RNA id: TU126682


Basic Information

Item Value
RNA id TU126682
length 698
RNA type TUCP
GC content 0.54
exon number 2
gene id hipk3b
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29620799 ~ 29714001 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCGGTGAGATCAGCGCAGAGGGAAGGAGCTCGGAGATGAAGCGGAGCTCGTTTCCCGGTTAGAGTCGCGGCTCCGCCGCCCCACCGAGCGCAGCGCAGCGCACCGCACCGCACCGCCATGCCCGGGACTGCGTGCGGTTTCTCTGAGCGCTGATGCGGGTTTGTGGAGTTTGACACGCGCGAGACGCTGGTGCTGTTGCTATGTTATGATCAGGCGCGAGCTCTCCGTCTCCAGTTGTGCAGGACAAGATGGCAGCAGTGCACACAGATGTACACGCTATGAGTTATAATACGAGTGTTTAAAATGTCCGGAGAAACATTGGAGCTAACCAACTGTTACTCTGCGTGAAGGTATGGCCTCACAAGTCTTGGTCTACCCACCACATGTTTATCAAACTCAGACAAGTGCCTTTTGCAGTGTGAAGAAACTCAAAGTCGAACCCAACAACTGTGTTTACCATGAGAGGGCCTTCCCACTGACTTTTTTGAATGGTAGAACTCTTGGCGTTGGACAGCCAACGAAATTTGCACCGACGTACAAGACACGGGACTTTGCAGGGGGCAGACACCGTGGGGACTTTCCAGTGCAGACTGTCGCTGTACAAGGTGTGCAACGACAACCAACCAGTGCGGCAGCACATCACCAAGAAAGAGGTGTCCCGTTACAGGGCAAAGAGCCGAAACATCTGGAAAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126679 lncRNA downstream 24643 29659641 ~ 29677509 (-) False hipk3b
TU126683 lncRNA downstream 40453 29620799 ~ 29661699 (-) False hipk3b
XR_003402809.2 lncRNA downstream 421969 29273077 ~ 29280183 (-) True LOC113526826
TU126422 lncRNA downstream 499308 29202007 ~ 29202844 (-) True G106951
TU126243 lncRNA downstream 896722 28805033 ~ 28805430 (-) True G106772
TU126702 lncRNA upstream 10122 29724114 ~ 29724377 (-) True G107191
TU126723 lncRNA upstream 51384 29765376 ~ 29844857 (-) True G107210
TU126731 lncRNA upstream 208750 29922742 ~ 29923193 (-) True G107217
TU127060 lncRNA upstream 595855 30309847 ~ 30311846 (-) True G107510
TU127084 lncRNA upstream 649635 30363627 ~ 30391458 (-) True G107532
XM_026913638.2 mRNA downstream 44343 29599585 ~ 29657809 (-) True kiaa1549lb
XM_026914401.2 mRNA downstream 222720 29398604 ~ 29479432 (-) True spon1a
XM_026913423.2 mRNA downstream 332601 29345335 ~ 29369551 (-) True syt9a
XM_026913922.2 mRNA downstream 371199 29294886 ~ 29330953 (-) False ppfibp2a
XM_026913921.2 mRNA downstream 371199 29294887 ~ 29330953 (-) True ppfibp2a
XM_026913661.2 mRNA upstream 13098 29727090 ~ 29766745 (-) False lrch3
XM_034305169.1 mRNA upstream 14092 29728084 ~ 29766747 (-) False lrch3
XM_026913659.2 mRNA upstream 14093 29728085 ~ 29766747 (-) True lrch3
XM_026913660.2 mRNA upstream 14094 29728086 ~ 29766746 (-) False lrch3
XM_026913662.2 mRNA upstream 14094 29728086 ~ 29766746 (-) False lrch3
TU125182 other downstream 2545012 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 3093823 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 3461147 26239330 ~ 26241005 (-) True G105376
XR_003402763.2 other downstream 4153224 25385325 ~ 25548928 (-) False si:cabz01090165.1
TU127077 other upstream 629539 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 1015966 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 1102587 30816579 ~ 30819614 (-) True G107803

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU40901 False 737 TUCP 0.52 2 NC_053114.1 29257978 ~ 29269164 (-)
mexican tetra (Astyanax mexicanus) TU211262 True 691 TUCP 0.58 2 NC_035914.1 2738361 ~ 2755112 (+)