RNA id: XM_034304180.1


Basic Information

Item Value
RNA id XM_034304180.1
length 2017
RNA type mRNA
GC content 0.46
exon number 13
gene id rubcnl
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1320263 ~ 1339222 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTATGCAATTCATCCAGTAATCagAATGAGTCTTTTGGGCTCTTGCATTGATTCTAATGGCTGTGCTTCTGCCAATTTCCTGATGCGAGTAAAAAATCAAACTGTGGAAGGCGACCAGGGAAAAAAGACAGACCTCCAACCTCTATTTGGATACATCCCAGATGGACAAGGCTCCATTTCCAGACCTGAAGATGAAGGATGGTACTACCTACCCAGGAGCAGTCCTGTCATATCCCGCCGTGAAGAGACGAAAATGAAGAAATCGCCTTCAAATAATAGAGATTTACATGAACACTCTGATGAAAACTTTCGAAAGGGGGAGGACTTTTTTTGGGTTGGACTTTCCTCTGTTTCAAAAATGCTCCAGAACATTTTCCCAGAAGAACAAACGATTCCTACTCCTTCAGCTCGGAGGACTTCTCAGGTTTTGCTTTTGGATACACACAGCGCTTCAGCAGCTACCAGGGACGAAAAATGTTCTGACAAGCAAAGAAACCTTTCACACGGAACTTCAGAATCCCAATCTTCTTCATGTGAGGAAAGTGATCTTCTAAACACCGGAGCCTCACAACCGGAAAAGGGAACTGGCTTGAACAAATGTCTGATCTCAGGTGCTGAGCACGAAGAGCAAATCTCGGAAGCTTTCTACAGGAACAGTGTGGACCTCGACcaggagaacGCTCATTTTGTAGTGGTGGATATGGTGCTGGAGGTTCTAGAGGCGGCGAAGTGGGCTGTGTCCCAAAAACATTCAGGCTCCTTTTCCTCAACTGACAGTGGCTACGAAGaACTCTGTGACCATAGACTTTCTTCAAACAGGAGTTCCCAGAATTTAGCCCGCAGaTGTTCAGCAGAAATTCTCGCACAGAACTTGCTTGTGGAACTCGAGAGGTGGTGGATTTCCTCAGAAGAGCTGCTACGGGAATTTCCCCTGGCTACTGTCTCCATGGCACCAGGAGGCGAAGCCAGCTTGAGTGACGAGATCCGTCAGAAAAGCCGAATGAGGGGGACACTGCTGTGGACTCCACCCCAATTTCAGATAATATCCAGCGTGAATCCGACACAGAGGCGCAGTGACGTCATTGCCTCTCAGCAGTTCCTTTGTGCTGGCTGTGGGACAGAAATCGAACCACGGTACATGAAGAGGTTGCGATACTGTGACTACCTGGGCAAGTATTTTTGCGATGGTTGCCACGGCGGTGGCGAAGCCATAATCCCAGCGCGTGTTTTGAGCCACTGGGATTTTGGACGATACCCAGTGTGCCAGTTTTCCAAGCAGCTACTGGAATCCATTTGGGAAAAGCCACTGTTTAAGATCACCGATGTAGCTAAGAACCTGTACTCCCAGGCCAAGGAGCTGCAGAAATTCAAGGAGATCCAGGAGCAGCTGATCTCCATTAAGAAGCTGCTAAGAGCATGCAGACTATCTGAAGGAGTCCTGGAGGAGTTCCAGCAGCTTCCATCCCACCTGAGCGACGAGCTCCACGTTTATGCCATGGATGACCTCGTCAAGATCAAAAGGGGTCATCTTCTTACCACGGCAAAGGCAGTGATGCGTTCTGCGACAAACCACGTGGAGGCCTGTGAGctatGCCAGGCAAAAGGCTTTATCTGTGAGTTCTGCCGTGGAAAGGATGTGCTCTTCCCCTTCCAGACAGACATCTGCACACGCTGTCAAGagtGTAGAGCTTGTTTCCACACTTTGTGTTTCCAAGACGAAGCGTGTCCTAAGTGCGCCCGACTCCAGATCAGAAGAGCTGCCAGGAGAAATTAGGaaattatgataataataataataataaaaataaaaaagtcattaaatgCTGCTCAATTACTTACCAATGTACAGCAGAATCCTTATGAAGTTTATACTTGGATGCTATTGTCTTGTTTTAATAACTTGGGGAAGCCTTgaaatttttaatgaaactactttcttgttttttctgtctGCATATGACTGAATACTGTGTATTTGTAGAAAATGCcatgcattaaaaaatgtatattttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89783 lncRNA downstream 13910 1305989 ~ 1306353 (-) True G75687
TU89753 lncRNA downstream 66167 1237221 ~ 1254096 (-) True G75663
TU89722 lncRNA downstream 104559 1209385 ~ 1215704 (-) True G75636
TU89729 lncRNA downstream 150570 1169459 ~ 1169693 (-) True G75640
TU89714 lncRNA downstream 180060 1135626 ~ 1140203 (-) True G75628
TU89812 lncRNA upstream 27160 1366382 ~ 1367066 (-) True G75713
TU89818 lncRNA upstream 36164 1375386 ~ 1377189 (-) True G75719
TU89826 lncRNA upstream 45636 1384858 ~ 1385522 (-) True G75727
TU89831 lncRNA upstream 53557 1392779 ~ 1395138 (-) True G75732
TU89834 lncRNA upstream 57075 1396297 ~ 1396522 (-) True G75734
XM_034304700.1 mRNA downstream 4930 1306954 ~ 1315333 (-) True dhrs12
XM_026911029.2 mRNA downstream 4933 1306955 ~ 1315330 (-) False dhrs12
XM_034304768.1 mRNA downstream 38261 1271407 ~ 1282002 (-) True ints6
XM_034304769.1 mRNA downstream 38843 1271407 ~ 1281420 (-) False ints6
XM_026911023.2 mRNA downstream 132764 1170709 ~ 1187499 (-) True lcp1
XM_026910995.2 mRNA upstream 57462 1396684 ~ 1404791 (-) True esd
XM_026911012.2 mRNA upstream 190603 1529825 ~ 1552435 (-) True si:dkey-230p4.1
XM_026911013.2 mRNA upstream 215720 1554942 ~ 1566787 (-) False LOC113524666
XM_034304412.1 mRNA upstream 215720 1554942 ~ 1565392 (-) True LOC113524666
XM_026911019.2 mRNA upstream 252733 1591955 ~ 1596479 (-) True htr2aa
trnal-caa_2 other downstream 5837 1314314 ~ 1314426 (-) True trnal-caa_2
trnan-guu_16 other downstream 24493 1295696 ~ 1295770 (-) True trnan-guu_16
trnat-agu_2 other downstream 26319 1293871 ~ 1293944 (-) True trnat-agu_2
trnan-guu_15 other downstream 28603 1291586 ~ 1291660 (-) True trnan-guu_15
trnat-agu_1 other downstream 30463 1289727 ~ 1289800 (-) True trnat-agu_1
trnaw-cca_4 other upstream 75446 1414668 ~ 1414739 (-) True trnaw-cca_4
trnat-agu_4 other upstream 108969 1448191 ~ 1448264 (-) True trnat-agu_4
trnak-uuu_2 other upstream 132267 1471489 ~ 1471561 (-) True trnak-uuu_2
TU89874 other upstream 189848 1529070 ~ 1529513 (-) True G75770
trnal-caa_7 other upstream 229523 1568745 ~ 1568857 (-) True trnal-caa_7

Expression Profile