RNA id: XM_026947296.2


Basic Information

Item Value
RNA id XM_026947296.2
length 9909
RNA type mRNA
GC content 0.44
exon number 28
gene id ranbp2
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1950132 ~ 1986039 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGGCGAAGTAAGGCGGACGTTGAACGCTACATTTCTTCAGTAGAGAGCCTCTCTCCTTCTCAAAAAGAGAAACCGGTGAAAGgatttttatttgcaaaattatattttgaggCCAAGGAGTATGAACTTGCCAAAAGACATGTATCAGCATATTTAACAGTTCAGGTCAGGGATCCCAAAGCACATCGATTCCTTGGTCAACTTTATGAACTCGAAGGTGAAATTGAAAAAGCTGTTGGATGTTACAAGCGCTCGGTGGATCTGAACCCAGCCCAGCGTGACCTGGTTCTGAAAGTAGCTGAGCTGCTGTGCAGTAAGCCGGAGCTGGACAGCAGGGCAGAATTCTGGGTGGAGAAGGCTGCCAAGCTTTTGCCGGGTCACCCTGCAGTCTTCGACCTAAGGGAGAAACTGCTGAGTGCGCAGGGGCAGCAAGGCTGGAATCAGCTTTATGACCTGCTGCAATCTGAGCTCCAGCTGCGCCCTTCTGATGCCCACGTCAACCGCAGACTTGTGCAGCTCTACTGCTTGGATGGACGGTTGGAAGAAGCAGCTAAGCACTGCCTGGCTGTGGAAAGCACTGGTGTCTTAAGACACAGCCTAGACTGGTACACTGCTGTTGTCCACACACTTCAGGAATACGTGGCTCAACCAAGTGTATCTTCTAATGAGAAGGCATGTCGCAAGTTCCAAAAGGAGCTCTTGCTGGCTCACTGTAATCTGCTGAGGCTCACACTTGCTGAAAAAGATTGCAGGGAAAGCGTGAATGCACTTCAGACTTTTGACCGTGCTATGCAGTGTTTAAAGAACACTGCCTCTAAAGCTATGGATGAGCTCCTGGAGGTGTTCACAGAAATGAGAGCTCATCTGTATCTTCATGCTGGGACcctgctgctgaagatggccATGGAAAAAGAACAGCAGTGGAGAGCAGTTGTTGATTTAGCAGCCCTCTGTTACCTTCTGGCTTATCAGGTTCCAAGACCAAAGACAAAGTCTGAGAAAGGTGAACGTTCATCACCAAAACCTCTAGAGTCATTAGCCTGTTATCGTCAGAGCCAAGCAGGCCACATGCTGCTGAATCTAAACCAGGAGATGGAGCACTTTGTGaaggaggtggtggaggtgttTGGGAACAGAAGTGGGCAGGACACATTGTTTGAGACGCTTTTCAGTACACAAGCCCCTGTGGATCTCTCGTTCATTGGAAATGACAACATCTCCAACATCAGCACGCAGTCACCGGACATACAAGAGCTGGCTAAGTGGGACAGTGGTTCCATCTTGCACTGTGGGGATTTACAACACCTGACATGGCTGGGATTGCAATGGTCAATGATGGGCCAGAGACCTGCAGTGAAAGACTGGCTTAAGCAGCTCTTTCCTCGTCTCACTCTGGAGACATTCAAACTGGACACCAACACTCCAGAGTCAATCTGTCTGCTTGACCTTGAGGTGTTTCTATGTGGTGTGGTATTCACAAGTCACACTCAGCTGCAAGAAACGGCAAAGATTTCTGCTACTTCGCAGCTGCATGAGCCAAGATGTTTACCTTTGCAACTTATGAAACGCTTGtactcagagagacagagagagtggtGGGATGCAGTCTATAGCCTCATTCATAAAAAAGCAGTACCCAATACATCTGCTAAACTGCGAATGATTGTCCAACATGGACTGAACACACTGCGAGCAAGAGAGAAACATGGTCTTCAGCCTGTGCTGCTTATCCACTGGGCCAAACATCTCAGTATAATGGGTGATGGTGTTAACTCCTACTATGACCAGAAAGAATATGTTGGCCGTAGTGTGCACTACTGGAATGTTGTGCTCCCCTTGCTTGAGAAAATTGAGAAGAGACGTAGCATTCCTGAACCTCTCGATCcattattcatgcattttgttAGTAAGGACATACAGGTTTCTGAAATTAAAGGCTATGAAGAGGAGGCTATGATAGCATTCGCTACTCTTCTTGACATTGAGGGCAAAACTGATCAGGCTATCTTGAAGCTTGAGAAGCTCAACTGCATCTCTTCCCACTGGCATCTTGCTCGGATCTATCAGAGACTCTCTGAGGAGGCAGGAAATGGAGTTGAGGAAACTCAAGACATGTGCATCAACTTTCTCCAGCAGTTCAGGAAGTACTTATCAAAGGTCTACCATGCCGGTGCAGATGACGTGGAGAAGCTGCCTGTGTCAATGGAGGAAATTATGGACTTGCTCAATGATGTCAATCAGCAGCTTGGAGAGAGTGGAGAGGCTGTGGATGGAGTTCATGAAGGACATCCAATGACTTCAAGCCCACGATCACTCACAGAACCAGCTGTGGCTGCTTCTCATAAATTCTCCTCTCCAGCCAAAAGTGTACTCTCTCCCTCCAAGAGATCAGTgTTTTCTCCCAAAACACCCCCTCACTGGGTGGAGGATCAGAAGTCACTTTTGCAGATGCTCTGTCAACAAGTCGAGGCCTTGAAGAATGAGGTTCATGATCTGAGGCACAATTCATCTGGATCAACAGAGTCCCCATTTCACAGAGTGTATGGAGGGAATTACGCAGCAGATGCATTTCAGGAACCCTTTTCAGCGGCGCAGTCATTCCATGGAGTGCCACTTACTGTTGCCACTACAGGTCCTTCAGTATACTACAACCAGTCCCCTGCATACAATTCACAGTACCTTCTTCGAACTGCTGCTAATGTAACACCATCCAAGGCACCTGTCTATGGAATGAATCGTCTCCCTCAGCCGCATATGTATGCCTACCagcaaccaacacacacaccccctcttCAAACAGCAGCATGCATGTACCCTCAAGATCAGGTTTTTGGTACCTCTATCAGGTTTGAGTCACCAGCTACAAGCTTGCTGTCCCCTTACAATGAAGAATACTGCAGTCATAATGTTTCTCAACCATCTACCAATCCAACGTTGCCAGAGCCTGGGTACTTCACTAAGCCACCTGTAATACCTGCCCAGTCCTTTAAGAGCAGTGAAGGCAAGTCAGTGGACTTAAAGATGAGCTTTGGCCAGCAAATTCCAGTTGAAACTTCTAAGGTTGGGTCTGGAATGGCCTCCCAAACGACTCCAACAGCAGCTGCTTTCAAGttcaattcaaatttcaaatctAATGATGGTGACTTTACTTTCTCATCTGCAGAGGTGAAAAATAACAGTGAAAGTCTTTTGGGGCTTCTGACTTCAGATATTCCTCCCAGAACCGAAGGCCACTCGGCCCTAAAGTCTCAGTCGCAAGACCCAACACACAGCCATAGTGGGGTCTTTACATTTGGGAGTAAAAATGCTTTAGGGTTTTCATTTGTTGATGGGGCACAGGGTAAAACAACTCTTTTTGGAAAATCTGACCAAGCATTTGGCTTTACAAATATGACCAAGCCAGTGACTGGGGAGGTAAGCGATGAGAAATGTGTTGAAAGTGATGACAGCACCCATGTtgaagaggatgaggatggtCCGCATTTTGAACCCATTGTTCCTCTGCCCAATAAGATTGATGTAAAAActggggaggaggaggaagaagaaatgTTCTGCAACAGAGCAAAATTGTTCCGTTTTGAGGCAGAAACAaaagaatggaaagaaagaggCATTGGATCTATCAAAATCCTAAAGCACAAAACATCAGGTAAATATCGATTGTTGATGAGAAGAGAACAAGTTTTGAAAATATGTGCGAATCACTACATCACTGCAGACATGGTTCTGAAACCAAATGCTGGGTCTGATAAATCATGGGTATGGTATGCTATGGACTATGCTGATGAAATGCCGAAGACAGAACAGCTGGCTATTCGTTTTAAGACTGCAGATGAAGCAGCTTTATTCAAACAAAAATTTGAGGAAGCTCAGAGAGCTATTGTTAAACATCCAAAAATGCAAGGTCAACTGAAGGAAAATGACTCCAAGTCTTCTAGCTTTGAGGAATCTAGCAAAAATATTGATCTGAAGACCCTTTTTGCAAAGAAGGAAGGTGAATGGGATTGTAATGTCTGCGCTGTAAGAAATGACTCCTCATCTAAAGAATGTGTTGCTTGTAGCAGTCCGAATCCTTGTGGTGATTCAAAACCTGAAACTAAACCAGCTGAGGGATTTAAAAGTGCTCCTGCTCCCCCCTCAACAGGAGCCTTTACTTTTGGACTTGGTGGAAGTTCTAaggatgccagtgatgccagctTCAAGGCATTTGGATCCCAAATTCCCTTTTCCTTTaaatttggaacacagccatcTGTTACTCCATCCAGTCAGCGTGACGCAAAGTCTGGTGAATTGGAAGCGTCAGCAGATCATTCTATATCGGAGCAAAGttcaaactcctctgtccaaaAATTCAGTAGCTCTTCAAGTATTCCGCCAAGTTTTTCGTTTGGTTCTGGATTTGGCTCTCAGTTTGTTAAGCAGCCAGGACAGTGGGATTGTTCCACATGTGCAGTGAGGAATGAGGCTTCTGCAAGCATTTGTGTTGCATGTCAAACCTTAAATTCTTCATCCAAAACCACTGCTGCTTCAGAAACTAAAAAACAGTCTATGAGTTTGCAAATTCCAAGTCAGTTGAAGGAAAATGACTCAAAGCCTTCTACCTTTGTGGattctaataaaaatatagatcTGAAAACCCTTTTTGCTAAGAAGGAAGGTGAATGGGATTGTAATGTCTGCGCTGTAAGAAATGACTCCTCATCTAAAGAATGTGTTGCTTGTAGCAGCCCCAATCCTTGTGGTGATTCAAAACCTGAAACTAAACCAGCTGGGGGATTTAAAAGTGCTCATGCTCCTACTTCCTCAACAGGAACGTTTACTTTTGGACTTGGTGGAAGTTCCAAGGATGCCAGTGAGGATGCCAGCCTCAAGGCATTTGGATCCCAAATTCCCTTTTCCTTTaaatttggaacacagccatcTAGTCAGGGTGATGCAAAATTGCAGCAAAGTTCGAATTCCTCTATCCAAAAAGTCAGCAGCTCTTCAAGTATTCCATCAAGTTTTTCATTTGGGTCTGGATTTGGCTCTCAGTTTTGTAAGAAACCAGGACAGTGGGATTGTTCCACATGTGCAGTGAGGAATGAGGCTTCTGCAAGCACTTGTGTTGCATGTCAGACCAAAACCACTACTCCTCCAGAATCTACCAAACAGCCTGCAAGCTCTGTCTGCTCATTTGGATCTGGACTCGATAAGTTTGTCAAAAAAGCAGGTCAGTGGGATTGTGATACCTGCCTAGTCAGGAATGAGGCAGCTGCAAAAAGCTGTATTTCTTGTAATGCTCCATGTAGCAGCAGAAAAAATGAAGCACAATGGGATTGTGATACCTGTCTAGTTAGAAATGAAGGAACATCTAGTCATTGTGTGGCCTGCCAGAAACCTAAGCCAAATGCAGACAGCACTAAGGCTGCACCAGCACCCTCCTCCTTTAGCTTTAGTACTGATAGTGAAGCTAACCTTCCTGCAAGTGCACCAACAACTCAAGTTGAAACATCTTCAGGCAGTTCAAAATTCTCTTTTTCAGTGCCAGGGTTAACCAGTGGATTCAAATTTGGTCTTAAGGGGTCTGAATCAAAGCCAGCCAACAGTGGATCTGCCTCAgtatttctgaaaaatattGCTGAACaacacagagaagaagaaaaagaggtctcctcctcatctgtacagtCAGTGAGTAATACTAGCAATGATGACTGTCTGCTGATTACAGGGAAGCAGAATGCATTCAGTTTTGCAGACTTGGCAAAGTCTTCACAAGGTAACTTTCAATTTGGCCAGAAAGATCCCAGTTTTAAAGGCTTTGCAGGGGCTGGTGAGCAACTTTTTACCTCCTTTCTGCAAAGCCAAAAAGCAGATACCTCTGTTGATCAAGAAGAGGAAGATATGTataaaactgaagaaaatgatGATATTCAGTTTGAACCTGTTGTTAAGATGCCTGAGAAAGTTGACCTTGTTACGggagaagaggatgaggaaTGTCTGTACACAATACGTGTTAAGCTTTTCAGGTTTGATAACGAAACTCATCAGTGGAAAGAACGGGGAGTTGGAAACCTAAAACttcttaaaaataatcaaaatggGAGGCTTAGAGTTCTAATGAGACGAGAGCAAGTGCTGAAGGTGTGTGCTAATCACTGGATCACTACTACAATGAATCTAAAGCCCCTTTCTGGCTCAGATCGTGCCTGGGTATGGCTCGCAAATGACTTCTCAGATGGAGATCCCAAGTTAGAACAGTTGGCTGCCAAGTTTAAAACGCCAGAACTTGCAGAAGAGTTTAAGCAAAAGTTTGAGGAGTGTCAACGACTCCTTTTGGACATTCCTCTACAGACCCCTCATAAGCTGGCTAATTCAGACCGAACAGCAAATCTTATACAGAAAGCTGAGGAAATGAAATCTGGTCTTAAGGACCTCAAGTCATTCTTGACTTACGATGGAATGAAAGGCAAGCAGGAGGAAAGCaatgttacagcagcaaatgATATCTCGGCACTCATTATCAAACCCCACAATGAGAGCACTGGACCCACCTTGGAATGGGATAATTACGATTTGCAAGATGATGTTCATGATGAAACTGCTGACACGTCTGTATATGCTTCTCCACTAGCTAGCAGCCCACTACAGAAAAATTTGTTCCGTTTTGGTGAATCGTCTACTGGGTTTAGTTTCAACTTCCAGCCTATTCTTAGTCCCTCAAAATCCCCGGCTAAGCTGAATCAGAGTGGGACATCTGTTGGAACAGACGATGAGCAAGAATTTAATCAAGAAGAGGAAAGAGATGGCCAGTACTTTGAACCAGTCGTTCCAATGCCTGATGTGGTTGAGCTGTTAAATGGAGAAGAGAATGAACAGGTAGTGTTCAGTCACCGAGCAAAGCTGTATCGCTATGATAAGGACCTCAGCCAATGGAAAGAAAGAGGTATAGGAGACATCAAAATTTTACAAAACTATGATACAAAACGCACTAGGCTTGTGATGAGACGTGACCAGGTTCTTAAATTATGTGCAAACCACTGGATAACCTCAGATATGAAACTTGAACTGATGAAAGGAACAGAAAAGGCATGGATCTGGAGTGCTTATGACTTTGCTGAAGGAGAAGGAAAAGTTGAGCAGTTGGCTGTGCGCTTTAAATTGCTGGAGACTGCAAATTCTTTCAAAGAATATTTTGAGAAAGCCAAGGATGCCCAGGAAAAGGAAACCCTTCTTATGACTGCTTCCCCTAGAGAAGTCTTGACCTCCCCAAAATCCCTGTGTGGTAAAGCTGCTATTGAGGTGCTTGAGGAGACAACTAAAGAAAAGACTGAACAGCCTTCTGAAAGCAGTCATGCACCTACAGTGACTCTCAGTCCTCACAGCACCTCTAAAACAGTGGTCTCTCCCCCTAAGTTTGTCTTTGGGACAGACTCTGTGCAGAAAATATTTGGAAGCCCAGTATCCTCTAAACAGATGGTTTCTAGTCCAGCAACAAGTCCTGAAGATCAAGCGTCAGGCAGTGCTTCAAGCTCCAAAACAGCTGAAAGCAAGACGATAACTCCATTCAAAGTACCAGAAAGAGTTTCTTCTGAAAAAACCCATGACGACGTAAGGAATGCTGGCGACAGTTGTGACTCTGATATTGAAATTGTGTTTGAACAGCAACCAACTAAGGAGCAGGCAGAACTTGCCCGAAAGCTAATGCTGCCGCCAACGTTttttatgtacaaaaataaGCCAGGATATGTGAGTGATGATAGTGATGATGAGGATTATGAGACTGCTGTAAGAAATCTGAAAGGAAAACTGTATCCTGATTCTGCCACACCTTGCCCTGCTCAAGTGAGTAGAGATGCAGAGGAACCTGAGTGTATGCTTGTCTGGGAGAAGAAACCGACACTGGAGCAGGAGAGAAAGGCCAAGAGCCTTCAGCTGCCCCGTACCTTCTTCTGTGGTACTAGTAGTGATACAGACACTGAGCCTGACAGGCCAGAGGACTTTGGAACAGAGCTACAAAAGGTCCAGCAAGCTCAGAGTGAAATAAACAGGCAAGAGAAAACCAGTGAGAGCTGCACCGACCAGCCTGCTACAGCTGATAATGGCTGTCCTATTGACCTCTCTACAAAGACCCACGAAGCTGAAACAGCAACAGACTCAAATACCATTCAAGATGCCCCTTCTGCTTTCACATTTGATTCTctaagtacatttacatttgcagaCTTGGCAAagaaatctggggaatttgCCTTTGGAAAAAAAGACTCAAACTTCTCCTGGGCGAACGCTGGGGCAGCAGTCTTTAGCACCACTGCAACAGCTTCCCGaaatgaggatgaagatgaggagggCAGTGATGAAGATGTTTCTAACAATGATATTCACTTTGAGCCCATTGTTTCCTTACCTGAGGTCGAGGTGAAGTCTGGTGAAGAAGATGAGGAGATTCTTTTCAAGCAGAGGGCAAAGCTGTTCAGATGGGATCGTGATTTGAGCCAGTGGAAGGAGCGTGGAGTTGGTGATCTGAAGATCCTCTTCCACCCAGTGAAAAAGTACTACCGTGTCCTGATGAGGCGTGACCAAGTTTTAAAGGTCTGCGCTAACCACACCATCACCAAGGACATTGAACTGAAACCCATGAACACCTCTGCTAACGCACTGGTTTGGACGGCTAACGACTATGCAGAAGGTGACGCCAAGGTGGAGCAGCTTGCTGCCAAATTCAAGACCCCCGAACTCGCTGAATCCTTCAGGAAAACTTTTACAGATTGTCAGAGGTGCATGTCTCAAGTGGACTCAGCCCAGTCTTCTAAAGTCATGGAACTTTCTAGACCAAGCAACCCAGTGGTATTTTTCAGTATAGCTGCTGACGACGAGCCAATCGGCAAGGTCACAATAGAGCTTTTTGCCAACGTCGTCCCTAAAACTGCAGAAAATTTCAGAGCTTTGTGCACTGGAGAGAAAGGATTTGGCTACCGAAATTCCATTTTTCACAGGATCATCCCTGATTTCATGTGTCAGGGTGGTGATATAATCAAACAGGATGGCTCGGGTGGAAAGTGTATCTACGGGGACAAGTTTGAGGATGAGAATTTTGAAGTGCGCCACACAGGCCCAGGTATACTGTCCATGGCCAATCGTGGCAGAGACACAAACAACTCTCAGTTTTTCATCACATTGAAGAAAACGGAGCATTTGGACTTCAAACATGTTGCTTTCGGCATGGTCAAAGACGGCATGGATGTGGTGAAGCAAATGGGAGAGCTGGGCTCTAAGAATGGTGAACCAAGCAAAAAGATAACAGTTGTAGACTGTGGCCAGCTATAGTTCCTTTCTTCATACAttaagtacacttgtgaaagtgtttcatgttgtttgcttttttgtcaCAAGTTTCACATGAGAAATGTGacagagggacaaccaaaggTCTAAACCTAGTTTTGTGGagtgactttttctttttttcccccagtcaAATATTATGGCACTGATGACAGAATAGACCTGCCTAAAGATAAAGAGAATGGTGGTCAGTCACCGACTTACAGAGAATAACCATTATACTGTTGTGTTTCCTGAGGTGACATCATGACAAATAGACATGTTTGTTTAAACAGGTTGTTATGGAGATGAATCTGAAGAATTAGACTAATACAAGCCTAACTTCctgctatttctttttttttttcaagcaaactgcagggggttCATTGGGCTGTATGACAAATATGTAGTGTTGCATGTTTGATTCAGTTACACAGGTGGATTAAACGGCAACAAATTTGGATAATCTTAAACAGaaaactgtgtgtttttactctGTATAGATTTCTGGAAATTGGGCTTTTTACAGCATTGTGAATTCtacattttctgcttttttttgctaatattaAAGGTTGAACAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90126 lncRNA downstream 3956 1945973 ~ 1946176 (-) True G75947
