RNA id: XM_026913557.2


Basic Information

Item Value
RNA id XM_026913557.2
length 3668
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC113526489
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23634077 ~ 23678458 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGGGGAGACGAAAATTATCTACCACCTGGACGACCAGGAGACTCCGTACCTGGTCAAAGTGCCAGTCCCTGCCGAAGAAGTCACTCTGGCCCACTTTAAACAAGTCCTCAATAAACCCAACTATAAATTCTTCTTCAAGTCCATGGACGATGATTTCGGGGTTGTAAAGGAAGAGATATCAGACGATAACGCCAAGTTGCCATGTTTCAACGGCCGTGTAGTGTCATGGttggTCTCAGCAGATGGTTCTCACGGTTCAGATGGAGGTTCAGTGTGTGCAGAGACTCAGGCCGATCTTCCTCCTCCATTAGAGAGGACAGGGGGCATCGGGGACTCCAGACCGCCCTCCTTCCAtgCCAATGCAGCAGGCAGTCAGGACAACCTGGACAACGACACGGAGGCCGACGTCGGCACTTCAGTGCGGAGAGATAGAGAGCGAGACagggatagagaaagagagagaccacGCAAGAAAGACACCCACGAGCATGGAGGCAGGCTGAATGGTCACTCTCGGCCCGAGCGCAGGCCTGAGATTGCGGGTTATGAGACCTCCTCCACGCTCATGAGCAGCGAACTGGACACCACCAGCTTCTTCGACTCGGAGGAGGATGACTCAACGAGCCGCTTCAGCAGCTCTACAGAGCAAAGCACATCATCACGGCTCATGAGACGACATCGCCGACGCCGACGGAAAACCAAACCACCACGGATGGAGAGGTCGTCCTCCTTCAGCAGTATCACTGACTCCACCATGTCTCTGAACATCATCACTGTCACATTAAACATGGAGAAGTATAACTTCCTGGGCATCAGCATCGTGGGTCAGAGTAACGagagaggcgacggtggcatcTACATCGGCTCCATCATGAAGGGTGGAGCAGTAGCAGCTGACGGACGCATCGAGCCAGGCGATATGCTACTCCAggTGAACGACATTAACTTTGAGAACATGAGCAATGATGATGCTGTGAGAGTCTTGAGAGAAATAGTGCACAAACCAGGcccTATCACGCTGACTGTGGCTAAGTGTTGGGACCCAAATCCCCGCAGCTGCTTTACCTTGCCTCGCAGTGAGCCAATCCGCCCGATCGATCCCGCTGCCTGGGTGTCTCACACGGCTGCGATGACGGGGGCGTACCCAGTGTACGGCCTGAGTCCTTCCATGAGCACCATCACCTCCACCAGCTCCTCCATCACCAGCTCCATTCCAGAGACTGAACGCTTCGAGGACTTCCACTTGTCCATTCACAGCGATATGGCAACTGTTGCTAAAGCAATGGCGTCTCCAGAATCAGGGCTGGAGGTGCGAGACAGGATGTGGCTGAAAATAACCATCCCAAATGCCTTTATAGGTTCAGATGTGGTGGACTGGCTCTATCATCACGTGGAAGGTTTCACAGACCGACGTGAAGCACGGAAGTACGCGAGCAACTTGCTGAAGGCTGGCTACATTCGCCACACTGTCAACAAAATCACCTTCTCCGAGCAGTGCTACTACATCTTTGGAGACCTCTGTGGCAatatgGCTAATCTCTCCTTGCATGATCATGACGGCTCTAGTGCATCTGACCAGGACACTCTTGCCCCCCTGCCCCACCCAGGAGCTGCTCCGTGGCCCTTTGCTTTCCCCTATCAGTACCCCCTCCCTCAGCCCTACAGTCCCCACCCTGTGCAAGAGCAAGCCTACAGCtacacaggaggaggaggaggaggaggaggaggaggaggcagcgCCGGCAGCCCACACAGTGAAGGGAGTCGCAGCAGCGGTTCAAACCGCAGTGGTAATAAGGCTGGTGCGTTGGAGACAAAGTCGGGCGGCAGTGGTAGCGagactgagaaaagagagaaggcaCCTAGTGAGCGCTCAGCAGCGCCCCCTAGTGAGCACAGTATCCACAGTGCCCACAGCGCTCTCTCACAAGGCCAAAACTCATCGTACGGACCTCCTGCAGCTGCCGCACCGGGTTCTCCACCAGGCCGAGACCTGGCATCAGTGCCCCCCGAACTCACAGCGTCCCGCCAGTCCTTCCGCATGGCCATGGGCAACCCCAGCGAGTTCTTCGTGGATGTCATGTGATGCACTTCAGGTGACTGATAGACACCTGACACTCATGTGGATAGAGAGATTTCTGGAAAATGTGTTAGTTACCTTTGTAAGTGATGAAGGGAAGGGGTGCCAAGTGTTCCATTGCATTGTCCCTCCTGTGTCCTGTGGCTTGTACTTTCTTCAGTGAAGAAGACTGGGATGGATGGAGCTCATATCCCTGTGTCCTGCAGAAGCTCTGTGGGATAGAGGGATGGGCTCAGAGTGGCGTGAATACTTTCTGTGTGGtgtccttttattttttttgtcctgcatTTCTGTCTGCCTTCTTCCTTTTGCAGTTTCTTAACCTCATCAAGAGCCGTTTTTATCAAAGACTACAAACAGAGACCAGGGAGAGGGAAGATGGAGGTAGCGCCTCTCTCTGTGGCTTTTGCTTTTAAAGGATGAAGTGAAATAATTTCataacaattcaattcaaaaaaGATGCTATCATGAGAAACTATAGACGattgttttatatttgactTGTCTTCTTGTATGTTCTCTGAAGAGTGGGAAAGAGAGGGggtaaaaacagtgttttaattaCAGTGGGGTCTCAGGGGTGCTAGTTCCAGCCAGAGGCCCCTTATTTGTTCTTAAAGACCAACGGGGGTCTAAGGTGTTTACTGTATTATGAAGCTATATGGAGGAAAGTCATGTCATGTCTAGTTGTGTTAAACATAAATTTGACACAAAGATCCATCCCAGGCTGTGAAGAGGCGTGTCTTTGTGTTTAGCTAAGAACCTGTCATCATTCAAAGAAGGACATCTAGTGTAGCTGTGAAGACGACAGTGTTCTCAGTGCGAGTTTCTTTATTTCCCAAAACCGTGACTGCATTGACTAGCTTTGCTTTAAAATGAGGCTAGTACCAGGTATTTGTTTATAGATGCAGTTTTAATGTAGCACACAACTTGCCTACAAGAAAACTGGGAACATTTAAATGTCACTAAAAACAATCATCAATCATTTGTCCAAATATTAATACTTTATCCAAAACAGGGAATCAGCAGATTGATGAACAGAAGACAACTATATTAGAGATTCCCAATGCTGTACTCTCAGAATTTAAGTTCCTACTAGAGGAAGAATCACTGTGTCATCTTTTCCTGGGTTTGATTACAATATCACAATACATTTTGGACATTGAAATAACAATATGTGCAGTAGACTGTGTACATTTTCCATTTAGCAGAACAGGGACACACTCACGCCACAAAGATTGGGAGCGTCATTAGCAAACATTTCAACTAAGAATGTTCTGTTATTTTAGGAGCTTCAGTGTAATTTAAATACTGGTTAAAAACCATTCATGAGTTGTTACCGAAATTGggattcatatttatttatttggttgcCAGAGAGATCATTTTGGATCCAGACTAAGCATGCgtccacacacacttttcatcacgttaacagaaataaatgaaacttgAAACCCTAACTGAAATAACTGAAAACTTGtcataacttaaaaaaaaaaatctccaggtTTACTGTGTGTTCTTTCAGAAGGATTTGACCCAAAACATCCACAAAGGAGTCACTGGCTTTGTATATATCTAAA

