RNA id: TU127077


Basic Information

Item Value
RNA id TU127077
length 1136
RNA type TUCP
GC content 0.45
exon number 2
gene id G107525
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30343531 ~ 30344876 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGATATTTCAGCTCGAGTTTCTCCATAAACACCTGCACCAAAGCCGtcacttctgattggctgatcagcAGATTTCCACTCACGTTACAGTTCAGGTCTATCCAATCAGTCCTCAGCGCCTGAAAGTCTGTCTGACCGACCTGAAACGTCTGATCCCATCTGATCTCAGGGTCATACTCAGCCTTGCTCACGACCCCGGCCTCCATCTCCGAGTCTCCGTATATGACCCACAGGTCTGTGCTGTCGTTAGTGAGTTCTTTATGCGTTTTGGCTCCGCCCCTATTCACAAAGTCTCCGCCTTTCCCCAATGCAGAGTTGCCGGTGTGTACAGGAGGAGGAGGGTTGGTGTATTTGCCCTGGTGGACGTTGCCATGACGATATTTCTGATGGATGGAATCATCTTCAGGAGGCTGAGGGTCCTCATGCTTTGACGCGGAAAGAAAGATATTCCTTGTGCCATTTTTCGGTCCGTTAATAACATGCGGTTTTGCTCCTGATCTCTGATCCTGGATTGGAGCTTTATCTTCTTGCTTCATATGATTCACTTGACCAATAGGTTCTTTATCTTCTTTCTGACCAGGAATTTCAGCCTTCCGTCCAAATTGTTGGTTCTTGTagtccattttgttttgttttcgcAGTTTATGTTGGTTCTCGTCAgcagttttgttttggttttgcacATTATGTTGGTTCTTGTCGGCCATTTTGGTTTGGTTTCGCAGCTTATTTTGGTTCTCttccactgttttgttttggttttgcagTTTATATTGGTTCTCGATGgccattttcttttgttttcgcAGTTTACGTTGGTTCTTGTTGgccattttgttttggttttgcagTTTATTTTGGTTCTgatcagccattttggtttggttttgcaGCTTATTTTGGTTCTCCTTCTCTGATACTGATCCATTACCTCGTGCCAGGTTCTCCTGCTGCACTGTCTCTATTCTGTTCATATTGTGTTGGTTTGTCCTCCTTCTTCTACTCACGTTCTTCTTGTTCAGTGAGTTAGAGAAGAGTTTCCTTTGTTGGCGCTGTATGTAGTCATCACGGTAGTCAAATTCATCCTCGTCTTCCATCTCCTCGTCCTGTCCTCTGAACTCCTTCCATCCCGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127060 lncRNA downstream 31685 30309847 ~ 30311846 (-) True G107510
TU126731 lncRNA downstream 420338 29922742 ~ 29923193 (-) True G107217
TU126723 lncRNA downstream 498674 29765376 ~ 29844857 (-) True G107210
TU126702 lncRNA downstream 619154 29724114 ~ 29724377 (-) True G107191
TU126704 lncRNA downstream 635631 29680263 ~ 29707900 (-) True G107193
TU127084 lncRNA upstream 18751 30363627 ~ 30391458 (-) True G107532
TU127085 lncRNA upstream 23462 30368338 ~ 30369188 (-) True G107533
TU127088 lncRNA upstream 24011 30368887 ~ 30406964 (-) True G107536
TU127127 lncRNA upstream 76376 30421252 ~ 30423338 (-) True G107574
TU127103 lncRNA upstream 98647 30443523 ~ 30469903 (-) True G107550
XM_026914460.2 mRNA downstream 87447 30137011 ~ 30256084 (-) False tspan4a
XM_026914459.2 mRNA downstream 121173 30137011 ~ 30222358 (-) True tspan4a
XM_026913330.2 mRNA downstream 279165 29971467 ~ 30064366 (-) True luzp2
XM_034305169.1 mRNA downstream 576784 29728084 ~ 29766747 (-) False lrch3
XM_026913659.2 mRNA downstream 576784 29728085 ~ 29766747 (-) True lrch3
XM_026914034.2 mRNA upstream 10645 30355521 ~ 30359530 (-) True tnni1c
XM_034304953.1 mRNA upstream 82304 30427180 ~ 30433055 (-) True miox
XM_026913453.2 mRNA upstream 92153 30437029 ~ 30444319 (-) True adm2b
XM_026913573.2 mRNA upstream 107831 30452707 ~ 30464074 (-) True LOC113526499
XM_034305125.1 mRNA upstream 125084 30469960 ~ 30489913 (-) False ppp6r2b
TU126682 other downstream 629539 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3186391 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 3735202 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 4102526 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 4794603 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU127397 other upstream 385082 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 471703 30816579 ~ 30819614 (-) True G107803

Expression Profile