RNA id: XM_034305388.1


Basic Information

Item Value
RNA id XM_034305388.1
length 4303
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC113524890
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30919184 ~ 30989204 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagacagaggaaaggaGAGACGCAGCTACAAAACCAGGGTATTTTGCCGGCGAGTGAAAAGTTTATGCTCGTTGCTCGGGTTTCCTCTGCTGTCCGGATCAGGCTGGTCAGGAAGGCAGCAGAGCTCCAGCACACAGAGGAACACCGGTGGATATTTTTTATGCAAAGCTGACAacaggatgagtgtgtgagcacACAAGGTCAGCCGTCTGTCCAtccgcctgtctgtctgtccatccatcatccctccatcctcgGCCTCAGCATGAAGTCGAGCCCCGCGCTGCCCCACGACCTCCGACACACACCCTGAGCGAGACACAGAGCTGAGCCACAGCGCTGACGAGTCCACGAGAGGCGAAGGTGTGTAACGCTGGAGCTCAAGGACAAACCATGGACTCTGCAGACCAACCACCACACCTGGGCGTCCAAAATGTTCCTTGCTAGTCTTCTGGTTCTGATGACCCTGCTGCTACCTCCAGCCTTGTCAGGTCACCAGGGGGATTCCGCTCACTCTGATGGGAACCCAGGAATCTCTCTAGAGCCCAGTTTGGCCCAGACCATCCAGAACCTTCTCTTGACCCGACTGGGCCTACAGTCCTCTCCTAACCCTCGCCCAGGAGCAGTGGTACCTCAGTATCTCCTGGACCTCTATCGCTTCCACACACAGCAGTACCACCTAGTAGAAGATCCAGATTTCAGCTTTCCTGTGGAGCATGTACAAGGCGCTAACACGGTCCGCAGCTTCCACCATGCAGTGTCTTCAGACCTTCACAGCCCTGTTGAGAAGAGTGACAGCATCCATATAGCTTTTAACCTGTCCTCTATTCCTTCCTATGAGAATGTGGTCTCAGCAGAGCTGCGTTTTCTGCGTGGAGGAACACACAGGGGTTCAAAACCTCACACTGTCAGCCTGTATGCCTCTGGTGGCAACACTGAGCCCAAACTTCTCCATTCACGACAGCTAGTTAGAGAGCCCTCGGGGTCTTGGGAGGCCTTTCCTCTGAATGCAGAACTGTTTCAGCAGTTGTCCGATGCAGGGAAAGTGGCCTTTATCTTGGAAGTGACCTCAGATAATAGCAGTAACACTGTGGAGGACATGGACTCAGAGGGACACTTGAGAGTGCGCAGGTCTGCAGGTGAAGATGACTACAGCTGGGCACGGCAGAGACCACTCCTGGTCACTTACAGCCATGATGGGCGCAGTGAACCTCTCATTCCCTTCGGAAAGAAGAAAACCCCCAGGGGTAGGAGGGGAGGTAACAGGGCTAAAAACCTCAGAGGTCAGGGGTCACAGGTAAGCTGGCGTGATGTGTGGACAGACAGGCGGGTGAAGCGGAATAACGGTGGTCGAGCAGCTAAGCTGAAACGCCTGTCTCGCTCTCGATGCCGCCGCCATCCCCTCTACGTGGACTTCAAAGACGTCGGGTGGAACAAATGGATCGTAGCACCGACTGGTTATGACGCCTTCTTCTGTCTGGGTGAGTGCCGCTTTCCCCTCGCCGACCACATGAACTCGTCCAGCCACGCCATGGTGCAGACACTGCTGAACTCGGTTAATGGAGCTGTGCCTCGAGCCTGCTGTGTGCCCACGGCCCTCAGTCCCATCGCACTCCTTTATCTGGACCAGGAAGATCACGTGGTGCTGAAAAACTATCAGGATATGGTAGTGGAGGGCTGCGGCTGCCGGTAGCAAGGGATAGATAAAAAGGCAAAAAGCATGAAAACCTGGAAGAGCaagcagatgaaaaaaaaagaaatatcacaTTCTATAAATCCTTAAAGGAACCTTTAGGGACTTTCCCACAAACCTCTAGCGCCAAGCTTTAAATTCCTGTCTTGTAGTGGTGCATTGCTTTGTTCACAAAGCAGcgcaaatctgatttatttcttaaatcCAATTTTTAGATTCTCAGGGCTGAATATATTTATGTGCGCTCGCAATGCATCGAAGTTCATTTTAAAAGGCTGTAGCTAATCACTAATCAAATCGCTAATCAGTGTGCCTGGGACGATAATATGTAATCAGTCCCACTTCCAAAAATCCCGCCCTCGTTACACAATCCGCCCAAATTCCCAAAAATCCAGTTTTAATATACAAAcaccatttgttttttttttaataatcccACACTTGTGTTGTATCTTGACTTGCCTTCATGATCGCATTAGTCTATGTTTTTGTTCTCGATTCTAATTTCTAATCTCAACAAGCGATCCACACAAAATTCCTCCCAAAAATAAAAAcgaaattaatttaattcaattcacttttatttgtacagcacgATTTTAACAGTAgacctttacagaaatgtagatTTATACTGAGATAATCAGAAACCTTCAGCAGTCACATACACACCTTCAAAACACTTACAAACGGGTGTAACACATCGCCACTATCCCTATCTGTATCTGggtttaaacccaaagtgggtgtggcctaaagaGAAaggtattttttctttttttttttttgaactctAGCACTCCGCCCTAAAAAACACTGGAACAGTGGTGTGTGAATTGCGGCTCTGATGCTTCCTCAACCTAATCGCTCTTgactagagatgtgtgtgtggggctgctTTTATAATCCCACTCACAGCgttagcatttttgtttttttttgtagcctgCCATATCTTCTAACCAgggctgagtttcccaaaagcattgcaAAGTTAACATTATCTTCACTGGGTgagagagtgttcagtgtgatgctcgctctaccattTAGTGATGATCTTTGTGTCTCAGGGAAACTCAACCCAGTTTagttaatataaacaaactagtagtgtaatttaaaccactgtgacacTGActaggcagttactaaggatgaatcaGTGAAGGCTGTAAATACATCACACAGCACCGCACACTCATATTAACGCTCATATTAACGCTCATATTAACGCTCGTGTTAACGTTTGTGGTCTTTGTTCGTCCTGTGAGCTTCACATCTGACTGCTCACTCGTGaccacatgaaaacaaaaacctccAGCTCGCGTGAACTTTTGTTGAgatcccagtcctgatacaCTCCTCCAGTCTCACTCAGATGCCCTGTGAAGCTTTCTGACATCTGAcaaactttctaaaaaaaaaagtgcacctcctatttggATCTTTGAAGTCTATACTTGcgtctgtttagaacacattaccTTCTGAATGATGTAACATCAAACACgttaaaaatctgatttgagCTGCTTGTCTGAACAAAGAcgatgtctctgtgtgtgtgctgtcctGCTCACGGCTCGTCCAGCTTCCTGCTCTGTGCTGTAAAAATGACTGCAGCTCTATTCGTCTCAGTCTCTATTTGTCTGCCTTGTTgtgtacttcctgttcctgtttcgcaccttcttcttcctctcagtAGCGTCAGGTCACTTCAGTGGAAACATGGAGCTTCTCGATAAAGGACACTAGACGCTTTGATGGACTTCAACTTGAAAAGAAGCCACACGTCAAGTTCACTATTCACAGATAATCTTCCAGTGGATGTGCAATTACAGAAAAGACTGGAACACAAGCACTTCTCACCagaaaatattttagtaaaCCTGACACTAATTTTGAGTAACTATCCTATTGTTTGAATGTATtcgtgttattattattattattattattattattattattattattattattattatttatggtgTTATGTTAATTTACCTTGCAGTCAAAGAAAACGTCACAGTTGCTAAACAAATACTATCGTAAAGTAAATCTAATTTAAGAGAGcatatatatctgtatgtgtatctatttaaataataaatacatatttaatctTGACAAATATTCCAGATCCTCACAAATACACTGAAGGTCATGTGTTCATTTCTGTATGAAACCGAGTCGTCGAATCTTCGTAGTTTCCCGTAATGTCCAGCTATAAAACAATGACCGCTGTCTCAGCATGTCGAGTTTAGCTACAATATCACACAAGCGTACAAGTATCTGTTCCGCCAAACGCAGTCCTGAAATTGTGTTacagtgaaacagtgaaacagtgaaacagtTCTCATCAAATCGTACatctgtctttaaaaaaaaaaaaaaagtgaaatatttcaagtggaaaaaaagtCGAACTCCCCGCTGGTGCAGGATGTTCAGGTCATTAAAATGTCCGGATGATTTCCTGATTAACGCTTCACCACTGCGATGCCTCCGAGCTGCTTTTACACAACCGTCTGTGGAAATGATGTCTAATGTCTGAAGATGtgaaatgcagaaaataaaaataaacagaaaactgatcaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578353.1 lncRNA downstream 11164 30900565 ~ 30908021 (-) True LOC117597590
TU127470 lncRNA downstream 34572 30835634 ~ 30884613 (-) False G107806
TU127458 lncRNA downstream 69501 30845729 ~ 30849684 (-) True selenot1b
TU127473 lncRNA downstream 75693 30835634 ~ 30843492 (-) False G107806
TU127474 lncRNA downstream 75693 30835634 ~ 30843492 (-) True G107806
TU127503 lncRNA upstream 66073 30996273 ~ 30998215 (-) False LOC117597523
TU127506 lncRNA upstream 66073 30996273 ~ 30999390 (-) False LOC117597523
TU127507 lncRNA upstream 66073 30996273 ~ 30998215 (-) False LOC117597523
TU127508 lncRNA upstream 66073 30996273 ~ 30996588 (-) False LOC117597523
TU127509 lncRNA upstream 66073 30996273 ~ 30999390 (-) False LOC117597523
XM_034305070.1 mRNA downstream 21095 30857929 ~ 30898090 (-) True ppp1r37
XM_026911251.2 mRNA downstream 62038 30850404 ~ 30857147 (-) False LOC113524884
XM_026911250.2 mRNA downstream 62038 30850404 ~ 30857147 (-) True LOC113524884
XM_034305071.1 mRNA downstream 64617 30850404 ~ 30854568 (-) False LOC113524884
XM_034305072.1 mRNA downstream 69488 30846037 ~ 30849697 (-) False selenot1b
XM_034305068.1 mRNA upstream 31163 30961363 ~ 30967101 (-) False gemin7
XM_034305066.1 mRNA upstream 31163 30961363 ~ 30967020 (-) False gemin7
XM_034305069.1 mRNA upstream 31163 30961363 ~ 30966975 (-) True gemin7
XM_034305067.1 mRNA upstream 31166 30961366 ~ 30967129 (-) False gemin7
XM_034304998.1 mRNA upstream 57055 30987255 ~ 31068479 (-) True LOC113524886
TU127465 other downstream 99571 30816579 ~ 30819614 (-) True G107803
TU127397 other downstream 187154 30729958 ~ 30732031 (-) False bbs10
TU127077 other downstream 574309 30343531 ~ 30344876 (-) True G107525
TU126682 other downstream 1205193 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3762045 27152312 ~ 27157140 (-) False si:dkey-151j17.4

Expression Profile