RNA id: XM_026913564.2


Basic Information

Item Value
RNA id XM_026913564.2
length 2802
RNA type mRNA
GC content 0.51
exon number 18
gene id rasgrp4
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25155182 ~ 25182107 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tactcacgcACATGACAGTTCCCTTATCTCTCAGAGCCAGTGCTTGTGTTTGAAATAGGGACTTGTGTATTGACCAGTTTTGGCTCGCTGCTCATTTGGAAGATTCCCTTCTTGACACACTTTATTTCGTTGACAGTCTTTCACCACTCTGAACTTGTCGTCGTGCGAGTGggagtttttcttcttctttttttttttttcttgtggtcGGTTGGTTTGTTTTCGCTCTGCTGTTTACTCAATTAGGTAGAGGTgtggtagagagagacagagaaagagatctTGCAGCTGCTAGTGTACAGGTCTGGCGTTCTGCGTGTTGCTGAACAGGACAGAGAAGATCCTctcaggctgagagagagagagaggttggcCTCAGCGTCTCTGTTGTGGGCATAAACACAGTGTGACACGGCCAACCGATCGACAGCACAGCCTCATGGGAAAGTAGGGCCCCAGGACTTGTGAACAGATGCCCTTACGCATCCAGAGAATCAGCGCAGGAGTTCAGAAGGGAGAAGATCATCCTTATGCCATGATTCGAAAAGAAACCAAAAGATAGAGACTCCTGCCGTAGGGCTCAGCTTTGAGATCCAGGCGATGTCGTTTCGCGAAGATCTTCGCAAAGTGAGGAAGAAGGCATCGTTCTGCGTCACTCACTGGACACAGCAGAACGGCTCCAGCAACACCTCCTCACAGAAGTCACGTCAGGAAGGAGGGAGCATGAAGAAGACCAGGAGGCCAGTACAGAGGAGGATGACCTGTCCGAGTCCTCACGAGATCAGCCGGGCACTGCAGAGCCCCACCATACCTGCGAGTGCCCGTGCTGCCAGTCTGGACGAGCTCATTCAGCGCTGTCTGCACTGCTTCGACTCTGAAGGGAAGTTAATCCGAGGCATTCAGCTGGTCAATATGACTCTGATGATGCACAACTGGGTCGTGCCGTCACACACCTTCGCCCATAAACTGCTCTCTCTCTACAAGGATTGTCCTGTGGAGAAGAGAGCCCAGAGGAGGCCACAGATCTGCCAGTTCATCAGGCACTGGATAGCTCATTATCCTCTGATGTTTGAGACGGACCCTCTGTTGGAGGAGGTCATGGGGGATCTGTGTGCTCTGGTCAGGGCTGAAAAGGACTCCCACTGCCAGCTGATTGATACTCCATACCCtaatcCTCCTGCAGACATCTGCTTGGCTCCTTCACCCTCAGTGAAGAAGAGGAAGGTGTCTCTACTGTTTGACCACATGGAGGCTGATGAGATTGCAGAGCACCTCAGTTATCTGGAGTTCAAAAACTTCTGCAGCGTTTCATTCCTGGATTACCGCAGCTACATGGTGCACGGCTCTGTGAGGAATAACCCTGCACTGGAACGCTctgtaatgttgtgtaatggTGTCTCGCAGTGGGTCCAGCTCATGATCCTcaacagacacactccacagcaGAGGGCTGAAGTCTTCACAAAATTCATTCATGTAGCACAGaaACTGAGGTCCCTGCAGAATTTCAACACTCTGATGGCAGTCATAGGCGGTCTGTGTCACAGCTCCATCTCCCGACTCAAAGATACGGCCAGTCTACTCTCCTCTGACATCACCAAGGCGCTGAGTGAGCTCACGGAGTTGCTCTCCTCCTACAGTAACTACACTAACTACAGACGAGTGTACAATGAGTGCAACGGCTTTAAAGTGCCCATCCTGGGTGTGCACCTTAAAGACCTTATCTCTCTGAATGAGGCACTGCCTGACTACCTGGAGGGCGACAAGATCAACCTGGGAAAGCTACAGCACCTATACAGCAACATCAGCGATCTGCTGGCCATCCACAAGTGCAAGCCACCATTCGAGGCCAACAAAGACCTGCTGCACCTGCTGACGCTTTCCCTGGACTTGTACTACACCGAGGATGAGATCTACGAGCTCTCCTATGCCAAGGAACCCAAGAATCCCAAAATACAGCCTGTGACCCCAGTGAAGCCCCCTGTGGTCGCTGAATGGGGGTCAGGTGTGGCTCCACGCCTCGACCCCGACACCATCTCCAAACACGTCAAACAGATGGTGGATTCGATCATGAAGAATTATGATCTGAACATGGACGGCTACATCTCTCTGGAGGACTTTGAGAAGATAGCTGCTAATTTTCCTTTCTCCTTCTGCACTCATGACAGTGACAGGGAAGGAGAGATTAGCAGAGAGGAGATCACGTCCTATTTCATGCGAGGGATGTCAGTATGTGCTAAGCTGGGCTTCAACCTCCACAACCTGCACAACTTCCATGAGATGACGTACAAGAGGCCCACCTTCTGCGACACCTGCCGAGGATTTCTATGGGGAGTCATAAAGCAAGGCTACCATTGCAAAGACTGTGGGGTAAACTGTCATAAGCACTGTAAAGATCTGGTGGCGATGGAGTGTATGAAGTTCCAGGTTTCTGGAGGCTCCTGTCCCTGCACTCCAGGTCCAGGATCCGGGATAAGGACAAAGGGAAACAGCTGGAGTTCTGAGGAAGAAGCATTTGTGTTTCCTCATGGAAATGGACCTGACCACTCCAAAAGTCACTCCACTCCACAGAGCATCGCTGAGAACGCCTCGCTGTCGGACCGCTCCACTCAGACAGACCCGGGAGTGTGGACACCAGTGGCAAACCGCAGAGACCTGCACCATTCCAAAACTCCATCGCCCACTGAGAAGAGTGCCACACTGCCAGTCAGAATGAGAGGTTCATCTGCACCCAGCTCTTTCCTCcaggagaaaatggaggagctCCAATTAAACAAAGACAAACGCAAGGAGCCAGACTGA

