RNA id: XM_034304738.1


Basic Information

Item Value
RNA id XM_034304738.1
length 1638
RNA type mRNA
GC content 0.44
exon number 1
gene id trim63b
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1862153 ~ 1863790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTGTGCCCTGATTGGTTGGTGGAATTGAGTGTCACCAGCAACAAGAGGATGGTATAAAAGCTTTGGCCGCTGTGCTTCCGCAGGACTGACAGCTGATGGGACATGCTTGTGCTGGCTGTGTTGCCATAATTACGACAGACATTGCAGCCTGCATTAGACACCAGCAGTAGTTAAAATGGAAATCCAGAGGACTGGCTCCCTGATGGGGGCACCTGGCTCCATGGAGAGTCTGGAAAAACAACTTAGTTGTCCAATCTGTCTTGATCTGTTCACCAAGCCTGTAGTGATCCTTCCCTGTCAACATAACTTGTGCCGTGGATGTGCTAGTGACCTTTACGACTCTCGAAACCCTTACAGATTTTCAGGCGGGGTGTTCAGGTGTCCAACATGTCGTTTTGAGGTGGTTCTTGATCGTCATGGTGTACATGGACTTCAAAGGAATCTTCTAGTAGAGAACATTATTGACCTTTACAAACAGCAGCAAGAAGGTGGTGGAACCACAGCAGTGCCTGTAAAACCTAAAGTCTCCACTGAACCACTGTGTGAGGAGCACAAGGATGAAAAGATCAACATCTACTGTGTGACCCACCAGGTTCCCACTTGCTCGATGTGTAAAGTGTTTGGAGAGCACAAGGACTGTGAAGTTTCCCCCCTTGCTAGCGTTTACCAGGCCCAAAAGGGAGAGATGAGCAACGCCATCGATGCTCTGGTTGCAGGCAATGCAAGGCTGCAGGCCCTGTTAAACCAGATGGAGGAAGCTTGCAAAGCTGTTCAGGAAAATGCCCAACATGCTAAGCAAAGGCTAGGAGAGCGATTTGATGGTCTATATGTAGCTCTAGAGGAACGAAAGAATGCCCTCTTGGAGCGTATTAGCAAAGAGCAGGATGAGAAGGTAGCAGCCTTACGAAAGCTAGCTAGACGTTATGGAGACCGCCTACAAGCAGGCACAGAACTCACTGATACAGCAGTTCAGGCCCTTGAACAAAGCAGTGCTGCAGAGTTCCTGCAGTCCTCCAAGGGTCTCATTGCACAGACAAAGGATGCAGCCAAGAGTTCCCTGGCTGAGGAAAGACCTGAACCTGGATTTGAAAGGATGGACCATTTTACTCTTTTCACAGACCATATTGAGACATTGTTGTCCAAGATAGACTTTGGAGCAGACGAGGATGAAGAATATGAAGAtgcagaggaagaagaagaggagtgAACTGGACACGTCCTGGTTGGAGAGTTAGTGTCCATGAAGGAGAAGTGAAGGACAATGTCAAAAATGTTGCTAAATAATATATGTTAACAGATTGTAAATAGTTTTACAGGGTATGCTGCTAAGCCATTTGAACACTACAGACTACTGAAAACTACAAAGCAACGTTGTGAGAGAAAACTGATTTAGTgccattttatacttttataatgatagtttatatatttgtctgtctgtgaaTCATGCTGATAGTATACTGAAATGAATGGAAAACATGATCATACTATTCATTTACGTGGatatgaaatgaaacagaacataatgtaaaataagaTTGTATAAGTGTATAAGATTGTATAAGTCAATTTTTGTGATTACTGTGGTTATTTTGCTGCATTACAATGAAAtctttaataaagcattaaatTGAGA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90017 lncRNA downstream 11929 1849237 ~ 1850224 (-) True G75880
TU90044 lncRNA downstream 42970 1807625 ~ 1819183 (-) False G75889
TU90039 lncRNA downstream 42970 1810898 ~ 1819183 (-) False G75889
TU90034 lncRNA downstream 48362 1810898 ~ 1813791 (-) False G75889
TU90045 lncRNA downstream 56222 1802671 ~ 1805931 (-) False G75889
TU90097 lncRNA upstream 47406 1911196 ~ 1917438 (-) True G75925
TU90099 lncRNA upstream 49341 1913131 ~ 1925253 (-) True G75926
TU90101 lncRNA upstream 50227 1914017 ~ 1914729 (-) True G75927
TU90126 lncRNA upstream 82183 1945973 ~ 1946176 (-) True G75947
TU90223 lncRNA upstream 250400 2114190 ~ 2114599 (-) True G76013
XM_034304840.1 mRNA downstream 115122 1723257 ~ 1747031 (-) True mlphb
XM_026911002.2 mRNA downstream 238104 1615900 ~ 1624049 (-) True med4
XM_026911019.2 mRNA downstream 265674 1591955 ~ 1596479 (-) True htr2aa
XM_026911013.2 mRNA downstream 295366 1554942 ~ 1566787 (-) False LOC113524666
XM_026947295.2 mRNA upstream 86342 1950132 ~ 1986039 (-) True ranbp2
XM_026947297.2 mRNA upstream 86342 1950132 ~ 1985889 (-) False ranbp2
XM_026947296.2 mRNA upstream 86342 1950132 ~ 1985889 (-) False ranbp2
XM_026947298.2 mRNA upstream 124750 1988540 ~ 1998073 (-) True lims2
XM_034304747.1 mRNA upstream 183989 2047779 ~ 2064298 (-) False LOC113547075
TU90050 other downstream 58508 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 187580 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 187968 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 199544 1662520 ~ 1662609 (-) True trnar-ucu_6
trnat-agu_7 other downstream 212027 1650053 ~ 1650126 (-) True trnat-agu_7
TU90190 other upstream 185233 2049023 ~ 2049385 (-) False LOC113547075
XR_004578243.1 other upstream 939097 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 940758 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 1075531 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1949689 3813479 ~ 3816036 (-) False faima

Expression Profile