstream 144294 1913131 ~ 1925253 (-) True G75926
TU90097 lncRNA downstream 152109 1911196 ~ 1917438 (-) True G75925
TU90101 lncRNA downstream 154818 1914017 ~ 1914729 (-) True G75927
TU90018 lncRNA downstream 195878 1849237 ~ 1873669 (-) False G75880
TU90223 lncRNA upstream 33780 2114190 ~ 2114599 (-) True G76013
TU90277 lncRNA upstream 191457 2271867 ~ 2274639 (-) True G76057
TU90288 lncRNA upstream 220311 2300721 ~ 2300940 (-) True G76060
TU90329 lncRNA upstream 369309 2449719 ~ 2450949 (-) True G76093
TU90634 lncRNA upstream 450244 2530654 ~ 2530992 (-) True G76333
XM_034304747.1 mRNA downstream 5249 2047779 ~ 2064298 (-) False LOC113547075
XM_026947281.2 mRNA downstream 5249 2047779 ~ 2064298 (-) True LOC113547075
XM_026947298.2 mRNA downstream 71474 1988540 ~ 1998073 (-) True lims2
XM_026947297.2 mRNA downstream 83658 1950132 ~ 1985889 (-) False ranbp2
XM_026936339.2 mRNA upstream 154400 2234810 ~ 2246620 (-) False LOC113540088
XM_026936346.2 mRNA upstream 154400 2234810 ~ 2246615 (-) False LOC113540088
XM_034304219.1 mRNA upstream 154400 2234810 ~ 2246609 (-) False LOC113540088
XM_034304213.1 mRNA upstream 154400 2234810 ~ 2246609 (-) False LOC113540088
XM_034304212.1 mRNA upstream 154400 2234810 ~ 2246609 (-) False LOC113540088
TU90190 other downstream 20162 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 265902 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 394974 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 395362 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 406938 1662520 ~ 1662609 (-) True trnar-ucu_6
XR_004578243.1 other upstream 722477 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 724138 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 858911 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1733069 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2759550 4839960 ~ 4844879 (-) True G77283

Expression Profile