RNA id: XM_034304769.1


Basic Information

Item Value
RNA id XM_034304769.1
length 2218
RNA type mRNA
GC content 0.58
exon number 15
gene id ints6
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1271407 ~ 1282002 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAGGAGTAGGGATCCGGCGAGCAGAGGAGACAGATACATGCTAGTTTCCTTCGAGGAAGCTCCTGCCGGGATAAAGATCTGGctgtccttctctgtctctcttctcagGCCGGATGGAAAGAGAGCCACGCCATCTTCATGACGGAACTGAGGAACCTGCAGGCTGTCGGCTTAACGTCGTTTGGCCAATCTTTAAGGGCCGCTTTCGATTTGCTCAACCTGAACAGATTAGTGTCAGGGATAGACAACTATGGGCAGggAAGAAACCCGTTTTTCCTGGAGCCTGCCATCATAGTGGCGATTACGGACGGAAGCAAACTGACAGGCACTGCAGGAGTGCAGGACGAGCTGCATTTACCGTTGATGACCCCGTTACCGGGCAGCGAGCTGACGAAGGAGCCGTTCCGCTGGGACCAGCGCCTTTTTTCTCTGGTGCTTCGCATTTCAGGCCACGCCCCTTTGGAGCCCGAGCCAGTGGGCGGAGTCCCGGCCGACCCCTCCCCCGTGACGCCCATGTGTGAGGTGACAGGAGgccgcTCGTACAGTGTGTTTTCTCAGCGCATGCTGAACCAGTGCCTGGAGTCTCTGGTGCAGAAGATCCAGAGCGGAGTCGTGATAAACTTTGAGAAGACGGGCCCCGACCCTGCTGAAGATGGTCCTTCAGACGTTAAATCCGGTCCCCAGCCGTGGCACAGCTGCCATAAGCTCATTTACGTGCGGCCCAATCCCAAAACGGGGGTTCCTGTTGGCCACTGGCCCATTCCTGAGTCCTTCTGGCCCGACCAGAACTCCCCCACtctgCCACCACGAATGGCCCATCCACAGGTGCGATTTTCCTGCATGGAGGCGGAGCCCATGGTCGTAGATAAGGTCCCATTCGATAAGTACGAGCTGGAGCCGTCTCCTCTAACGCAGTACATTCTGGAGAGGAAGTCACCACACACCTGCTGGCAGGTTTACGTAAGTAACAGCGCTAAGTACGGCGAGCTCGGGCAGCCGTTCGGCTACCTGAAGGCGAGTACGGCGCTCAGCTGTGTCAACCTCTTCATCATGCCCTACAACTACCCTGTGGTGCTGCCCCTCCTGGACGACTTGATTCGAGTGCACAAATTCAAGCCCACTCCGAAATGGCGTCAGGCCTTCGAGAGCTACCTGAAGACCATGCCGCCATACTACATCACGCCCCTGAGGAAGGCACTGAGGATGATGGGAGCCCCGAACCTGCTGGCCGAAAGCATGGAGTACGGCCTGAGCTACAGCGTTGCGTCATACCTGAAGAAACTCAGCCAGCAGGCGAAGGTGGAGGCGGACCGCGTGTGCGCGCTGGTAGGGAAGAAGGCGGGGCCTGATATGGGGATCAAGCTCCGCCTCCGAGGCTCTGCTATCTCGTTAGCTCACAGAAAGGATTTTGCACAGCTGCTGCACGGCATCATGGGAGATGGGCCGCTCGACATCAACCCCAAAGAGTTCTCAGGGTTCCAGCTAGCTGTGCTCAACAaggcccTGAAGCCACAGGGTCTGCGGAACCCGTATGACGTACCCAGGATTCAGCTGCTGGACCAGCTGAGCCGCATGAGGAGAAACCTCCTGAACACCAGCATGTGTGTGCTGAAGGGCCAAGACCAAGATCAGCTCCACAGCGTGCCCATAGCACAGATGGGCAACTATCAGGACTTCCTGAAacttagccccgcccccttgaGAGAGGCGGACCCAGACCAACCGAAGCGGCTGCACACCTTCGGCAACCCCTTCAAACTGGACAAGAAGGCGATGATGGTGGATGAAGCAGACGAGTTTGTGACTGGGACTCAGGGAAAAGGCAAGCGACCCATCGATACCAGCCCGCCTACTGGCGCTCCGAAAAGGAGGAGGTGCATGTCGCCATTACTGCGCCTGGGACGTGCGTACACCCCGCCCAATAAGACGCCACCCAGAGCTCCGGACGCCAATCACGCGGGCCACAGTGAATTGGAGCGGCGCCAGTGCTCAACCACACGGGCCATCTCGATTTGGAACGGGTCCCTGATTCCAACCACGTAGGCCACGTCGAATTGGAACGTGCCCCAGACTCCAATCACGTGGGCTGCCTCGAGTCCCCTGAACGGTCCCAGGAAGTGCCACCCTTGCCCCCTAACCTCGACGCAAATCAcctggaagaggaagaggacgCCGAGCAGCAGAACGGAGGACGCAATCCCGAGGAAGAGGAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89753 lncRNA downstream 17311 1237221 ~ 1254096 (-) True G75663
