RNA id: TU122712


Basic Information

Item Value
RNA id TU122712
length 4986
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G103702
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23270144 ~ 23275282 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gattaaacccatttaattcaaGCAACCAGTCAAATAAGCAATATAGgctatttataataatcttataataactAGGATCTCAATAACATAACTGGTAAcagtacaagaaaaaaaaaaaacaaacaaacaaaaaaaaccccataaactccactttgagaaccactgatttaAAGGAACACAAGGGCAGTACACACTTTGTGAACTTATACAGAGTTCAATTCTAATTCGAAACCTACAGGGCTGACCGAATACACTAGATTACACAAATCTCAAAAAAGAGTGTTGAACACTGCATCAGTGTAAATCTCATAAGAGTGGTGAACACTGAACATTGCATTAGCAGGTCAGGAGCTTCGCCACGTGGTGTAGCACTTGTgtgaatttaaagaaaaaaaacctgctcaTGGTTAAATACAACAAACTCACCTGACTGCATATATAGCAATGAGCTGATCAgatgattttacacacacaatcttaTACAAATGAATAGAAGTAAAAAGTACCATTAAATTCAAAGTAAccatcaaaaacattttctagaATACACCATTTTGCCACACCTTAAAATGAGAATTAGGTCATTTCATATCATGTAAATTAATgaagacaaagaaacaaaggccataaatgtatttatccttttatttttgtacagaaAACCTCATCATCCAATGGTGAACACctagaagagagaaaaaagaaaaaaatgttaacacagGTTCTGTCAACTTTAGTGTTTTATCCAGTATTGGACATTATTACTGCATAGCCCTTCTCAGACAAATGCCTCAATGTCTTCAAGTGAAAGGGACCCTCTGCTCAAAGGGTCCGAGCTCAGAGGCACAGAACGTGACTCTGGGCACAGACACCTTCGAGCGAAGCACAATCCCATTCCGACTCGTCATCGTATCATCACTGAAGGGGGTGAGAGCTTATATGAAGCTGCTTGAGCTCCATTaataaactgcacacacaatCCATTCACATGCTGCACAGACCACAGATGCATATTCACACAGATCTCTACCCCAAACACCGGAGGGTCCTGACTTGATGGTGGCCAATTAAAATCTTCCATACTACCAAATGCACGTTATAGAAATACATCttaatatattttcagtgcACTTGATATTTTCACTGCATGTTAGTTTTAACACTGACTAATGGAGTCGGTttacaaatgtaataaaagtacAGAACTATCTGCAACAATGGTCTATAGCTAGAGGCCCTTTTTGTCAGGTTTACACACAGCACTCGAATTAGCAAACAAGTTATTAGTTAGGTACTGAATAAACTAAAAGCAAGTCAGACTGTTTCCTGCTATTTCAACTGCAGCATTAATGTTCACCTTTGCAAACCAAGAGTTGCTTTATGTTTTTGAACATCATGACTAAATTCTGGACCCACTCTGTCCCCCTTACCCTTTATGCTGTGGGTACAGGAGCTCCCTGGGGCATGACTGGGACTTCAGGCTTGGCCCCCTTCTGTTCAGACACAGGGGTGGTGGGGAGGATCTCCTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGAGGCTTCTTGGGGCCGATCTTGCCGCTGGGGTCCCAGGGAAGCATGATCTTAACCTTGATACCGAGCACACCtggacacagggacacacacacatcttaagCAAAACcaaatcacacaccaacatttcTTCTGCATATGGATTTtcccaacaaaaacaaaacctgacCAGGGAGATGCCGTTTGAAAGCCAATTTTTTGTCTGATTGTGCTTCTGATTAAACACCAGTACATTTGTGCTGTTGTATCAATACTTATAAACTCCCTTCTCAGACAAATGCCTCGATGTCTTCAACCGAAAGGAACACAGCACTCTGAGGAACTGAAGTCAGGGACACAGAACGTGACCACTAACCCAGAATCCAGAGAGTCAGCCAGCGTCCCGTTCCGACTCGTCATCGTATCATCACCGAAGGGGAATatcaaaaaaattacatttcatgttaACTATCCATTTAATAACCGAGATATTTAGGCACATGTATATATCACCGCACACTACACATGGATGGATATACACTTGCACGTGCACATTAAAGAAATAACTGGAATAGaagattaatttattaatttctcaTACCTAAAATGCATACAATCAGCCAAGATAAGTTTCACatctttagttttgtactgttGGTACGTAAAGCTTGCAGCGACCAGTTTAGCACCATGTAAACTGCACGCCTAAATCTCACTCACACCTTCTTGTTTGACTATACAATTTCTAGAGTCATAAAAAAGGagaataaacaaacatctccttccTGAACTTGATATTTGTCAGCGTGACACCAAACTATATGATGATGGTTGCTACTACTGATTTAAGCCAAGTgcctttttgtctgttttcaaAGATAAGTGCCTCTCATACTGTTCGAAAGTAGAAGTCTATTTGTAATTGCTTAATTTAACAAGTGAGATTTAAGCATGCAGACTGCGCAATGCCACGCTGCTGGTTAAAACCTTCAATTATTTACTAGCCtagtagctccagtgcaaagcTAAAGCTGTCATGGCTGAGCAACTGCATTTGAGGCAAGAGGAAaatgtgtaaactttttttcccccaaaacttGTCCTTAATGCTTGACATCAATGTCACATTTGGCTATACAACTGCATTTCCTTAAACAGTGAATGAGAACATGTGAGACTCAATacaaatacttttgtttttttttaaccacctgTTATTAGGCATTTCCTCATCCCTCACTCACCTTGGCGGAGCAGGACGTGGCGGACAGCGGTGTCCACGTAATAGTTGACGGGGTCTCCGCTGTGGATCATCAGACCGTCCACGAACTTCATGGACTTGGCCCTCTGACCCCTGAGCTTGCCGGACACGACCACCTCGCAGCCCTTGGCGCCACTCTCCATGATGAAGCGGAGAACACCATAGCAGGCCCTGAGGAAGACAATGACAAACCAGTCAGCATTGCCGCTTCAGATCAAGTGTGTTTCAAGCCAATCAATCACAacaatgctgatttttttttttttttgtaaactctTCTCAGACAAATGCCTCGATGTCTTCAACCGAAAGGAACACAGCACTCTGAGGAACTGAAGTCAGGGACACAGAACGTGACCACTAACCCAGAATCCAGAGAGTCAGCCAGCGTCCCGTTCCGACTCGTCATCGTATCATCACCGAAGAATAAGTAGCAGGAAATATTTTCTGGAAATTCGAGTGTTATTCTTGTGTGGCAAAAGGAGCTTGAAAGACTGAAGGGAGTGTATGGCGGCTTAAGATGCAAAAACGAGCCCGCCATACACTCGACCACCACATAACTAggaatactaataataaaaaaactaatatccCAGATACAACCGATTATAATAATTTGTCCACCCCAAGTGTGTAATGGTGCTTTAAATATTAGCATATATAATGACTTACCTGCGGACAGCCAGACCTCCGAGCAGCTTGTAGCGCAGAGATTCAGCCTGAGCGATGGCACACAAACCCCTGGTGGCCACCTTCTCAGCATAgagctaaaacaaaaacagcagtttAGTATGTGCACCCGAGGAACAGGAGACTTCTTTAGAATGGTGACAGCCTGGAAACCCGGTCTTACCTCCACGCTGCCCTCTGGGAACCCAAACCTCTTCTGAACAACAGCCGTCAGTTCCCTAATGCGACGGCCTTTCTCTCCCAGGACATTCTGGGTCTGGTGGCAAGAATGATGATCTCTGTCCTTGTTGGAGTGACCCGGACCTCCACACCGGAGTACCCATCCTCGGCAAGCTCTCGGGTCAGGAACTCATTCAGCTCGGCTTTGAAGATACCGTCTGAGACAAACTAAGGATGAAATCACAAACGTTAGGAAGCATGTCAATTAAATCTAAGAGATGATGATCTAATGTTAGACAGGCTACCTAGACATGTGAAATTACCCCATGTACCAATCTGATGCAAGTCTAAAGTGACAGATTTTTATTAGATATGCATGTACATGTGCTAATAAATGTGCTcagatttgacattttaaatCAGAGCCTTTTGTGAAGTTCattaaaacagctctgacattGGGATCATAAAGAAACAGGAAAGTGAGGACTGATTAATAGCtagaaaacacatttatctaGACAGCAGGCTATGAAGGGAAATGTCCTGACTGAGACAGGACATGCAACTAGTCACAAATTCACCACCCTCAGTTATTAAACCTTAAAACGGAGATTGTGAACaggcttaatttaaaaaaaaaaaaagtttaaaaaacaaacaaacaaaaaggctTCCTGCTGACTATACAAGTGCATTAGAGAGATAAGAATAACAGCTACCCAGTATGTAGTGTGCTGTATTACCATGAAATCATACGGGATTTATGCATAAAACTGACTGACTTAAGAGTTAAATAAGTATTCATATGAACAGCTTCTACACAATGActtagtttttaaataatgttaaaagaGGAGGGAAAATAAACAGCGATTGCTGTTCATAAGTACAAAGCAGGGATATGGTCCTAAATTAGCTctttagctagctggctaaaaaCCCCAGAGCTAAAGAAAATTAAGAGCCAAAACATAAGAGttaaaaagtaaagaataaagtCACACATGAAGAAACTATGCGCCAGTTTCTGACTGAGTTCAGTGACCGGTTAGAGACATCAGCTCCTGCCATGTTTCGCATCAGAGCCGCAATGAGTCGCATCCAAGGCAATCcggcaataaaataaacataaaacaacTATCTTCACGCAAACAATTATAATTAAACACCACTTCAATCATCTAAAACCATTATTACTACGTATAAACCCTAACTTTGACGGATAATCTTATAAAAATCTCGCTAACCTTTCTCTTCTTAGAAATTTGCACCGCCATCTTGCCGAAGGCCGCAGACAGGAAAGGAATGTTGACCAAAGCGGAAATCAATTTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122600 lncRNA downstream 7061 23262807 ~ 23263083 (-) True G103600