TU90099 lncRNA downstream 24879 1913131 ~ 1925253 (-) True G75926
TU90097 lncRNA downstream 32694 1911196 ~ 1917438 (-) True G75925
TU90101 lncRNA downstream 35403 1914017 ~ 1914729 (-) True G75927
TU90018 lncRNA downstream 76463 1849237 ~ 1873669 (-) False G75880
TU90223 lncRNA upstream 128301 2114190 ~ 2114599 (-) True G76013
TU90277 lncRNA upstream 285978 2271867 ~ 2274639 (-) True G76057
TU90288 lncRNA upstream 314832 2300721 ~ 2300940 (-) True G76060
TU90329 lncRNA upstream 463830 2449719 ~ 2450949 (-) True G76093
TU90634 lncRNA upstream 544765 2530654 ~ 2530992 (-) True G76333
XM_026919622.2 mRNA downstream 78639 1858262 ~ 1871493 (-) True cops8
XM_034304738.1 mRNA downstream 86342 1862153 ~ 1863790 (-) True trim63b
XM_034304840.1 mRNA downstream 203101 1723257 ~ 1747031 (-) True mlphb
XM_026911002.2 mRNA downstream 326083 1615900 ~ 1624049 (-) True med4
XM_026911019.2 mRNA downstream 353653 1591955 ~ 1596479 (-) True htr2aa
XM_026947298.2 mRNA upstream 2651 1988540 ~ 1998073 (-) True lims2
XM_034304747.1 mRNA upstream 61890 2047779 ~ 2064298 (-) False LOC113547075
XM_026947281.2 mRNA upstream 61890 2047779 ~ 2064298 (-) True LOC113547075
XM_034304321.1 mRNA upstream 83658 2069547 ~ 2080413 (-) False LOC113546994
XM_026947133.2 mRNA upstream 83658 2069547 ~ 2080410 (-) False LOC113546994
TU90050 other downstream 146487 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 275559 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 275947 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 287523 1662520 ~ 1662609 (-) True trnar-ucu_6
trnat-agu_7 other downstream 300006 1650053 ~ 1650126 (-) True trnat-agu_7
TU90190 other upstream 63134 2049023 ~ 2049385 (-) False LOC113547075
XR_004578243.1 other upstream 816998 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 818659 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 953432 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1827590 3813479 ~ 3816036 (-) False faima

Expression Profile