Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU127468 |
| length | 587 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 2 |
| gene id | G107805 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 30828151 ~ 30829653 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0016064 | immunoglobulin mediated immune response | biological_process |
| GO:0002250 | adaptive immune response | biological_process |
| GO:0002252 | immune effector process | biological_process |
| GO:0002253 | activation of immune response | biological_process |
| GO:0072376 | protein activation cascade | biological_process |
| GO:0006956 | complement activation | biological_process |
| GO:0006958 | complement activation, classical pathway | biological_process |
| GO:0006959 | humoral immune response | biological_process |
| GO:0048584 | positive regulation of response to stimulus | biological_process |
| GO:0002682 | regulation of immune system process | biological_process |
| GO:0002684 | positive regulation of immune system process | biological_process |
| GO:0050776 | regulation of immune response | biological_process |
| GO:0050778 | positive regulation of immune response | biological_process |
| GO:0002443 | leukocyte mediated immunity | biological_process |
| GO:0002449 | lymphocyte mediated immunity | biological_process |
| GO:0002455 | humoral immune response mediated by circulating immunoglobulin | biological_process |
| GO:0002460 | adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | biological_process |
| GO:0019724 | B cell mediated immunity | biological_process |
| GO:0031012 | extracellular matrix | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU127460 | lncRNA | downstream | 2064 | 30811047 ~ 30826087 (-) | True | G107800 |
| TU127466 | lncRNA | downstream | 5794 | 30820709 ~ 30822357 (-) | True | G107804 |
| TU127464 | lncRNA | downstream | 7729 | 30819206 ~ 30820422 (-) | False | G107803 |
| XR_003402799.2 | lncRNA | downstream | 112698 | 30714118 ~ 30715453 (-) | True | LOC113526678 |
| TU127103 | lncRNA | downstream | 358248 | 30443523 ~ 30469903 (-) | True | G107550 |
| TU127470 | lncRNA | upstream | 5981 | 30835634 ~ 30884613 (-) | False | G107806 |
| TU127473 | lncRNA | upstream | 5981 | 30835634 ~ 30843492 (-) | False | G107806 |
| TU127474 | lncRNA | upstream | 5981 | 30835634 ~ 30843492 (-) | True | G107806 |
| TU127476 | lncRNA | upstream | 5981 | 30835634 ~ 30843492 (-) | False | G107806 |
| TU127471 | lncRNA | upstream | 6848 | 30836501 ~ 30843492 (-) | False | G107806 |
| XM_034305116.1 | mRNA | downstream | 23655 | 30792940 ~ 30804496 (-) | True | si:dkey-30c15.2 |
| XM_026913544.2 | mRNA | downstream | 67972 | 30756449 ~ 30760179 (-) | True | pdp2 |
| XM_034304940.1 | mRNA | downstream | 73061 | 30740467 ~ 30755090 (-) | False | si:dkey-30c15.10 |
| XM_034305072.1 | mRNA | upstream | 16384 | 30846037 ~ 30849697 (-) | False | selenot1b |
| XM_026911251.2 | mRNA | upstream | 20751 | 30850404 ~ 30857147 (-) | False | LOC113524884 |
| XM_026911250.2 | mRNA | upstream | 20751 | 30850404 ~ 30857147 (-) | True | LOC113524884 |
| XM_034305071.1 | mRNA | upstream | 20751 | 30850404 ~ 30854568 (-) | False | LOC113524884 |
| XM_034305070.1 | mRNA | upstream | 28276 | 30857929 ~ 30898090 (-) | True | ppp1r37 |
| TU127465 | other | downstream | 8537 | 30816579 ~ 30819614 (-) | True | G107803 |
| TU127397 | other | downstream | 96120 | 30729958 ~ 30732031 (-) | False | bbs10 |
| TU127077 | other | downstream | 483275 | 30343531 ~ 30344876 (-) | True | G107525 |
| TU126682 | other | downstream | 1114159 | 29702152 ~ 29713992 (-) | False | hipk3b |
| TU125182 | other | downstream | 3671011 | 27152312 ~ 27157140 (-) | False | si:dkey-151j17.4 |
