RNA id: XR_003402763.2


Basic Information

Item Value
RNA id XR_003402763.2
length 3778
RNA type misc_RNA
GC content 0.49
exon number 5
gene id si:cabz01090165.1
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25385325 ~ 25548928 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGGAAGCGTGACCAATTCAGGTTTCAGTGGCAGGACAGCTTCTCTCTAGCCAGCTCTACTCTCTTATCACAGGGacatttcctccaggtttggACCCCATCTGATTTGGAGAATCTTGGATCCCGTCGGTTCATTTtcgcgtaaaaaaaaaaaaaaaaaaaaaaactccgtCCACCCTGTTGTATGCGTCTCTTCCTCGCCTCTATCCCGTCTCCGCCCTTATCCCTTTGGCGTGCACGGATGCCTTTACAGCGGACTACATCGCTTAGCAGGCGTTATCCGTTCCCAGAGGTCTGATGAATGTAGATGTGGATACTTTGCCAAGGACACCGGGGCTGCGTTACATGAGCCGAGCGCGGGCGCAATGACTCGGAGCGCGTCTCCACTTCGGGAAAACACCCCTCGCTTTGGGCTTCTTCTATAGGCAGCTTGGTTTTTCTGTGTGTCTATATgtctgtggatgtgtgtgtgtgtggatgtaagTGCTGGACTTGGTGCAAATAAAAGAGAGCCGGTGTTCCTCGAAGCTCATCTTGGTGTGTTGGACGGAGTCGAAGTTAAGCGCAAGAGCTCAGAAACCAAGAGAAGCGAAAATAAGGTCAAACTGTAAGGGTGGTGTATGAATGACTGAGTGCGAGCAGATGACTGAGGTGCTGAGGGATCAGGACTACTAGAGTGGAGGCTGTCCCAGCTGTCCTGTGTGGAAGAAAGAGTGACGGGAAAGAGGGAGGACTGAAAGAAAAGGTGCAGCACGGGCCGTCCGCCCCTGCATCGCACAGGAGTGCAGCCATGGAGCGAGTACTCTTGTGCCTGTCTCTGTTGGCGCTGCCCATTGCCGCTATGCTGTGCCCAAAGCGTTGCACCTGTCAGAATCTCCTACCCTCCTACACGGTCCTGTGTGCCAAGACAGGCTTGCTGTTTGTGCCACCCAACATTGACCGGCAGACAGCCGAGCTTCGGCTCATGGACAACTTCATCACCACACTCCGGCACCGTGACTTCGCCAACATGAGTAGCCTCATCCACCTGACTCTGTCTCGCAACACCATCAGCCTCATCCTGCCCTATGCCTTCGCCGACCTGCAGGAGCTCCATGCGCTGCACCTTGATGCCAACCGGCTCACAGCGCTGGACGACACACATCTGCAAGGCCTGGTCAACCTGCGCCACCTAATCCTTGCCAATAACCAGCTGCAACACATTTCCCACGGAGCCTTCCAAGACTTCCTAGAGACTCTCGAGGATTTGGATCTGTCCTATAACAACCTGGTAAACGTCCCATGGGACACCATAGCTCTCCTTGTCAGCGTCAATACACTTAGCTTGGATCACAACCTCATCGAGTTTGTGCCTGAGGGCATTTTTTCCAACCTGCACAAGCTAGCAAGGCTGGATATGACCTCCAATAAGCTGAAGAAGATTCCTCCAGACCCACTGTTTCTGCGCATACCGGTTTATGCAAAAACGAAGGGCTCGCCACTAACAGCACTGGTGCTGAGCTTCGGCGGAAATCCATTGCACTGCAACTGTGAGTTGGTGTGGTTGAGGCGACTGACACGTGAGGACGACCTTGAGACGTGCGCCTCTCCCAAAGAACTAGCTGGGAAGTACTTCTGGACCATCCGTGAGGAGGAGTTTGTGTGTGAACCACCTATGATCACACGCCACACTTCTAAGATGTTTGTAATGGAGGGTCAAGAGGTGAGCTTGAGGTGCAGGTCTGTGGGAGATCCTGAACCTACAACACACTGGGTGAGTCCAGATGGCAAGCTGATTGCAAACACGTCTAGAACAACCGCTTATGAGAATGGATCTCTGGACATCTTTACAGCCACTGTAAAAGATTCAGGAGTGTTTACCTGTATAGCATCCAATGCGGCTGGAGAGGCCACTGCCCCTGTGGAACTTGTGGTGAACCCCTCCCCACATTATGACCCTAAACTTGAACCCGAACCAGGACCCTCAGACATGCCCACGTCCATCAAGTCAAACAGCAGTGGGGGGCAGACACGAGTGGAACAGCGCGTCAGTGTGACTGAGATAACAGCCACATCAGTCACCATCCGCTGGCCTTCACAAAGCCATATCCCAGGTGTTCGCATGTACCAGATCCAGTACAACAGCTCCACAGACGAGTTCCTCATTTACAGGATGATTCCAGCATCGTACAAGCTGTTTCAGCTGAGTGACCTAGCCTCTGCGCGGGACTACGATCTCTGTGTCTTGGCTGTTTACGATGATGGAGTCACTGCACTCACGGCTACGCGCCTTGTCGGCTGCGTGTCATTCAGCACTGAGCGTGAGTACCACCACTGCCGCTCGCTCCATGACCAGTTCCTGGGTGGCACCATGATCATCGTCATTGGAGGCATCATCGTGGCCTCTGTGCTcgtcttcatcttcatcctgcTAATGAAGTACAAGCTGCACAGCCAGCACTACAAGCAAAAGGCAGAGCGCGTCAGCAACGTCTGCTCACAGACCAACGGCGGCCAGCAAGGAGCAGCATCCAACCCTCCACCACCCCGATCGTCCTCTTCCTCCGCTTCGGCAAGTAAACCATCCATCCTTCTCAGTCAGGAGAGGCCAGAGAGTTATGGTGCTCAGGAGGGAGGCTATGGGGCACTCAAAGGCACCACAGTGGTGGACTTAAATCCAGAATATGGAAAGTCAGTCAAAGAAGAAGACTCAGTATCGCAATAACACAGGGTCAAATCCCATCCCCCCATCCTCTCCTCCTTCccatcttctgtttttttttctggtgctGGGATATCTCTGCCTTACTGAGGATTTCATGTCCAAGGCAAACTCACTCTAGAGGGAAAATTAAATTGCCTGGGATTGGAGCCAATACACTCCTGGGAGGAGAGGTGGGTGGAAGCCAGTAACTGTTTTCAGTCCCTTATGCAAGCTTCTTAACAAACAATGGAAATTAATGAGTCTGTTTGGAGCATATGGGCAAAATTTTGTCCTACACCAAGGCCATCACTCTTagagaaaataatatgaaaacatGACCATTACTATTGGACCACACAACTGAACACATCACTAATGGAATCTGTCGCTACTCTTTCGCTCACCTGTGGAAACTAAATTGACACCATGATTCATTCATGCTATTCAATCACTGTAGGATGTCCAGGCTACGGAAAATGCAGAGTCAAAGGAATGTtctgaaatatttcacatttctgaATGGAATGTGAAATGTTCCAATTTGATGCATAACGCTCCATGGAAATCCAATATTTCCACAGGCCATTGAAGTACAGACATACTGATAGCAAGTATCCATTCTGGTGTACTTTTGGGGCACTTTATGATATTCCACTCTTCTATTCTCTTTCAATCACTCTGACTTTTCTCCCTTTTAAAGGGAACTGAACATTGGACATTTATTCAACTGGTAATCAGGCATGGTTGTACATGTGCTTCGGAgattcgtttaaaaaaaaagaaaagacgtCAACACAGAGTTTTCTTAGTCACCATGCACTGATGCATTTATATTTCACATAtatcaaaaaggaaaaaacattttaagagcCCAGACACTGACCTTCATAGACATTTAAGACCATGTCCAATACAAAACAGGCCTCTTTGAAAGGTTGCCTGATGAAATAaatactgtttctttttttttttttcctccaattaactgtgtatgtatttgtatgtgaGGTAAACCTTCAGCCATCTCTGATTTGAATTACACGTGAAAATAATAAAGTCCTCGGATGGAATTTTATGCTTTCATAGATACTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123932 lncRNA downstream 140081 25243472 ~ 25245244 (-) True G104750
TU123936 lncRNA downstream 141308 25243472 ~ 25244017 (-) False G104750
TU123929 lncRNA downstream 143555 25239110 ~ 25241770 (-) True G104747
XR_004578344.1 lncRNA downstream 170535 25192057 ~ 25214790 (-) True LOC117597583
TU123870 lncRNA downstream 234169 25113977 ~ 25151156 (-) False G104694
TU124309 lncRNA upstream 284351 25833279 ~ 25836038 (-) True G105092
TU124447 lncRNA upstream 538552 26087480 ~ 26087695 (-) True G105219
TU124618 lncRNA upstream 771104 26320032 ~ 26320770 (-) True G105379
TU124743 lncRNA upstream 1033366 26582294 ~ 26608329 (-) False LOC113526510
XR_004578318.1 lncRNA upstream 1048506 26597434 ~ 26608339 (-) False LOC113526510
XM_026913337.2 mRNA downstream 38361 25344225 ~ 25346964 (-) True LOC113526369
XM_034305278.1 mRNA downstream 65632 25304736 ~ 25319693 (-) False LOC113526534
XM_026913665.2 mRNA downstream 65632 25304736 ~ 25319693 (-) False LOC113526534
XM_026913666.2 mRNA downstream 65643 25304736 ~ 25319682 (-) False LOC113526534
XM_026913667.2 mRNA downstream 75377 25304736 ~ 25309948 (-) True LOC113526534
XM_034305190.1 mRNA upstream 290542 25839470 ~ 25870271 (-) True LOC113526366
XM_026913764.2 mRNA upstream 341371 25890299 ~ 25905340 (-) True loxl1
XM_026914215.2 mRNA upstream 645122 26194050 ~ 26292607 (-) False cd276
XM_026914216.2 mRNA upstream 658021 26206949 ~ 26292607 (-) True cd276
XM_026913597.2 mRNA upstream 775453 26324381 ~ 26464945 (-) False zgc:158464
XR_003402792.2 other downstream 622544 24752612 ~ 24762781 (-) False clasrp
TU123617 other downstream 673957 24623516 ~ 24711368 (-) True G104473
XR_004578330.1 other downstream 1774877 23590945 ~ 23610448 (-) True mmp23bb
XR_004578321.1 other downstream 3078556 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 4372225 20995341 ~ 21013100 (-) False sertad3
TU124615 other upstream 690402 26239330 ~ 26241005 (-) True G105376
TU124747 other upstream 1020157 26569085 ~ 26608329 (-) False LOC113526510
TU125182 other upstream 1603384 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU126682 other upstream 4153224 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 4794603 30343531 ~ 30344876 (-) True G107525

Expression Profile