RNA id: TU124742


Basic Information

Item Value
RNA id TU124742
length 1892
lncRNA type inter_gene
GC content 0.38
exon number 5
gene id LOC113526510
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26569085 ~ 26608339 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGCACCACCTGccgtagaagaagaagaagaagaagccgtagaaagaagacgaagaagaagagtTTAAACGGTGTTGCTCACCTGTAGCGCCTGTTGAGACACTGACATCATGCTGCAGGCGAAGTCTGAGGCCTTAGAAGGTGTCTACGTACCTCACAGCACCTCAGtctcctgtcacacacactccagtgcaGCAGAACGTTCTGGTGCGGGACGAGGTCCTGATGTCTGCTATCTCAGCGTTCATATCCATGGACACGCCCGTCTTCCACTCAGGGCAATCTGAGCATGCCCAGTGCAGCACTGTACCTGCAGCCCCACCCACAGGCCTCCCGGCTGGTGGCACAGGTCCACTTCTTTTCTTCATAATCCTTCAGGAACATTAGCTCAGTGGTGCAGGTGTATCGCACGCTGCCCCCGATGTCTGGAGACGGAAATGCAGATGTCCACACACTCAACCTCCAACCTGTTCAGCACTGAGCATCCATCATGAAACTTGAGCGGTCTGTGCATCTCTGTtctctttattgttctgtgtaaatTCATGAACTGGCCACTGGAGGTGCTGTGTACAAATGGTGCTTGGACTCCACAGATCTGCACTTCTGGCTGTCTAtattaatttttgaaaattgtAGTTATTAGTTTTTTATGTTAGTTTTGTTATTAACTGGCTATTATCTTTTTGTTAACTAATTATGTTaatagcaattttttaaaattattattgtttatttttaggtATTATTTTAATTCTAGGTTCTGGTTTAGTTTCTTCTACTAGTTTTAGTTATTATTGTTTAtgacattaaattttttttattttaattttttttcactcatacAACTTGACTTGTGCATACTGTTGTGAATTTTGAATcatgagactgtgtgtgtcactaagttagcttatttaaaaatatcttatttTGTAGGTAATGCAAGAAATGGTCAGGGGCCATAAAACTacttttagaattattttacaTAGCTGGAGCAATTCATCATGGACAAAAACCTcaaaactttatatataaactttatttttttctgtaccaGGATTGAAGGGTAGTAATctgaatataaacatattttttttttaaattctcataTTCTGTTAGTTCttaagtttttatttaacacaaaataaacatttacacacttgtgCAGTTGTAACACAGCTCCCATTATACCAGTTTACACTGTCAGCAGGTGACTGTTAATTAAAGCATGTATTTATTACACTGCATAGCAGATAtacacaaaaaggaaaaaaaaaattaaggtaatAGTACATTtctgtacatacagtatcttTGTACAAATTTCCACTTTCTTTTATTGGTCATTAACATTAACGTTCTATATCGGCTTCCTCTCTTCTGTTGAGCTTAAACATCTCTGCCATGACTGAATCCTCCTGAACATTTACCATTTTACTCTAGTACCATTGGTGATTCCACAAGAAACATTTCACCATGTCAGCTCCTGAATATTCACATAAAAGCGTTTCACTTCCAGACCTGTAACTTGCCACCCGTCTGTATATTCAGTTGCATTCTGTACATCAGCAACAACGCATGTTGGATAATACACAAGACTCGCAATGTTGACATCAGACTAGACATGTTGAATTTCGTGTGTCGTTCCTCTCCTTGGCTTTGACTGAGCTGATGGACTTGCTGGAAGAATGTGACCTTGTCTTGATGTCAAAAATCACGATGAAACATGCAAAAATGACCACGCCAGCCGAGAAGACTAATCGTAAAACATTTCTCTCCCACTGTGGATCTGGAAGAACATCAAGTGATCTCAGTGGAATTTTATTCGGAATTACTTTAGTTATTCATTTGATTAAAGAAGTAAAAGCCATGCTTACCATATGTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124618 lncRNA downstream 278763 26320032 ~ 26320770 (-) True G105379
TU124447 lncRNA downstream 511838 26087480 ~ 26087695 (-) True G105219
TU124309 lncRNA downstream 763495 25833279 ~ 25836038 (-) True G105092
TU123932 lncRNA downstream 1354289 25243472 ~ 25245244 (-) True G104750
TU124869 lncRNA upstream 135374 26743703 ~ 26743960 (-) True G105608
TU124872 lncRNA upstream 137790 26746119 ~ 26746339 (-) True G105611
TU124897 lncRNA upstream 179611 26787940 ~ 26788856 (-) True G105634
TU124902 lncRNA upstream 211137 26819466 ~ 26819717 (-) True G105639
TU124929 lncRNA upstream 267266 26875595 ~ 26875834 (-) True G105666
XM_026913357.2 mRNA downstream 67398 26515521 ~ 26532135 (-) True ube2q1
XM_026913358.2 mRNA downstream 67399 26515521 ~ 26532134 (-) False ube2q1
XM_026913597.2 mRNA downstream 134588 26324381 ~ 26464945 (-) False zgc:158464
XM_034305136.1 mRNA upstream 58938 26667267 ~ 26691735 (-) True rec114
XM_026913543.2 mRNA upstream 72027 26680356 ~ 26691735 (-) False rec114
XM_034305137.1 mRNA upstream 72027 26680356 ~ 26691735 (-) False rec114
XM_026913542.2 mRNA upstream 72027 26680356 ~ 26691735 (-) False rec114
XM_026913390.2 mRNA upstream 218695 26827024 ~ 26847963 (-) True pkma
TU124615 other downstream 358528 26239330 ~ 26241005 (-) True G105376
XR_003402763.2 other downstream 1050605 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other downstream 1050605 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other downstream 1114412 25385325 ~ 25485121 (-) False si:cabz01090165.1
XR_003402792.2 other downstream 1836752 24752612 ~ 24762781 (-) False clasrp
TU125182 other upstream 543983 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU126682 other upstream 3093823 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 3735202 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 4121629 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 4208250 30816579 ~ 30819614 (-) True G107803

Expression Profile