Function

GO: NA

KEGG:

id description
K02353 DVL; segment polarity protein dishevelled

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122848 lncRNA downstream 58398 23572589 ~ 23575679 (-) True G103820
TU122845 lncRNA downstream 120749 23512157 ~ 23513328 (-) True G103817
TU122741 lncRNA downstream 303976 23329676 ~ 23330101 (-) True G103727
TU122733 lncRNA downstream 310665 23321663 ~ 23323412 (-) True G103719
TU122712 lncRNA downstream 358795 23270144 ~ 23275282 (-) True G103702
TU123014 lncRNA upstream 54412 23732870 ~ 23738739 (-) True rpl35a
TU123018 lncRNA upstream 54412 23732870 ~ 23738739 (-) False rpl35a
TU123411 lncRNA upstream 736442 24414900 ~ 24464578 (-) True G104291
TU123423 lncRNA upstream 801903 24480361 ~ 24484072 (-) False sipa1l3
TU123422 lncRNA upstream 801933 24480391 ~ 24484072 (-) False sipa1l3
XM_026913881.2 mRNA downstream 1710 23615371 ~ 23632367 (-) True ap2m1b
XM_026914176.2 mRNA downstream 23629 23594509 ~ 23610448 (-) False mmp23bb
XM_026913977.2 mRNA downstream 51997 23578039 ~ 23582080 (-) False mtif2
XM_026913976.2 mRNA downstream 52001 23578039 ~ 23582076 (-) True mtif2
XM_026914466.2 mRNA downstream 63055 23559123 ~ 23571022 (-) True eif2a
XM_026913558.2 mRNA upstream 5660 23684118 ~ 23699707 (-) True rnpepl1
XM_026913914.2 mRNA upstream 23326 23701784 ~ 23731415 (-) True abcc5
XM_026914238.2 mRNA upstream 54732 23733190 ~ 23738779 (-) False rpl35a
XM_026913499.2 mRNA upstream 87079 23765537 ~ 23786329 (-) True depdc7a
XM_026913498.2 mRNA upstream 87079 23765537 ~ 23781393 (-) False depdc7a
XR_004578330.1 other downstream 23629 23590945 ~ 23610448 (-) True mmp23bb
XR_004578321.1 other downstream 1327308 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 2620977 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 2667167 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 3653818 19980069 ~ 19980259 (-) True LOC113527007
TU123617 other upstream 945058 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 1074154 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 1706867 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 1706867 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other upstream 1706867 25385325 ~ 25485121 (-) False si:cabz01090165.1

Expression Profile