RNA id: TU123932


Basic Information

Item Value
RNA id TU123932
length 1773
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G104750
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25243472 ~ 25245244 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTGGGTGGAACTTTTTTCCACAATGTTAAGAACAATCAGTATTTATAAAGTATTATAAAGCAAGGATATCTTCATAAACTGTAAACAACCATGAATATAGGCaagaaaagaacaacaaaaagaatACGGGTGAGAACAAGGGTacaagggatttttttttctttttgcattgaAAGAATAGTAATTAATTGTTTTCAGTTTAACTAAAGCTGTACTTAAAAGAAACAATATATTAATTGTGTGGTTATCtgcaaaaaaggaaaacagcaaaaaaagacaaaaaacaccacatcatcatcaaaacagagaagagtgcttacacactgtacacacagcaGTCTTGCAAACATGTTGACATGGTCATTTCTGGGGAAGAACATCCTCTGATATCCCTTGCTGTAATTTAGACAGCACTGTTTAACTAGTCAAATTATTATAAAGTACAAAACTGTAATATGTGTGGGAATTTTAAAGGATGTCATTCTTATTtgaaaataacaatatattacAAGATGTTAATGACAGTAATCTATAGTACTCTAGCCTAATGGATGAAAATAAGCACAAATGCAAACATCATAGCCCATAAAATCTGCATTAAcagattttatacattttctgtattatactatattatacatTATCCCTATCTATATTATACATTATctatttctgtagtaacaagcAATTGACAGGTACTTGTAAAGTGGATGCTTaacataatctaaaactaatgaTAAAGAATCAAACAGaatgctgttatttaataagaaaaaaagtataattgttgatatggtgatgttttctgtaagtagatgtttatttaacctttatggaaggagtcgctagtgtcagcactttgtcatGGTCACtaagttttctgccacgggAAAGTGTTCAGGGAAGCAGACTTTGtaatttctgttttctctgtaacacaacAAGCTTATTAGCTTTAAAAGAGTTAAtaaaaagagacgctggtgagagaatgaccaTGTTTATATTTAGCTGCTTTAACaggagtgataacaggaactatcttgctataactataaactgataagtGGTGTCATCCTTTAATTagtaatcattaaaaaatgtaatcatcggtaaattgctgtggtataagaggaataaaacacttcgggacatgctgttatgggaaaaggctgcatcacaccacttcatcactgattattttctgtaacagtacactgtcgtgttttattccttagaaCTGTATGCAAAGTATATGCATTTGTGAGTTCAGTggaaacttttttaaatcatattttaatatgcACATTAAGTATGGTATTAATCAAAAGCCAACTATCCAGAGAAAAGTGTACAAACAGCAACAATACGCATGcattaatacataaatactgGCTGtacttaattaatattaaaacagtACAGTTGTGGTCTCTCACCAGCTGCATTTGTTATTTCATCCCTTAGTTAAATGTGCATGCTGATATTTTTCATACAAATATATAGTTGCTACATTGGTACTACTGTACAGGTTGTTAAAGCATGCGCATTGTGCCAAGGTAAGATTTCCTAAAGTCTAATGGTGATGACAAGatgacacatttttacacaatgtGCGCTACTCTCACACTCAACATCATTTCCCCAACATAACCTAAAATGTTCAAGGAAGATATTCCTATTATATAATCAGGTAGTATCTACTACATTTCCCCAGTATTCCACCCCTGAATAATCCCAAATATATAGGAAACATCAGGACcacattact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123929 lncRNA downstream 1702 25239110 ~ 25241770 (-) True G104747
XR_004578344.1 lncRNA downstream 28682 25192057 ~ 25214790 (-) True LOC117597583
TU123870 lncRNA downstream 92316 25113977 ~ 25151156 (-) False G104694
TU123871 lncRNA downstream 92316 25146360 ~ 25151156 (-) True G104694
TU123851 lncRNA downstream 163985 25043786 ~ 25079487 (-) False tmem91
TU124309 lncRNA upstream 588035 25833279 ~ 25836038 (-) True G105092
TU124447 lncRNA upstream 842236 26087480 ~ 26087695 (-) True G105219
TU124618 lncRNA upstream 1074788 26320032 ~ 26320770 (-) True G105379
TU124743 lncRNA upstream 1337050 26582294 ~ 26608329 (-) False LOC113526510
XR_004578318.1 lncRNA upstream 1352190 26597434 ~ 26608339 (-) False LOC113526510
XM_026913566.2 mRNA downstream 61365 25156153 ~ 25182107 (-) False rasgrp4
XM_026913565.2 mRNA downstream 61365 25156153 ~ 25182107 (-) False rasgrp4
XM_026913564.2 mRNA downstream 61365 25156153 ~ 25182107 (-) False rasgrp4
XM_026913563.2 mRNA downstream 61367 25155182 ~ 25182105 (-) True rasgrp4
XM_034305165.1 mRNA downstream 108903 25106429 ~ 25134569 (-) False ppp1r13l
XM_034305513.1 mRNA upstream 50214 25295458 ~ 25301413 (-) True LOC117597607
XM_034305278.1 mRNA upstream 59492 25304736 ~ 25319693 (-) False LOC113526534
XM_026913665.2 mRNA upstream 59492 25304736 ~ 25319693 (-) False LOC113526534
XM_026913666.2 mRNA upstream 59492 25304736 ~ 25319682 (-) False LOC113526534
XM_026913667.2 mRNA upstream 59492 25304736 ~ 25309948 (-) True LOC113526534
XR_003402792.2 other downstream 480691 24752612 ~ 24762781 (-) False clasrp
TU123617 other downstream 532104 24623516 ~ 24711368 (-) True G104473
XR_004578330.1 other downstream 1633024 23590945 ~ 23610448 (-) True mmp23bb
XR_004578321.1 other downstream 2936703 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 4230372 20995341 ~ 21013100 (-) False sertad3
XR_003402763.2 other upstream 140081 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 140081 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other upstream 140081 25385325 ~ 25485121 (-) False si:cabz01090165.1
TU124615 other upstream 994086 26239330 ~ 26241005 (-) True G105376
TU124747 other upstream 1323841 26569085 ~ 26608329 (-) False LOC113526510

Expression Profile