RNA id: TU126679


Basic Information

Item Value
RNA id TU126679
length 485
lncRNA type sense_over
GC content 0.39
exon number 2
gene id hipk3b
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29620799 ~ 29714001 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttgtttcATTgctattattgttttgttttttttttcttttcaatctaTCCACTTAATTCAGGGTGTTTGTACTAATCTGCTGTTGCTACTGTATTATCCTGAAATCACCTCTGAGTATGACGGCTTGTAAAAGTCCTAATGCATATTTTTCCGGATTTTGAGTTTCTGCAAGTTAcagcatttttgcttttttgactCACCAGTGATGAAATAGGAGCTGTTACTCACTGTTTATCCGCGTGTCAGTTCTGTggcttttgtttgctttgttttgtttaagtTTCGTTCGATGCTACACTAGTTTTGCCATGTAGCAATTGCACTGTGCAATATTTGACCGTATGAGGATGGGGGAAGTGTAACTCTCGGATGTGACGTCTTTACAGTTTGCGATAGTGTATCCTCTCTAGTTCTCAGTGACTTGGATGTGACTGGGCTCCGTCACATTAAGCGGGTTTTCCAGGCGACTCTTTTTGGTGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402809.2 lncRNA downstream 379458 29273077 ~ 29280183 (-) True LOC113526826
TU126422 lncRNA downstream 456797 29202007 ~ 29202844 (-) True G106951
TU126243 lncRNA downstream 854211 28805033 ~ 28805430 (-) True G106772
TU126180 lncRNA downstream 880623 28764739 ~ 28779018 (-) True G106713
TU126166 lncRNA downstream 897904 28761518 ~ 28761737 (-) True G106705
TU126704 lncRNA upstream 2754 29680263 ~ 29707900 (-) True G107193
TU126702 lncRNA upstream 46605 29724114 ~ 29724377 (-) True G107191
TU126723 lncRNA upstream 87867 29765376 ~ 29844857 (-) True G107210
TU126731 lncRNA upstream 245233 29922742 ~ 29923193 (-) True G107217
TU127060 lncRNA upstream 632338 30309847 ~ 30311846 (-) True G107510
XM_026913638.2 mRNA downstream 1832 29599585 ~ 29657809 (-) True kiaa1549lb
XM_026914401.2 mRNA downstream 180209 29398604 ~ 29479432 (-) True spon1a
XM_026913423.2 mRNA downstream 290090 29345335 ~ 29369551 (-) True syt9a
XM_026913926.2 mRNA downstream 328690 29294888 ~ 29330951 (-) False ppfibp2a
XM_026913661.2 mRNA upstream 49581 29727090 ~ 29766745 (-) False lrch3
XM_034305169.1 mRNA upstream 50575 29728084 ~ 29766747 (-) False lrch3
XM_026913659.2 mRNA upstream 50576 29728085 ~ 29766747 (-) True lrch3
XM_026913660.2 mRNA upstream 50577 29728086 ~ 29766746 (-) False lrch3
XM_026913662.2 mRNA upstream 50577 29728086 ~ 29766746 (-) False lrch3
TU125182 other downstream 2502501 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 3051312 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 3418636 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 4110713 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 24643 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 666022 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 1052449 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 1139070 30816579 ~ 30819614 (-) True G107803

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2729874 True 2759 lncRNA 0.39 2 NW_023494040.1 26616 ~ 29407 (-)
eurasian perch (Perca fluviatilis) TU40902 False 1007 lncRNA 0.33 2 NC_053114.1 29217855 ~ 29237426 (-)
mexican tetra (Astyanax mexicanus) TU40902 True 692 lncRNA 0.41 1 NC_035899.1 64052561 ~ 64053252 (-)
mexican tetra (Astyanax mexicanus) TU211568 False 1044 lncRNA 0.35 2 NC_035914.1 3994280 ~ 4005991 (-)