RNA id: TU126702


Basic Information

Item Value
RNA id TU126702
length 239
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G107191
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29724114 ~ 29724377 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatagatgtttttgtattattattattattattttttttattattattattattattcgttTTATTTTGACCTAGGGTTCTTCCCCAGCAGAAATGATGTTGACCCTTCTGCAGGGTTTTCACCTGCGTGTCTGTACAGTAAATTAATACATTCCATACGTTTACAAGTATGTACcgctgaccacacacacacacacacacacaaggatgcaCTACATACTTCAATCAGACAGCGTgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126704 lncRNA downstream 16214 29680263 ~ 29707900 (-) True G107193
TU126679 lncRNA downstream 46605 29659641 ~ 29677509 (-) False hipk3b
TU126683 lncRNA downstream 62415 29620799 ~ 29661699 (-) False hipk3b
XR_003402809.2 lncRNA downstream 443931 29273077 ~ 29280183 (-) True LOC113526826
TU126422 lncRNA downstream 521270 29202007 ~ 29202844 (-) True G106951
TU126723 lncRNA upstream 40999 29765376 ~ 29844857 (-) True G107210
TU126731 lncRNA upstream 198365 29922742 ~ 29923193 (-) True G107217
TU127060 lncRNA upstream 585470 30309847 ~ 30311846 (-) True G107510
TU127084 lncRNA upstream 639250 30363627 ~ 30391458 (-) True G107532
TU127085 lncRNA upstream 643961 30368338 ~ 30369188 (-) True G107533
XM_034305475.1 mRNA downstream 10113 29668907 ~ 29714001 (-) True hipk3b
XM_026913638.2 mRNA downstream 66305 29599585 ~ 29657809 (-) True kiaa1549lb
XM_026914401.2 mRNA downstream 244682 29398604 ~ 29479432 (-) True spon1a
XM_026913423.2 mRNA downstream 354563 29345335 ~ 29369551 (-) True syt9a
XM_026913927.2 mRNA downstream 393164 29294889 ~ 29330950 (-) False ppfibp2a
XM_026913661.2 mRNA upstream 2713 29727090 ~ 29766745 (-) False lrch3
XM_034305169.1 mRNA upstream 3707 29728084 ~ 29766747 (-) False lrch3
XM_026913659.2 mRNA upstream 3708 29728085 ~ 29766747 (-) True lrch3
XM_026913660.2 mRNA upstream 3709 29728086 ~ 29766746 (-) False lrch3
XM_026913662.2 mRNA upstream 3709 29728086 ~ 29766746 (-) False lrch3
TU126682 other downstream 10122 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 2566974 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 3115785 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 3483109 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 4175186 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU127077 other upstream 619154 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 1005581 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 1092202 30816579 ~ 30819614 (-) True G107803

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU269196 True 2025 lncRNA 0.34 1 CI01000054 12358300 ~ 12360324 (-)