RNA id: XM_034304260.1


Basic Information

Item Value
RNA id XM_034304260.1
length 3892
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC113524366
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 164750 ~ 174359 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGCCAAGACTCGCGACCCGACACTCATGACTCATGACCAAACACGTTCTAACAGATGAGAATGAAAGTAAACTCAGCAGCACGTTTTGTGAAGACAGGAACTTAACGCACTTCAACTACAAAACCACTTCCAATGGTAGGTAAAAGATCAGACTCAGCTGaatccagctgtgtgtccatggaGAGTGATCAGTCAATGGACCCTCCATTAAAATTCAAAGACCATTCTATTGAAATTAGCACTACAGAAGTTAAGAATTTAGACTCATCTGAACCCAGCTGGGTGTCCATGAACAGCGATGAGTCATTGGGAGTTCCACCGAACTTCAGCGCTGGAGACTGTGCTACTGATCTGAGACCCCAAAGGAGAAAGGAGCAGTCAAGATTTACCTGCAGAGAACAGTTGGACTcaatattcaagGAACTGGAACACAAAGCCATcgcttttttaaagaatgagctgaagaggttcAGGAAAAtactgagtccagattacccagaaTGCTCTGAGAGAGGGttagaggatgaggaggatcagagCCCTGTCAGAGAGTGTGCACTGAAGATCACATTGCATGTACTGAAGAACATGAAGCAGGCAGATCTCGCCAACACACTGCAGAGCAATCTGATCTATGTATATCAGCAAAATATAAAATCCAGACTCGTACAGAAATTTAAAGGCATTAATGAAGGACTCTCACTGCATGGATCCTCAAtgcttctgaatgagatctacacagagctctacatcacagagggttggagtggagccGTCAACagtgaacatgaggtgagacagattgagacagtgtccaggagaccagcaacacaggagacacccatcaaatgtaatgacctctttaaagacaggtccatcagaactgtgctgactaaaggagttgctggaattggaaaaacagtctctgtgcagaagttcattctggactgggctgaaggaaaagcaaatcaggataTAACCTTTGTATTTCCACTTCCACTAAGGGAGCTAAATTTAATGAAGCAGGAAAAGTTCAGTCTGATGAAACTTCTTTaccactttttcccagaaatgaaaaaattagAATTTATAGACTGCGAGGCCCATAAACTCCTGttcatctttgatggtctggatgagtgtcgacttcctctaaatttccagaacaataaGAGATTgagtgatgtgacagagtcagcctcagtggatgtgctgctgacaaacctcatcaaggggaatctgcttccctctgctctcgtctggataacctctcgaccaggagcaaccaatcagatccctacagagtgtgtagaccaggtaacagaggtacgggggttcagtgatcctcagaaagaagagtacttcaggaagaggatcagcgATCAGAGCCTGGCGAATAAAATCATCTCACACAttaagtcttcaagaagcctctacatcatgtgccacatcccagtcttctgctggatctcagccactgttctagagagaatgttgggtgaagcagagagtggagagatccccaagactctgactcaaatgttcacacacttcctgatctttcagatcaaatgcaaggaccaaaagtaccatcagaaatgtgaccctgatcctcagcagaccagagagagtatcctggcactgggaaaactggctttccaacagctggagaaaggaaacctgatcttctatgaggaagacctgagagagtgtggcattgatgtcagagaagcgacagtgtactcaggagtgtgtacccaaatcttcagagaggagtttgggcttcacctggggaaggtgttcagctttgtacatctgagtgttcaggagtttctggctgctttatatgcatttctcaCCTTCATTGACATAAATCTATCAAATCAACTAACCACTGATCTGTATGATCTTTTCaacacaccaaacatgtctgatttcctcaggagtgcagtggacaaggccttacagagtgagaatggacacctggacctgttcctccgcttccttctgggtctctcactggagtccaatcagactctcttacaaggtttaatgccacagacaggaagcagctctcactgcaaacaggaaacagtcgagtacatcaaggagaagatcagggagaatccatctccagagaaatccatcaatctgttccactgtctgaatgaactgaatgatcattctctagtgcaggaagtacaacAATACCTGAAAAGAGGAGATGACCATTGCCTCTATGGGGCCAGACTCTCTCCTgatcagtggtcagctctggtctttgtgttgctgaactcacaacaggagctggatgagtttgatttgagtaaatatgatccatcagaggaatgtcttaCAAGactgctgccagtggtcaaagtctccagaaaaGCAGTACTGTATCGTTGTAATCTgtcagaggaaagctgtagagttctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagtaacaataaactgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagacactggaGCTGTGTGGTTGTAATCTCACGGAGAAAATCTGtacagctctgtcctcagttctcagcttaaactcctccagtctgagagaactggatctgagtCACAAtgacctgcaggattcaggagtgaagctgctctctgctggactggagaacccacactgtacactggagatactgagACTGCGCATGTGTAACCTCACGGAGAAAACCTGTgcagttctgtcctcagttctcgaATCCCACTCCACCACTCTGAGAGAGCTGGAcctgagtgaaaataaaattcaggattcaggagtgaagctgctctctgctggactgcagaatccacactgcacactgcagaCCCTGAGGCTTTACAGCTGTAACCTCACGGAGGAAAGCTGTgcagctctgtcctcagttcttaGCTCAAACAcgtccagtctgagagaactgaatctaaGTTATAATGAACTCCACGATTCAGGGGTGAAGCTGCTGTCTgttggactggagaatccacactgtaaactagaGACACTGGAgcTGTCttactgcagtattacagatgaaggctgtgctgctctggcttcagctctgataTCAAACCCCACATCACAACTGAGAGAGCTGACTCTAAATGATAATAAACCAGGAGAAGCAGGAGCGAAGCTGCTCCTGGATCTCCTGAATGACCCGTGCTGTAAATTGGAGAAGATAGACATCCGATCATAACACCTCTGATCTAGTTGGAGGCTCACAGAGGATTATGAGGACAGGATTTCCTACAATACAAAAGCATCTATGCATAGAAAGTGATTTCACATGCTACTACATTTGACTGGATCCTTATTGGACCCTGTGCTCTCTTCATAGAATCACATCCTGTTTACTGCTGACTGGTGCTCAGCACTCCTCCGCACCCTGACCATCACCCCCGTATGTTTGCAGGAACAATGAAAAAGGTTTAGCAGAACCACACTGAAGTCTCGAGTCAAAGTCACAATAAGCTTAGAGCAATTTTTACATGGCTATGATGGGAAAAACGTCAGACCGACAACAGATACATggcaataataaacagaatgaacgaatgaatgaatgaagaacaaacaaacaaataaaataaataaatgcaagctATATTTACATTGAAACTACTGTTCTAAAAGTGGGGATGCAGAGTGGAGATAGTTGCAAAActgaatatttcacacacacacacacacactgaggcctATTCACATATGGATCTCTCCCTGGTTTGGTCTAACAAGACAAACTTTGCAGCACCATCAAAAAAGTGTGTATATTAAAGTATTTGTATTAAATTCATAAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578168.1 lncRNA downstream 78829 83870 ~ 85921 (-) False LOC117597330
TU88992 lncRNA downstream 78864 84571 ~ 85886 (-) True LOC117597330
TU88997 lncRNA downstream 101462 62798 ~ 63288 (-) True G75037
TU88745 lncRNA downstream 118881 44484 ~ 45869 (-) True G74827
TU88739 lncRNA downstream 129307 35050 ~ 35443 (-) True G74822
TU88996 lncRNA upstream 155584 329943 ~ 330490 (-) False LOC113524562
TU89138 lncRNA upstream 198251 372610 ~ 374644 (-) False LOC113524348
TU89152 lncRNA upstream 242378 416737 ~ 417747 (-) True G75183
TU89173 lncRNA upstream 257160 431519 ~ 434836 (-) True G75195
TU89179 lncRNA upstream 306709 481068 ~ 481964 (-) True G75201
XM_034304300.1 mRNA downstream 8471 136834 ~ 156279 (-) True LOC113524367
XM_034304295.1 mRNA downstream 23457 138938 ~ 141293 (-) True LOC117597326
XM_034304648.1 mRNA downstream 34987 50306 ~ 129763 (-) True LOC113524322
XM_034304299.1 mRNA upstream 22278 196637 ~ 201012 (-) False nms
XM_034304279.1 mRNA upstream 58216 232575 ~ 257446 (-) True edar
XM_034304265.1 mRNA upstream 147887 322246 ~ 354602 (-) False LOC113524317
XM_034304266.1 mRNA upstream 149104 323463 ~ 330401 (-) True LOC113524562
XM_034304262.1 mRNA upstream 165230 339589 ~ 354605 (-) True LOC113524317
TU89040 other downstream 2173 162214 ~ 162577 (-) True G75076
TU88741 other downstream 120404 43731 ~ 44346 (-) True G74824
TU88709 other downstream 132711 18934 ~ 32039 (-) True G74815
TU88975 other upstream 20672 195031 ~ 200718 (-) False nms
TU88976 other upstream 20672 195031 ~ 200325 (-) True nms
XR_004578164.1 other upstream 684045 858404 ~ 864607 (-) False sox21b
TU89432 other upstream 687669 862028 ~ 864494 (-) False sox21b
XR_003402538.2 other upstream 763653 938012 ~ 938203 (-) True LOC113524372

Expression Profile