RNA id: XM_034305475.1


Basic Information

Item Value
RNA id XM_034305475.1
length 3937
RNA type mRNA
GC content 0.55
exon number 16
gene id hipk3b
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29620799 ~ 29714001 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGCTGAGAGTCGGTGAGATCAGCGCAGAGGGAAGGAGCTCGGAGATGAAGCGGAGCTCGTTTCCCGGTTAGAGTCGCGGCTCCGCCGCCCCACCGAGCGCAGCGCAGCGCACCGCACCGCACCGCCATGCCCGGGACTGCGTGCGGTTTCTCTGAGCGCTGATGCGGGTTTGTGGAGTTTGACACGCGCGAGACGCTGGTGCTGTTGCTATGTTATGATCAGGCGCGAGCTCTCCGTCTCCAGTTGTGCAGGACAAGATGGCAGCAGTGCACACAGATGTACACGCTATGAGTTATAATACGAGTGTTTAAAATGTCCGGAGAAACATTGGAGCTAACCAACTGTTACTCTGCGTGAAGGTATGGCCTCACAAGTCTTGGTCTACCCACCACATGTTTATCAAACTCAGACAAGTGCCTTTTGCAGTGTGAAGAAACTCAAAGTCGAACCCAACAACTGTGTTTACCATGAGAGGGCCTTCCCACTGACTTTTTTGAATGGTAGAACTCTTGGCGTTGGACAGCCAACGAAATTTGCACCGACGTACAAGACACGGGACTTTGCAGGGGGCAGACACCGTGGGGACTTTCCAGTGCAGACTGTCGCTGTACAAGGTGTGCAACGACAACCAACCAGTGCGGCAGCACATCACCAAGAAAGAGGTGTCCCGTTACAGGGCAAAGAGCCGAAACATCTGGAAAAAGGCAGGAGCAGCGGTGGAGCTACAGGGGCATCTGGAGGGGTCAGGGGCGAGGACAACGGGAGTAGTGGGGGAGAAGGAGTTGCCGGTGGAGGGGCTGACGAAGACAAGGAAGAAGACAACTGTAGTTCTAACTTGCCGGATGGTTCCCAGCGATGTGGTTTGAAACGTAAGAGCGAGGAGCTGGAGAACCAGGGAAACGCCATGCAGATAGTGGAGGACCTGTCAATGTTGCCTGCAATGTTGCAAACGAATGTGGGGAACCCGCCAGTTGGGGTCCCGGCAGCCGTGGCAGCGGGGCCAGTAAAGCAAGGAGGTGGAACTGGCAACGGGGATGGCGACTACCAGCTGGTACAACATGAGGTGCTTTGTTCGATGAAGAACACCTATGAGGTGCTGGACTTCCTTGGCCGTGGTACCTTTGGTCAGGTGGTCAAATGCTGGAAACGGGGCACCGGTGAGGTGGTGGCGGTAAAGATCCTGAAAAATCACCCGTCCTACGCGCGGCAGGGCCAGATTGAGGTCGGCATCTTGGCCCGTCTGAGCGGAGAGAATGCGGACGAGCATAACCTGGTGCGGGCTTTCGAGTGCTTCCAGCACCGTAACCATACCTGCCTTGTGTTCGAGATGCTTGAGCAGAACCTATATGATTTCCTCAAGCAGAACAAGTTCAGCCCACTGCCTCTAAAGGTGATACGGCCCATTCTTCAGCAGGTTGCTACCGCCCTGAAGAAGTTGAAGGCCATGGGACTGATCCATGCCGATCTGAAGCCTGAGAACATTATGCTTGTGGATCCTGTCCGGCAGCCGTACCGGGTGAAAGTCATAGACTTTGGTTCCGCCAGCCATGTCTCCAAAGCCGTTTGTTCCACGTACCTCCAGTCGCGGTACTACAGggCTCCGGAGATCATCCTGGGCCTGCCGTTTTGTGAAGCCATAGACATGTGGTCACTGGGCTGTGTGATAGCGGAGCTGTTCCTGGGCTGGCCCTTGTACCCCGGGGCGCTGGAGTACGACCAGATCCGCTACATCTCGCAGACGCAGGGTTTACCCGGAGAGAACCTGCTGAACCTGGGGACGAAGACGTCTCGCTTCTTCTGCAGAGAGTCTGACTCACAGTACGCTGCGTGGAGACTGaagTCCACAGAGGAACACGAGGCAGAAACTGGGATGAAATCGAAGGAAGCCAGAAAGTATATTTTCAGCTGTTTGGATGATATTGTGCATGTGAATTTAGTGATGAATCTGGAAGGCTGTGACTTGTTGGCTGAGAAGGTGGATCGTGGAGAGTTCGTGCTCTTGCTAAAGAAGATGCTATGGATCGACGCGGAGAAGAGAATCGTCCCCGGTGAAGTCCTCAACCATCCCTTCGTCACCATGCAGCACCTGCTCGACTTTCCCCACAGCAATCATGTGAAGTCGTGTTTCCACATCATGGACGTGTGCCGGCCGCGACCCGGAACCTACGACGGCGTCAACCGCAACAAAGCATCGTTCACGAGACCGGCCACGACCTCGGCGCCCAACCTCACCGTGCCCTACAGCAAGATGGCCGCCGTGCACACGCAACCTTTGGCTCCGTCTGCTCCCTCCGTCATGCATCCTGCGATCTCGCTCCAAACAGGAAGTGCTCAGTTTGGGGACTCATTTCAGCAAGCGCTCATCATCTGCCCGCCGACCATCCAAGGTCTCCCTCCCAACCCCAACAAGCCGGCGGGTTACTCGGTGCGAATGGAGAGCACGGTTCCACTGGTGACGCAGGCCCCCGCCATCCAGCCTCTACAGATCAGACCAGGCGTCATCACACAGCAAGCCTGGTCCAATCGGGCGCAGCAGATCCTGGTACCGGCCTGGCAGCAGGTGACGCCGGTGGCGTCCGATTCTATGGCAGGACCACAGAGGCTGGCAGACTGGGGGAAAGTCCGGCCTCACGGGAACCACTACAGCTCCATCCTGCCCCACCCCCAACCTCTGTTAGCCAATCACATGACAGCCATGTCAGCGCACCAGCCAATCAGCATCGGTATCGCTCATGTGGTGTGGCCGCAGCCGGCGGCCAACAAGAGAAACAAGCCCTGTGCAAACAGggCTAACTTCTCacacaacagcaacacacacacctcggcGTGCCATTCCCCGAAGACCACCAACGGTCGCAAACGCACTGAGGAAGTGGAGGGTCAGTGTCCTGAAACGGAAGATTGTGTGGTGGAGGCGGAGTCACAGGCGGAGtcacaggaggaggaggaggaggagcctGCGTGCTGTAAGGTAGAGGTAGAGGTGGAGGCGGAGTCGAACGGGCTGGGCGTGTCGGAGAAGCAGAGGCAGGCCGTGACAGCCGACACACCGAGTCCAGCAGGCAGCGTGATCAGCATCAGCAGcgatgaagaggaggatgaagaggagccGGGAGCGCAGAGGCACTCAGTAGAgtgtaaAGGCAGTCCGGAGTGTGAGGCGTGTCGGAGTACGCTGAATATGGAGCGTGTGTGTTCTCTCAGCAGTCCCGACTCCAGCCTCAGTACCAGCTCATCTGCATCGGTGCAGTCCAGCACCTCACCCTGCAAGAGACCcaacagcatgtCTGAGGACGAGCGAGAGAGCGGCTGTGATACGGTAGACGGCTCGCCTGCCTCCGACTCCTCCGGTCGAGCGGACAGTCCGTTCCTGGAAAGCCGTTTCATCGCTGACGGGAATCAGAACGTAAAAGCCACGTGGCGCGCAGAGACGGAGATGAGCAAAGCACCTGTACGGACCATGGTGGTGCCTCCCATGAGGGTGCAGAATAACAACAACGAACCCACGGCCAGGACGGGTACAGAACGTTTACATCACTGTATATCAGACAGAAATGGAAAACAGCTACGTGTGCTGTGTCTGTTAAGCGTAGATATCGCTGTTTTCAAAATGTAGATCACGCTACAACTCTGAACAACAAactggagattttttttaatctgacttCAACTGTAATCAGAGTTCTGTAGCGCTGAACATGGCTTAAACATTTAACCGCTGATTAAAACCCTAACCCAGGATTAATTCTGATTGTCTAAAAATGTCAGCGCTAACGATGCTTCTCATGAGATTGATTGTTTATTAATCTTATATCTTGCcttgagtggaaaaaaaattaagaaatctTTTGTTTTCGGAACAGTTTATCTAATATACCTGACCATTTCACAAACCACAAACCAAATTAATCCCTAAATTTAAAGATTAAAGTAAT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08826 HIPK; homeodomain interacting protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126683 lncRNA downstream 7208 29620799 ~ 29661699 (-) False hipk3b
XR_003402809.2 lncRNA downstream 388724 29273077 ~ 29280183 (-) True LOC113526826
TU126422 lncRNA downstream 466063 29202007 ~ 29202844 (-) True G106951
TU126243 lncRNA downstream 863477 28805033 ~ 28805430 (-) True G106772
TU126180 lncRNA downstream 889889 28764739 ~ 28779018 (-) True G106713
TU126702 lncRNA upstream 10113 29724114 ~ 29724377 (-) True G107191
TU126723 lncRNA upstream 51375 29765376 ~ 29844857 (-) True G107210
TU126731 lncRNA upstream 208741 29922742 ~ 29923193 (-) True G107217
TU127060 lncRNA upstream 595846 30309847 ~ 30311846 (-) True G107510
TU127084 lncRNA upstream 649626 30363627 ~ 30391458 (-) True G107532
XM_026913638.2 mRNA downstream 11098 29599585 ~ 29657809 (-) True kiaa1549lb
XM_026914401.2 mRNA downstream 189475 29398604 ~ 29479432 (-) True spon1a
XM_026913423.2 mRNA downstream 299356 29345335 ~ 29369551 (-) True syt9a
XM_026913926.2 mRNA downstream 337956 29294888 ~ 29330951 (-) False ppfibp2a
XM_026913661.2 mRNA upstream 13089 29727090 ~ 29766745 (-) False lrch3
XM_034305169.1 mRNA upstream 14083 29728084 ~ 29766747 (-) False lrch3
XM_026913659.2 mRNA upstream 14084 29728085 ~ 29766747 (-) True lrch3
XM_026913660.2 mRNA upstream 14085 29728086 ~ 29766746 (-) False lrch3
XM_026913662.2 mRNA upstream 14085 29728086 ~ 29766746 (-) False lrch3
TU125182 other downstream 2511767 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 3060578 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 3427902 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 4119979 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU127077 other upstream 629530 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 1015957 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 1102578 30816579 ~ 30819614 (-) True G107803

Expression Profile