TU122573 lncRNA downstream 10956 23219022 ~ 23259188 (-) True G103576
TU122418 lncRNA downstream 334098 22928169 ~ 22936046 (-) True G103436
TU122387 lncRNA downstream 386991 22865924 ~ 22883153 (-) True G103410
TU122186 lncRNA downstream 933441 22335946 ~ 22336703 (-) True G103235
TU122733 lncRNA upstream 46381 23321663 ~ 23323412 (-) True G103719
TU122741 lncRNA upstream 54394 23329676 ~ 23330101 (-) True G103727
TU122845 lncRNA upstream 236875 23512157 ~ 23513328 (-) True G103817
TU122848 lncRNA upstream 297307 23572589 ~ 23575679 (-) True G103820
TU123026 lncRNA upstream 373402 23648684 ~ 23699689 (-) False rnpepl1
XM_026914213.2 mRNA downstream 107835 23158732 ~ 23162309 (-) True LOC113526825
XM_026914311.2 mRNA downstream 116495 23150108 ~ 23153649 (-) True LOC113526884
XM_026913500.2 mRNA downstream 928703 22336760 ~ 22341441 (-) True slitrk3a
XM_034305154.1 mRNA downstream 963375 22231448 ~ 22306769 (-) True si
XM_026913317.2 mRNA downstream 1605817 21641638 ~ 21664327 (-) True serpini1
XM_026914031.2 mRNA upstream 22073 23297355 ~ 23299010 (-) True aamdc
XM_026914029.2 mRNA upstream 22082 23297364 ~ 23298984 (-) False aamdc
XM_026913338.2 mRNA upstream 58895 23334177 ~ 23340381 (-) True aqp11
XM_034305528.1 mRNA upstream 180411 23455693 ~ 23504297 (-) False myo7aa
XM_034305527.1 mRNA upstream 180411 23455693 ~ 23498506 (-) False myo7aa
XR_004578321.1 other downstream 963375 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 2257044 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 2303234 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 3289885 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 3919201 19350762 ~ 19350943 (-) True LOC113527011
XR_004578330.1 other upstream 315663 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 1348234 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 1477330 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 2110043 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 2110043 25385325 ~ 25548928 (-) True si:cabz01090165.1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU16151 True 3572 lncRNA 0.30 2 CM030122.1 17241944 ~ 17246330 (-)