Function

GO:

id name namespace
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0001945 lymph vessel development biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123870 lncRNA downstream 4997 25113977 ~ 25151156 (-) False G104694
TU123871 lncRNA downstream 4997 25146360 ~ 25151156 (-) True G104694
TU123851 lncRNA downstream 76666 25043786 ~ 25079487 (-) False tmem91
TU123618 lncRNA downstream 494805 24631658 ~ 24661348 (-) False ttc9b
TU123452 lncRNA downstream 621734 24533737 ~ 24534419 (-) True G104320
XR_004578344.1 lncRNA upstream 9950 25192057 ~ 25214790 (-) True LOC117597583
TU123929 lncRNA upstream 57003 25239110 ~ 25241770 (-) True G104747
TU123932 lncRNA upstream 61365 25243472 ~ 25245244 (-) True G104750
TU123936 lncRNA upstream 61365 25243472 ~ 25244017 (-) False G104750
TU124309 lncRNA upstream 651172 25833279 ~ 25836038 (-) True G105092
XM_026913560.2 mRNA downstream 20897 25106429 ~ 25135256 (-) True ppp1r13l
XM_034305165.1 mRNA downstream 21584 25106429 ~ 25134569 (-) False ppp1r13l
XM_026914350.2 mRNA downstream 76641 25044487 ~ 25079512 (-) False tmem91
XM_026914351.2 mRNA downstream 76641 25044487 ~ 25079512 (-) True tmem91
XM_026914352.2 mRNA downstream 78101 25044487 ~ 25078052 (-) False tmem91
XM_034305513.1 mRNA upstream 113351 25295458 ~ 25301413 (-) True LOC117597607
XM_034305278.1 mRNA upstream 122629 25304736 ~ 25319693 (-) False LOC113526534
XM_026913665.2 mRNA upstream 122629 25304736 ~ 25319693 (-) False LOC113526534
XM_026913666.2 mRNA upstream 122629 25304736 ~ 25319682 (-) False LOC113526534
XM_026913667.2 mRNA upstream 122629 25304736 ~ 25309948 (-) True LOC113526534
XR_003402792.2 other downstream 393372 24752612 ~ 24762781 (-) False clasrp
TU123617 other downstream 444785 24623516 ~ 24711368 (-) True G104473
XR_004578330.1 other downstream 1545705 23590945 ~ 23610448 (-) True mmp23bb
XR_004578321.1 other downstream 2849384 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 4143053 20995341 ~ 21013100 (-) False sertad3
XR_003402763.2 other upstream 203218 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 203218 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other upstream 203218 25385325 ~ 25485121 (-) False si:cabz01090165.1
TU124615 other upstream 1057223 26239330 ~ 26241005 (-) True G105376
TU124747 other upstream 1386978 26569085 ~ 26608329 (-) False LOC113526510

Expression Profile