RNA id: TU122848


Basic Information

Item Value
RNA id TU122848
length 989
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G103820
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23572589 ~ 23575679 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTggaaagcaaaaacaaaaacaaaaaaaaccatcattTTACAAATTGCTGCGGTCCAATACATAAACCTGACTTTAAAGACCTTCATTTATTTCAGCCAACaaaacaggtaaaaaaaaaaaaaaaaagcaaaaaacactgGCAGGAATGCATGAAAGGTGCATagctccacataatctacaTCACTGTATTGCAGTTCTGGACAACTCTCTTAACTCTACTTAAGTTACTGTGACCTAAATTGAGACCTGATATTTTGGCAGCCTTCTGAGTTAAAACATTTCGTGGTGTACAGAAACAGTccttcagggaaaaaaagaacagctgtATGAAGAATCACTGTAGTAAACGTCAGCGGCAGAAAGGTTTGCAATAATAATGGTGTTCCAGCAGCAGTCTTCATCAGACTGGAATGTTTGGTAAGATATGGCTTAGGTTTTTCCTCCTACATTTTCCATATCTCCACCATTCATGTAAGGCACATGAGCTCATAGTATTGCAGTGACAGCTATGGATAGTTTAAATAAGACATGAAGAGCTGAGAGGTGATCCTCATCCTTGCCAGCAGagtgagaaaagagaagagaggaatgTTGagcaatgatgatgatgatgatgatgatggtggtgatgatggtccGGTTGTCTTCTTACATCCCCATTCGGATGCTCTGAATAATCTGGAAAATGGCTGATCCACACACTACAAAGACGAATAAGGCCAGGAGCCAGGGTCCTACCGCCGCCTTTTCGTCTTGTGTGCCTCTTGATGATTTGGCCACGTTCCCTCgctgtgtgatgtttttgcTGTGCTTCTCGTTCGCCATGCGTATCCTCTGCTTCGCGACCATGTTTTCAATATTAACCTACAGCGACTAAATATAAACTTGTggctaaatttaatttaaaaaataaaacctaaatatTCCAGTCTTGATGGAAAGCTCACCGGATCTTCGTTGTACTCCGAGAGATGTCTACGTACGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122845 lncRNA downstream 59261 23512157 ~ 23513328 (-) True G103817
TU122741 lncRNA downstream 242488 23329676 ~ 23330101 (-) True G103727
TU122733 lncRNA downstream 249177 23321663 ~ 23323412 (-) True G103719
TU122712 lncRNA downstream 297307 23270144 ~ 23275282 (-) True G103702
TU122600 lncRNA downstream 309506 23262807 ~ 23263083 (-) True G103600
TU123026 lncRNA upstream 73005 23648684 ~ 23699689 (-) False rnpepl1
TU123014 lncRNA upstream 157191 23732870 ~ 23738739 (-) True rpl35a
TU123018 lncRNA upstream 157191 23732870 ~ 23738739 (-) False rpl35a
TU123411 lncRNA upstream 839221 24414900 ~ 24464578 (-) True G104291
TU123423 lncRNA upstream 904682 24480361 ~ 24484072 (-) False sipa1l3
XM_026914466.2 mRNA downstream 1567 23559123 ~ 23571022 (-) True eif2a
XM_026913335.2 mRNA downstream 15055 23547434 ~ 23557534 (-) True dcun1d5
XM_034304937.1 mRNA downstream 17838 23547392 ~ 23554751 (-) False dcun1d5
XM_026913998.2 mRNA downstream 36909 23513393 ~ 23535680 (-) True capn5a
XM_034305528.1 mRNA downstream 68292 23455693 ~ 23504297 (-) False myo7aa
XM_026913977.2 mRNA upstream 2360 23578039 ~ 23582080 (-) False mtif2
XM_026913976.2 mRNA upstream 2360 23578039 ~ 23582076 (-) True mtif2
XM_026914176.2 mRNA upstream 18830 23594509 ~ 23610448 (-) False mmp23bb
XM_026913881.2 mRNA upstream 39692 23615371 ~ 23632367 (-) True ap2m1b
XM_026913557.2 mRNA upstream 58398 23634077 ~ 23678458 (-) True LOC113526489
XR_004578321.1 other downstream 1265820 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 2559489 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 2605679 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 3592330 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 4221646 19350762 ~ 19350943 (-) True LOC113527011
XR_004578330.1 other upstream 15266 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 1047837 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 1176933 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 1809646 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 1809646 25385325 ~ 25548928 (-) True si:cabz01090165.1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU424653 False 986 lncRNA 0.41 3 NW_019172850.1 1827918 ~ 1832674 (+)