RNA id: trnat-agu_1


Basic Information

Item Value
RNA id trnat-agu_1
length 74
RNA type tRNA
GC content 0.57
exon number 1
gene id trnat-agu_1
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1289727 ~ 1289800 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGCTGTGGCTTAGTTGGTTAAAGTGCCTGTCTAGTAAACAGGAGATCctgggttcgaatcccagcaGTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89753 lncRNA downstream 35631 1237221 ~ 1254096 (-) True G75663
TU89722 lncRNA downstream 74023 1209385 ~ 1215704 (-) True G75636
TU89729 lncRNA downstream 120034 1169459 ~ 1169693 (-) True G75640
TU89714 lncRNA downstream 149524 1135626 ~ 1140203 (-) True G75628
TU89683 lncRNA downstream 208321 1081207 ~ 1081406 (-) True G75600
TU89783 lncRNA upstream 16189 1305989 ~ 1306353 (-) True G75687
TU89812 lncRNA upstream 76582 1366382 ~ 1367066 (-) True G75713
TU89818 lncRNA upstream 85586 1375386 ~ 1377189 (-) True G75719
TU89826 lncRNA upstream 95058 1384858 ~ 1385522 (-) True G75727
TU89831 lncRNA upstream 102979 1392779 ~ 1395138 (-) True G75732
XM_034304768.1 mRNA downstream 7725 1271407 ~ 1282002 (-) True ints6
XM_034304769.1 mRNA downstream 8307 1271407 ~ 1281420 (-) False ints6
XM_026911023.2 mRNA downstream 102228 1170709 ~ 1187499 (-) True lcp1
XM_034304297.1 mRNA downstream 130389 1155119 ~ 1159338 (-) False rpl31
XM_034304298.1 mRNA downstream 130530 1155119 ~ 1159197 (-) False rpl31
XM_034304700.1 mRNA upstream 17154 1306954 ~ 1315333 (-) True dhrs12
XM_026911029.2 mRNA upstream 17155 1306955 ~ 1315330 (-) False dhrs12
XM_034304180.1 mRNA upstream 30463 1320263 ~ 1339222 (-) True rubcnl
XM_026910995.2 mRNA upstream 106884 1396684 ~ 1404791 (-) True esd
XM_026911012.2 mRNA upstream 240025 1529825 ~ 1552435 (-) True si:dkey-230p4.1
trnan-guu_14 other downstream 2600 1287053 ~ 1287127 (-) True trnan-guu_14
trnal-caa_1 other downstream 31471 1258142 ~ 1258256 (-) True trnal-caa_1
trnaw-cca other downstream 36733 1252923 ~ 1252994 (-) True trnaw-cca
trnal-cag_10 other downstream 59058 1230587 ~ 1230669 (-) True trnal-cag_10
trnas-uga_4 other downstream 59337 1230309 ~ 1230390 (-) True trnas-uga_4
trnan-guu_15 other upstream 1786 1291586 ~ 1291660 (-) True trnan-guu_15
trnat-agu_2 other upstream 4071 1293871 ~ 1293944 (-) True trnat-agu_2
trnan-guu_16 other upstream 5896 1295696 ~ 1295770 (-) True trnan-guu_16
trnal-caa_2 other upstream 24514 1314314 ~ 1314426 (-) True trnal-caa_2
trnaw-cca_4 other upstream 124868 1414668 ~ 1414739 (-) True trnaw-cca_4

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) unassigned_transcript_94 True 74 tRNA 0.58 1 NC_053113.1 27346198 ~ 27346271 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_94 True 73 tRNA 0.48 1 NC_056699.1 13288210 ~ 13288282 (-)