RNA id: XM_026913330.2


Basic Information

Item Value
RNA id XM_026913330.2
length 2056
RNA type mRNA
GC content 0.46
exon number 12
gene id luzp2
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29971467 ~ 30064366 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGAGAGAGCcgaggaagagagggaggagggaaaGAGACGAGGAGAGTGAGGAGAGCagaacagaaagaaacacacagagcacaCGGAGAGCAAAAGAGCGAGAGATGAAATTCCTCGGAGCCGTCTGCATCCTTCTCTTCCTGCCCGATTTCAGCCTCAACAGCAGcTATGAAGTGCTGGAGAAGAAGCTGAAAGAGGCGTTCACAGAAAGAACCGGGATTTTACGGCAACTCTCGAAAACGTCGAAGGAGCTGGACAGCATAAAGGGCAACCTGCAGTCAATGAAGAATGAGGACTCAATGCCCAAAAAGGATGTGCAGAGGATTCTGGAGCTGAGTCACAAACAAAGAGAAGAGATGAGATCACTCCAGGCAGCCCTTCAGAAGCAACTGGACGAGGCGGCAGAGCGAGCCGAGAAACATCAAGCCACGATCAAGTTCCTGAAGatggaaatggagaaaaagaccAAAATCATCAAAGACCTACAGCAGGAGaACAAAAGCTTGAAGAATAAACTCCTTTCTGGGAATAAGCTGTGTGACATACATGCAGAAGAGTCTAAAAGAATCCAGGCCCAACTGAAGGAGCTGAGATACGGCAAAAAGGATTTAATTTTCAAGGGTCAGCAGCTCATGGACCTGGAGAACAAGCTACGAGTGGCCAAAGAGGAACTGGAGAAAGCAGCGCTGGACAAGGAGTCCCAGCTGAGGGCTTTGAAGGACACGGTCCATATCTGCTTCTCATCTGTCCTACAAACCCAGACGGTGGATTTACACAGACTGCCGGCCACGCCCACTCACTTGATGCGATACTCTCCGTTTGTCAATAACTCAAGAGTCACCTTCAGGGAGCCGCACATGAAGGACATCCCAAAGGTTCCCAGAGTCACAACAAGTAAATCTCCTGTGAACATGGAGCTAATGAGGAGAGACGGTACAGGAGTCAAGGCCTGCCAGATGGTAAAGGTGGGTGCTGAATGTTCCCAGAATCAAACTGAGAGAACATCTGTGGAGAAATCAGACCAACCTGCGCACCACCAGCCGGGGACTCTGGAACACACCGACGCACAGACGTCCGTGAACAGCGGGAAGAtggagggaggaaaaaagacaCAGCTGGACAAACACAACTGAGACACGACTAAACAACACAGCTGGATAAACACGACTAAAAGACTTGGCAGATTTTTCCGTGTGGTATCAGTTTAATCAGTTTAACTCCCCTGACCTGTCACTCACAGAGAatagaaagcacacacacacacacacacacacacacacacacacacactgacacacacactgtaagtaTCACTGCTATTGTAGAGAAGGAACCCCAAATGTCCGAGTTTGACCTGAGATCCAGCAGCTTAGTACAACGGCATGCACTATAGACCTTTAGGTTTCTCGTTTATAACCGTACtggtcttttctttctttcttttttataataacACGTCTGTTATTTTATCCTTTTGAGTTGTTTGGGATTTCTCCAGAGATTGTGGACATCTTTTGATTTGTGGTATTTGTAGTTGAGAACTTTGTGGACTTGCACCACAGGCCGGAGACACATTCACTCGTTGAATCACATGCACGAGCTTCTAATTCACTTCACTCTCGGCCACAGTTTGCCGAAAGTTGATAAAAGAAGCAAGGATATGGATCTGACATCACACTGGTTCTGTTTTGAATTACCCGGTACTAAAATTCCTCTTAAATTACGCAAGAACTGTTGAAGAGCGAAGatataaatgtaaagatttGGTTCTTTTTTGTGGTGGTGgtacttttaatttaaactctTCCCTTTTCTGTATTCTGAAGTCTTAGTATAAATCGAGTAAATCGAGTTGGCTGGCCAACTTTGATCACTGAACAACCTGAAAGCTTTTGGTGCAAgaatttaaagagaaaaaggaaaaaaaaaacagactcacAGTGAGTCGTCTCCCTGAGAATGATGTGCCATGCACTGAGGACTTAATCTACTGCTACATGTCTCGGTTTCTCTACCTTCCTGTGTCCTTTCAATAAAACCGTGATTTTCACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126731 lncRNA downstream 48274 29922742 ~ 29923193 (-) True G107217
TU126723 lncRNA downstream 126610 29765376 ~ 29844857 (-) True G107210
TU126702 lncRNA downstream 247090 29724114 ~ 29724377 (-) True G107191
TU126704 lncRNA downstream 263567 29680263 ~ 29707900 (-) True G107193
TU126679 lncRNA downstream 293958 29659641 ~ 29677509 (-) False hipk3b
TU127060 lncRNA upstream 245481 30309847 ~ 30311846 (-) True G107510
TU127084 lncRNA upstream 299261 30363627 ~ 30391458 (-) True G107532
TU127085 lncRNA upstream 303972 30368338 ~ 30369188 (-) True G107533
TU127088 lncRNA upstream 304521 30368887 ~ 30406964 (-) True G107536
TU127127 lncRNA upstream 356886 30421252 ~ 30423338 (-) True G107574
XM_034305169.1 mRNA downstream 204720 29728084 ~ 29766747 (-) False lrch3
XM_026913659.2 mRNA downstream 204720 29728085 ~ 29766747 (-) True lrch3
XM_026913660.2 mRNA downstream 204721 29728086 ~ 29766746 (-) False lrch3
XM_026913662.2 mRNA downstream 204721 29728086 ~ 29766746 (-) False lrch3
XM_026913661.2 mRNA downstream 204722 29727090 ~ 29766745 (-) False lrch3
XM_026914460.2 mRNA upstream 72645 30137011 ~ 30256084 (-) False tspan4a
XM_026914459.2 mRNA upstream 72645 30137011 ~ 30222358 (-) True tspan4a
XM_026914034.2 mRNA upstream 291155 30355521 ~ 30359530 (-) True tnni1c
XM_034304953.1 mRNA upstream 362814 30427180 ~ 30433055 (-) True miox
XM_026913453.2 mRNA upstream 372663 30437029 ~ 30444319 (-) True adm2b
TU126682 other downstream 257475 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 2814327 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 3363138 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 3730462 26239330 ~ 26241005 (-) True G105376
XR_003402764.2 other downstream 4486346 25385325 ~ 25485121 (-) False si:cabz01090165.1
TU127077 other upstream 279165 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 665592 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 752213 30816579 ~ 30819614 (-) True G107803

Expression Profile