RNA id: XM_026913573.2


Basic Information

Item Value
RNA id XM_026913573.2
length 2962
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC113526499
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30452707 ~ 30464074 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctgtctgtctgctttgagtgtgtgtgtgtgtgtctgagagagagagagagagagagagagagagagagaacacagccTGGGGTGtagagaaaagcagaaaatacaCAGAAGGACGGGAGAACTTTTACACGCCTGACGTGGACTTGATGTGGACGAAAGcggagtgtgtgaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaagcatgaATCCGTGAGGAGGTCCGAGACGATTGTTGCGAGTGTgtgttgaagagagagagagggagagagaaggagagagagagagaggaagagaagtcGTCTCATGGAGAGGCTCCTCTCTGGCTATGGGGGGATGTCAGAGTTTTATGGGCTCTGGGGACGAGGCCTCACACACTCTGACTGTGGAGAACCACGAAGACATCAACACTCTGAAACTgaAGAATAATAATGTTCAAAAGGCTCCGTTGCTGCAAGAGAAACCGTACCTGCAGGATCACTTCCTGAGAGACCGCATTTCAGACGTCGACCTGCTCACACTGTCCGCTCTGCCACATGGGCTGGACCAGCACGAGTGGATGGCCTTCAACaCCATCTCTTTCTTTAAGAATATTAATCTCATCTCGAGCGCTTTGTCCGAATTCTGCACCTCGACAAGCTGCCCGACAGCTAAAGGGCCAGGAAACAAggtgtatgaatggatggatgaacatgGGAAGAAGTTGAAGTGTTCAGCTCCTCTCTATATAGATTACGCCATGTCCTACATCCAGGAACTGCTCACAGACGAAAACGTCTTTCCCACCAgggcaggTGTAAAATTCCCAAACGGATTCATGTTCCTGGTCCAGAAGGtgttcctgctgctgttccGAACTCTGACCCACCTGTACAGCGCTCACTACAGAGACGCCGTGGCTGCGGACATCCACCCGCACCTCAACACcctcctcacacacttcatcaccTTCAGCCACACCTTCAGGCTGCTGGAGGCTTCGGAGACGGCGCCGCTTGATGACCTCGTCAACGctctcacacactaacacacacacacacacacacacacacacacatacactaacacacacatacactaacacacacacacacacagagagagagagagagagagagagagagcgagagagtgagagtcTGTGCGTACTGTTGACTGAATCAGAAGTTTCCCTGTAGTCGAGTgagtgttaaacacacacattaacacacacacacacacacacacacacacacacacacacactgagggccactaatgaaggaaaaaacaagACTGAGTGGCGTGGCTGTGTGTGCAGATCAGGCTCCTTTCTTTACTCTAGAgcatacagtaaatattaaaggactgcaaacaacacacacacacacacacccctactcTCGTGGACTATAATATCTGCTTGCATACGATATCTGGTCTGACTGGTTTAAAAAGGAATAAGATCcgtttacttacacacacacacacacacacacacacacacacacacacacacacactacctttATCCTTTACAGTGCATGAAGATATTTATAACATATAAGACCTCGCGTTTGTTTTTTCTGCGTTGATGTACTATATAAATTGTACCAaaggctttttctttctttttttttatttaatttgcatcTAGTGAATTaggaaatatgtaaatattccTACAGTTCCTAGCTCTACAGTTTACCGTTTAATACAGGAACAAATGGTAGAAATGACAATTCTGGTCAATAATTTTCCAGATTTTTGGATGCATAGCGTCTGTAAGATGTCTCCTCTTAAACtaaagcaaaagaaatgaacaaacaaacaaacaaaactcaacagaattatgtttattttactgtttttggtttttgctcttttttggAAAAGGACTTAAAGGCTtaaagctccgcccacttcacatCCGtgacatgacacacacacacacacattctcagaaTATGGTGATAAAGCAGTTATAGTTTAAAATCTTTCAAGAACTCCCAAGTAGCAGATATTACTGTATAATTTTAAACTTTCCTAAGCAATAAAAATAGTTTGAGTCTTAattattgtgtaaatattttaaaaaattctctcAAACTTCCAAGTACTGGAACATAGCTTGCCTTGTGAGCCAGTTGTGTTGCTTTATAAGCTTTTGcagacttttaaaaatatatattccttATTCTTTTTAATGTCAGACTGAACATAAGTATGAGATCTATCAAATACATAACAGCagaataaaatcaattttaaaaagaactatTGTCCCTGAATTTCATGTCATTGGAGTTAGCTGGTTAAAAGCTAATATTttgaaagcacaaaaaaaaaatgttgataagTGCTTCCAGGGTCAAAGTTCAGAAGACTGAGCAGCCATTTCAACCAGCACCAGTAGCGTTATAAGTTAAACTTCTAACTAAATTCTATTTTACTTGTGAAATCCTTTTTCTTTTGGATGATTTAGGTGTCATTGGAGTTACCCTTTTCAGACTTCctgtaaaataatgtttacagaaaaataatagtatcataatcataataatagtattataataataatagtataatttATTGATGCTGGTGTGATTAGTGACGTGTGCTTTGACTCCGTCTCTCTCAGAAAACACGTCTTTAATGAAAAGTCTGAATTTTCTGATCAGAAATTCACCATATTCTGAGAATTTAGTATGCGTTATTATGATATACTCattaatttcctttataaacaaCACTAACTAGAATGAAACACATTCTAGCCACATTCATGACactttattttacctttttaacctaattataaaaaaaaaataataattacagaggaatttctccaaaatttatttgattattctTGGATTAACATTCAATTTTAGTgtgaaaaaatatgtataaattatatttttataacaccTCGTGGTGTTTTCTtggttaaacaataaagaaatgattttccaaGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127127 lncRNA downstream 29369 30421252 ~ 30423338 (-) True G107574
TU127088 lncRNA downstream 45743 30368887 ~ 30406964 (-) True G107536
TU127084 lncRNA downstream 61249 30363627 ~ 30391458 (-) True G107532
TU127085 lncRNA downstream 83519 30368338 ~ 30369188 (-) True G107533
TU127060 lncRNA downstream 140861 30309847 ~ 30311846 (-) True G107510
XR_003402799.2 lncRNA upstream 250044 30714118 ~ 30715453 (-) True LOC113526678
TU127459 lncRNA upstream 321519 30785593 ~ 30849684 (-) False selenot1b
TU127460 lncRNA upstream 346973 30811047 ~ 30826087 (-) True G107800
TU127464 lncRNA upstream 355132 30819206 ~ 30820422 (-) False G107803
TU127466 lncRNA upstream 356635 30820709 ~ 30822357 (-) True G107804
XM_026913453.2 mRNA downstream 8388 30437029 ~ 30444319 (-) True adm2b
XM_034304953.1 mRNA downstream 19652 30427180 ~ 30433055 (-) True miox
XM_026914034.2 mRNA downstream 93177 30355521 ~ 30359530 (-) True tnni1c
XM_026914460.2 mRNA downstream 196623 30137011 ~ 30256084 (-) False tspan4a
XM_026914459.2 mRNA downstream 230349 30137011 ~ 30222358 (-) True tspan4a
XM_034305125.1 mRNA upstream 5886 30469960 ~ 30489913 (-) False ppp6r2b
XM_034305127.1 mRNA upstream 5886 30469960 ~ 30489913 (-) True ppp6r2b
XM_034305126.1 mRNA upstream 5886 30469960 ~ 30489735 (-) False ppp6r2b
XM_034304989.1 mRNA upstream 35791 30499865 ~ 30514364 (-) True LOC117597520
XM_034304990.1 mRNA upstream 52279 30516353 ~ 30550285 (-) True kcp
TU127077 other downstream 107831 30343531 ~ 30344876 (-) True G107525
TU126682 other downstream 738715 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3295567 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 3844378 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 4211702 26239330 ~ 26241005 (-) True G105376
TU127397 other upstream 265884 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 352505 30816579 ~ 30819614 (-) True G107803

Expression Profile