RNA id: TU127060


Basic Information

Item Value
RNA id TU127060
length 359
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G107510
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30309847 ~ 30311846 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCATTTGCGCAATAAAAGATTGTTTCTTGGCTCGTGCGCTTTATTTATCTCACTTTTACCGAGCGCGTGCTCGAGTTCCCACGGCGCACTTTCTGTTCAGGTGTGTTCTGTACAGCCAACATCCTGCACAGtgaaatACTGACTGACggcatggtgtgatgaagcggagttactgctaccacctcggagtttcctataacagcacatcatcaagtgttttattcctcttacaccacagcgatttaccaacaattacaattttttatttatcaaagaacaatgtcataatttttatccgttcgtagttacattaaatgttgtgtaacatccaCAACTGttgtgtaaactcctctgtcc

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00051 Fructose and mannose metabolism
ko00500 Starch and sucrose metabolism
ko00710 Carbon fixation in photosynthetic organisms
ko00680 Methane metabolism
ko04922 Glucagon signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126731 lncRNA downstream 386654 29922742 ~ 29923193 (-) True G107217
TU126723 lncRNA downstream 464990 29765376 ~ 29844857 (-) True G107210
TU126702 lncRNA downstream 585470 29724114 ~ 29724377 (-) True G107191
TU126704 lncRNA downstream 601947 29680263 ~ 29707900 (-) True G107193
TU126679 lncRNA downstream 632338 29659641 ~ 29677509 (-) False hipk3b
TU127084 lncRNA upstream 51781 30363627 ~ 30391458 (-) True G107532
TU127085 lncRNA upstream 56492 30368338 ~ 30369188 (-) True G107533
TU127088 lncRNA upstream 57041 30368887 ~ 30406964 (-) True G107536
TU127127 lncRNA upstream 109406 30421252 ~ 30423338 (-) True G107574
TU127103 lncRNA upstream 131677 30443523 ~ 30469903 (-) True G107550
XM_026914460.2 mRNA downstream 53763 30137011 ~ 30256084 (-) False tspan4a
XM_026914459.2 mRNA downstream 87489 30137011 ~ 30222358 (-) True tspan4a
XM_026913330.2 mRNA downstream 245481 29971467 ~ 30064366 (-) True luzp2
XM_034305169.1 mRNA downstream 543100 29728084 ~ 29766747 (-) False lrch3
XM_026913659.2 mRNA downstream 543100 29728085 ~ 29766747 (-) True lrch3
XM_026914034.2 mRNA upstream 43675 30355521 ~ 30359530 (-) True tnni1c
XM_034304953.1 mRNA upstream 115334 30427180 ~ 30433055 (-) True miox
XM_026913453.2 mRNA upstream 125183 30437029 ~ 30444319 (-) True adm2b
XM_026913573.2 mRNA upstream 140861 30452707 ~ 30464074 (-) True LOC113526499
XM_034305125.1 mRNA upstream 158114 30469960 ~ 30489913 (-) False ppp6r2b
TU126682 other downstream 595855 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3152707 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 3701518 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 4068842 26239330 ~ 26241005 (-) True G105376
XR_003402764.2 other downstream 4824726 25385325 ~ 25485121 (-) False si:cabz01090165.1
TU127077 other upstream 31685 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 418112 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 504733 30816579 ~ 30819614 (-) True G107803

Expression Profile