TU89722 lncRNA downstream 55703 1209385 ~ 1215704 (-) True G75636
TU89729 lncRNA downstream 101714 1169459 ~ 1169693 (-) True G75640
TU89714 lncRNA downstream 131204 1135626 ~ 1140203 (-) True G75628
TU89683 lncRNA downstream 190001 1081207 ~ 1081406 (-) True G75600
TU89783 lncRNA upstream 24569 1305989 ~ 1306353 (-) True G75687
TU89812 lncRNA upstream 84962 1366382 ~ 1367066 (-) True G75713
TU89818 lncRNA upstream 93966 1375386 ~ 1377189 (-) True G75719
TU89826 lncRNA upstream 103438 1384858 ~ 1385522 (-) True G75727
TU89831 lncRNA upstream 111359 1392779 ~ 1395138 (-) True G75732
XM_026911023.2 mRNA downstream 83908 1170709 ~ 1187499 (-) True lcp1
XM_034304297.1 mRNA downstream 112069 1155119 ~ 1159338 (-) False rpl31
XM_034304298.1 mRNA downstream 112210 1155119 ~ 1159197 (-) False rpl31
XM_026910536.2 mRNA downstream 158856 1103040 ~ 1112551 (-) True LOC113524329
XM_026910528.2 mRNA downstream 313669 944319 ~ 957738 (-) True LOC113524324
XM_034304700.1 mRNA upstream 25534 1306954 ~ 1315333 (-) True dhrs12
XM_026911029.2 mRNA upstream 25535 1306955 ~ 1315330 (-) False dhrs12
XM_034304180.1 mRNA upstream 38843 1320263 ~ 1339222 (-) True rubcnl
XM_026910995.2 mRNA upstream 115264 1396684 ~ 1404791 (-) True esd
XM_026911012.2 mRNA upstream 248405 1529825 ~ 1552435 (-) True si:dkey-230p4.1
trnal-caa_1 other downstream 13151 1258142 ~ 1258256 (-) True trnal-caa_1
trnaw-cca other downstream 18413 1252923 ~ 1252994 (-) True trnaw-cca
trnal-cag_10 other downstream 40738 1230587 ~ 1230669 (-) True trnal-cag_10
trnas-uga_4 other downstream 41017 1230309 ~ 1230390 (-) True trnas-uga_4
XR_003402581.2 other downstream 83908 1171881 ~ 1187499 (-) False lcp1
trnan-guu_14 other upstream 5633 1287053 ~ 1287127 (-) True trnan-guu_14
trnat-agu_1 other upstream 8307 1289727 ~ 1289800 (-) True trnat-agu_1
trnan-guu_15 other upstream 10166 1291586 ~ 1291660 (-) True trnan-guu_15
trnat-agu_2 other upstream 12451 1293871 ~ 1293944 (-) True trnat-agu_2
trnan-guu_16 other upstream 14276 1295696 ~ 1295770 (-) True trnan-guu_16

Expression Profile