RNA id: XM_026911248.2


Basic Information

Item Value
RNA id XM_026911248.2
length 4763
RNA type mRNA
GC content 0.52
exon number 24
gene id cntn5
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 31107690 ~ 31236932 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAGACAGCACGAGCTCTTACTACGACCTGAACGGATGCGCGTgcatctctctcgctctctgtctctccctcgcGCTGTCATTTTAACGTTCCAGCGCGTTTATACCGGGAAAGCGGAACGGATGTGAggtcatcatcttcatcaccttcatcatcttcattatCTTTATCTCAGAGGAGGTAAAAAATCCGCAGGCGGAGCTCGAGCGGCGGAAAACACGCGCGATGTGTCTGTTCGGGCGGTGAAGATTCACGCGCTGAGAGTCTGTTTCCTTCCGCGCGCACTCCGGGATCCGGTCTGGGACTTtctactaaacacacacacacacacacacacacacaacaagccAGTCTGAGAAGCGGAGTGTGTGTCGTCTTTCCGCAGAGATTCAGAGCATCACTTTAATGAAGACTCACTAACCGTGTTTCAAAAGGTGACCCTTCACAACAAGTATGGGGTCACCATGGAAACCACTTCTGCTGCTGTCTATCATCAGCTGCTTGACAGACTTTGCCAGATCGGTGGCAGGCAGACCGGCGTCGTATGCGGCCGTGTTGAGGATGAAGCCGGAcagctcctcttcctcacttCTGAACCCCAGGACGAGGCTGAGACAGGACCGCGGTTCTTTTGTCCAGGACTGGCCTCCGTTCTCCAGACAGGGGCTCTCAGCTCTCAGCTTTCAGGAGGACGATCACAGTGAAGAAAGTGAAGAATTCGGGCCTGTGTTCATCCAGGAGCCGGACGACGCCATCTTCTCTCTGGACTCGGATGATAAGAAAGTTATAATGAACTGTGAAGCGAGAGGAAATCCTGCTCCTACCTACAGTTGGCTGATCAATGGAACAGATGTTGACATTGAGGCGGACTCACGCTACCGTTTGATTGATGGGAActtgataataataaatgccaGCGAGGCCACGGATTTCGGGAAGTACCAGTGCAGAGCTGAGAACAGCATCGGCGCTGTCCTGAGCCGGGAAGCCTTCCTGCAGTTCGCCTatCTCAGTGCTTTCAGCGGGCGAGCGAGAGGAGGCGTGTCCGTCAGAGAAGGTCAGGGAGTAGTGCTGATGTGTATGCCTCCTCCCCATTCACCCGAGATCATCTACAGCTGGGTGTTCAACGAGTTTCCATCTTTTGTGGCTGAGGACAGCCGACGCTTCATCTCACAGCAGACAGGAAACCTGTACATCTCCAAGGTGCAGCCCTCAGACGTGGGGAGCTACATCTGCCTGGTGAAGAACATGGTGACCAACGCCCGGGTCCTCAGTCCTCCTACACCACTGACACTCAGAACAGATGgtgTAATGGGGGAATATGAGCCCAAAATTGAGGTGCACTTTCTTCCTACAGTCCTCACTGCTAAAGGAACGACGGTGAGACTCGAGTGTTTCGCTCTTGGAAACCCCGTTCCAACCATCACATGGAGGAAGATCAACGGGAACATCCCGAAAAAGGCTCGACTCCGCAAGTCTCAGGCCGTGCTGGAGATTCCCAACATCCAACTGGACGATGCAGGAAGTTACGAGTGTAAAGCAGACAACTCCCGAGGAGGAACGGCCTTCAGGGGACACGTCCAGGTGTACACGGCGCCGCAGTGGATCAGTCTGATAAACGACTCTCAGCTGGACAGCGGTGATCATTTACACTGGGAGTGCAGAGCCACCGGCAAGCCCCGCCCCTCTTACCACTGGTTACGCAACGGACAACCACTgaacacacagAGTCGAGTGCAGACGCTGAACGGAGAGCTGATCATACAGAAAGTTCAGCCGGACGACTCGGGGATGTACCAATGTGTCGCTGAGAACAAGTACGGAGCCATTTACTCCAGCGCTGAGCTCAAAATCCTCGCCTCAGCTCCTGTGTTCAGCGCTAAAACAGCGACCGTCATCGCCACTGTGGGTAAAGACGTTTCTCTGGAGTGCAGACCTCGAGCTTCACCCAAACCCAGAATCACTTGGAGGAAAGGAGACAGAAAAATCCAGAGCAGCCGGAGACTTGTGGTTCTGCGCAACAGCACGCTGCAGATCATCAACACGAGCCGTACGGATGAGGGCAGCTACGTGTGTCGCGCTGAGAATCAGTTCGGCTCGGCCGAGATGACGAGCTCGCTGCTGGTGAAAGAGGCCTTGAGGGTGGATCTGAGCCCGAAGCGTGTTGAGGTGACGGTGGGGGAAAGCGTGGTGCTCAGCTGTAAAGCCACACACGACCCATCGCTCGACATCTCCTTCCTCTGGCAGCTCAACAACCTGCCACTGGACGCCCAGCAAGACGACGGCCATTTTGAATACATCAGAACACAGTCTTCCACAATGGATCTGATGATCAGAAACATCCTCCTGAAGCATGCTGGGAAATATGGCTGCCGGGTTCAGACGAGGGCTGACACGGTCCTAGCCGAAGCCGAGCTGCTCGTCAGAGGTCCCCCAGGACCTCCTGGAGTGGTGATCGTGGAGGAGATCACAGACACAACAGCCACATTGTCCTGGAGTCATGGTGCAGACAATCACAGTCCCATCAGCACCTACAACCTGCAGGCTCGCAGCCCCTTCTCCTTGGGCTGGCAGACAGTCAAGACAGATCCAGACCCAGTGACGGGAGATATGGAGTCTGCCATGGCAGTGGAGCTCAACCCCTGGGTGGAGTACGAGTTCCGGGTCGTGGCCAGCAACGCCATTGGTACAGGTGACCCCAGTGCACCATCCAGGCCGGTCCGAACCAAAGAAGCAGTTCCGTCAGTTGCTCCAGCCAACGTGAGTGGAGGGAACGGCCGCCGGCACGAACTCGTCATATCCTGGGAGcctGTTTCTGAAGAGTTCCAGAACGGAGATGGGTTTGGCTATATCGTGGCGTTTCGCGCCAACGGGACACGAGCGTGGAAGGAAAAGATGGTGACATCAGCAGACTCCACCACGTATAAGTACAGGGACGAGACGTTCCCGCCTCTCACCCCATTTGAGGTGAAGGTGGGCGTGTACAACAACAAAGGAGACGGACCCTTCAGTAAAGTGGTCACTGTGTTCTCCGCAGAAGGAGAGCCACGGGAAGCACCGTCTGATGTGAAAGCATCTGCCATGTCCTCCTCTGAGGTCAAGGTCATGTGGAAAGCACCCAGTCCTGGGCCGGGAAGACCGCAAGGATACgagGTGAACTACTGGAGGGACTCGGAGCAGGAGGAGGcagggaagaaaaagaggaCGGTGGGGAATGAGACGGTGATGCTGATTTCAGGACTGGAGGGGAACACGCAGTACCACATCACGGTGAAGGGCTTCAACAGCATTGGGCAGGGACCACCGAGCGCCTCCATCCGAACCAGCACCAAGAAAAACCctcctAGCCATCCACCCGCCAATGTGATGTGGATTCAGGAGGGGAATAATGTCTCCTTATCCTGGGACCCAGTGAAGGCTCTGGGCAACGAGTCGGATGTTATCGGCTATAGGGTATTATTACGTCAGGAGGGGCGTGGTCACAGTCAGGTCATGAGGACCCCGAACACGGCTGCGGTTCTTACGCTACCAGAAGGAGGAACTTATATTATTGAAGTGTGTGccatcagtgaaggaggcgagGGAGCGGCCAGCTCTCAAATCAGAGTGCTCACTTCCTCAGGTGTGAGGGCGAAAAGTCAGCAGCGTTCTGTGCATAATCTGCCATCAGGCTTCGCATGGACTCTTCTACTCCTGACGGTCCTGATGGTGCCTTCTGCCCCGTGGTGAGGCATCTTCACCATGTAACTCTGCCCCCGGTGTGGAGGGAATGGACTCTCCCTGCACCGTACAGACTGCCGTGTTGGCCTGAACCATCTCCAGGACGTAGGAGTTGGCCAAGTGCAAGTGCTTCTTTATTCAACCAGGAAtccatcaatttttttttatgctactGATTTCTGTTGCAGTTTTTCTTCTCATTATCAGTGTAGTATCGTGCATTGTGCATAGAAAGTCCTTATATTACACAAACTGCTGAACTTCTATCAAATCCAGCCTTCACTGCGCGCCGGGAACACTGAGGACTGAGACTCTTCATCTGACACGTCTCCATCCCTTTAACCCATGGCTGCCTAAACGAGTGAAGCCATTAAAGCTCAGCTTAGATAAGTGCATTGTTTCTTATTCACACAGTTAGAAAGACAGCAAGATGgaggacaagaagaagaaaagaagaaacatacaaacaagaacaacaacaatgaatTGTTTTTATAGTGCCGAGTCTTTCCAGACTTCCTTTTTGTACATCATGTTAATTTAAAAGtggtttgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagagggttttctatgttgtgtgtttttgtcagtTTCTGATGCACATGCAAGGCTGCTTTGGGTCCGGGTGGGTGTGGTCATGGTAGGCTTGAGGGCGGGGTTTTACCTGTAGTGCCCAAACGCATCATTAGACACAGAGAAAGGATCTGTGATGTCATGGTGAACGCTGAAATAAATGTGACGTATATTTTTCACCGGGGTTTGCTTGCACTCTCTGTTCTGAGGAGAAGGTTGCCTTTATGGTTGCTGATGGTTTTTTCTGTAAAGACCTACACACAGAACAGGAGCAGCAGGTATAAACGCTACTCCCCCGTATAAACACACATCAGTAAAAGGTTTTATTTCTGgctccacatcagattatttgctgttaaatcttttaaagtgaatcattttgtatttttgtagaatcgagcgcaacagcaccaccaacaggccgtaataaaaacaca

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127509 lncRNA downstream 108300 30996273 ~ 30999390 (-) False LOC117597523
TU127511 lncRNA downstream 108300 30996273 ~ 30999390 (-) False LOC117597523
TU127514 lncRNA downstream 108300 30996273 ~ 30999390 (-) True LOC117597523
TU127505 lncRNA downstream 108300 30998319 ~ 30999390 (-) False LOC117597523
XR_004578306.1 lncRNA downstream 108364 30998773 ~ 30999326 (-) False LOC117597523
TU127657 lncRNA upstream 36280 31273212 ~ 31273477 (-) True G107967
XM_034304998.1 mRNA downstream 39211 30987255 ~ 31068479 (-) True LOC113524886
XM_034304999.1 mRNA downstream 39521 30987255 ~ 31068169 (-) False LOC113524886
XM_034305067.1 mRNA downstream 140561 30961366 ~ 30967129 (-) False gemin7
XM_034305068.1 mRNA downstream 140589 30961363 ~ 30967101 (-) False gemin7
TU127465 other downstream 288076 30816579 ~ 30819614 (-) True G107803
TU127397 other downstream 375659 30729958 ~ 30732031 (-) False bbs10
TU127077 other downstream 762814 30343531 ~ 30344876 (-) True G107525
TU126682 other downstream 1393698 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3950550 27152312 ~ 27157140 (-) False si:dkey-151j17.4

Expression Profile