RNA id: XM_026913638.2


Basic Information

Item Value
RNA id XM_026913638.2
length 4748
RNA type mRNA
GC content 0.54
exon number 23
gene id kiaa1549lb
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29599585 ~ 29657809 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gctcctgaATTCAGTGAGCGCCGGAGGAGAGCGGCAGGCTGCGGGAGCGCGCGACGCTTGGGTTGGGTTGGGTAGGGTTGGGTGACTCGCGGTTCCGGTTCGGTTCGGTTCGGACAGATGTCTCAGTCACGGAAACGGAAATGGCTTCCGGATCCAGCTCGAGGACTGCGCGAGGAGGAGagcaagaagaagaggaagagttCGTGCACGGAGCGCGCGACTGTGCGCGGAGATTCCGCCGCGCCTGGCGCTCCTCCGGGGCGCGTGTAGTGGGCGCGGGAGCGGGCGCGTGCCTGCGGCGGCGGAGCGGCAGAGGCGCGCGCGTGGGAGGCATGCTCGCGGGGTTAGTGCTGCTGCTGGTGCACGGTGCGCTCGCCAACCCCGATGAAACAAATTACGAGGCGTCTGGATCATTGGCATCAGCTCTGGACCAAGCAACCCTGTCCACCTCTTCTCTTCGGCCATCTGGTTTGCATATGACTGATGAGGGTCCCATCTCGGTCATCCATTCTGATCCTACAAGTCGACAAAGGGACATGAGAGAGAAGTCTCTATCAGCCAGAACAGCTGTGAAACCACAGATCACTCTTCATTCAGGCTCCACTCTGGAGAGTCCTGTTAAGGGCACCGACCAACCTAACCATTCACCTGCAGAAGGTTCTATTCAGAGAGCAGAGCCATCTTTTATGATCCCGTCCTCTGCTTTGGTGCACATTAGAAACCAGTCTTCTACTTCAGAGAAGTCTACGCTGGACCAGTGGATGTCCGGGCTTCCGTCCTCTGTCCTTACATCTCGAGAGACGAGGCTTCATGCAATAGGAAATGACTCTGGTTTACCTCCATTCCAAATGATAAGTCCTATATTACccaacaaaaatgtaaatgtctcaGTCCATTCAGAACCACTTACCCAGCAACTACCAACTAGCAATTTCTCTCAACTCACCACCACAACAGCTTCCACAACAAGTACCACAACCACACAACCGACCAGCACAACTCAGTTAACCAGCACCACAGGGACTACAACCACCACCACTACGGCAAAGCCTCCCGGAACTATAGCACCTACCGTGTCCCCTAAATGGCCCACCACCACCCAGCATGTCAGGACCAGTCCACCCagaaccaccaccaccaccactcaAAGTTCTCCACTCAGCTGCAACATAACTGACAGGATGTGGGTTAAAACAGTTCTGTCCATCCACATCCGGAGGAACCGGCTGGACAATATTTTGAAACAGAACCTTCCGAAAGGTCTGACTTTGGCACTGGCGAAGGCTCTGAATGACAGCGGTGCCCGTGCACAGATTGAAAGTCTGTCCACGGTGCACAACGTGACCGTGGGATATTACGTAACTCGTGGCGACATGGTCTACACCACGTCCGTCGTAGTGGAGGCTCTGAGCTCCTACGGCATGGACAGGCTGATGGCGGATATCCGGCAGTTTGTGCCCATGGTGCAGGCGGTGCCAATCCCAGCAGCCCCCTGGAGGCCTACTCCTGCTATTTCACTCATGCTGAAGACAGTTTTGAGATTTGTAGGACCGGGAGATGATCTGAGGTCCTGCAGGTTTGCTCAGCTGATGGAGGAGAGACTGGAGAACGCGTTTGCCGAGGCTGAGGCCAAAGTGCTGCTGAACGCTTACAGCACACTCAGCGTGCAGATTCTGAGTGTGTCTCAGTCGGCCGGTTCTCCTGCAGTATCTCTGATATACGTGGTGCATAACAGAACCGAGACCCTGAACGGCACCGTGGCCAGTAACCTGCTGAGCCGCCTGACTGCTGAGCTTGTGGGCTACTTCCTGTTTTACCCTCCGCTCATCACTGCAGAGcCTTTGGAGTACCACAACCTCAACACCTCAGCAGCTACCAAGGATTTCTGGGTAATCACAGTGATTCAGGACGTGGAGAACTCGTCTCTGGAGGGTCAGTACCAGAGCTTCGCCAGTCTGATGGAGCAGCGCTTGGCAGAGCTCTTTGTGGTAGCACATCAGCAGGGTGCCCGCTTTAAACGTGCCACTACGGTGGGCAGTTACACTGTTCAGATGGTTGGCATGAGGCGAGTGGTAGGTCCAAAAAACCCGGCTGAACTCACCTACTATGTGCAGTTGAATGGAATGCCACTCCCTGGTACAACTGCAGCGAAAATCCTGAACACTGTGGACTCTCAGACAATGGCTCTGACACTGGGATATTTTGTCCAGCTCCAAGCTGAAGCTGTGGTGAAGGGCCCTTCCAACAATCTCTGGATCATCGCCTCTGTTTTGGCTCCTATCGGCATtgtcaccatcatcatcatcatcatcaccgcTGTTCTTTGTCACAAAAACAAGAGCGACTTTAAAACCGACGGAATTGGCAACCTGAATCCACGGGTTAAGACGACTTACCGGAGAGACATGAGTTATTATCACCAGCCTGTTCAGGGTTTCGACTATGCGAAGCAGCATTTGGGTCAGCTGGGCGCCGACGAGGACAGCGCACCCCTTCCTCAGGCTCCGCTGCCGATCCGGGACGCCTCTCTCTCCATGGAAAAGGTCATCCACCCAGACGGCACCAACTCCAAAAAGACCCTCAGTGGCGAAATCCGGAAAAGCAGGTTGCCGAGCGAGGACGGTTCTGCGGTCAGCGTCGAATCGGCGAGGCCGGTCTCAGTACGAGGCTCCACGGTGAAGAAAATCACGACACAGCAAAGTCTCGTGAAGGAGGAAAGTAAGAAGCGGACCGATCCGTATGACACCTCATCAGGATCTCTGCAGCTCATCTCTGTAAAACCGATAGCAGCACCGCCGGCGTACTCGCAGCCAGCTTCCTCTGACCGCAGTCAAGATTCGGCTGTCCTGAATGGCGAGgTGAATTTAGCTCTGAAGCAGAAGTCTGACATCGAGCATTACAGGAACAAGCTAAGGCTGAAAGCCAAGAGGAAAGGCTACTACGACTTCCCATCAGCCGAGGGCAGCTCCAAGACTACGAGACACGGAAGCGACAAAGCCGAACACATCCCAGCTACACGACCGTCCAGCAGAACGCCAGAGTACGACGACGACCGGAGCTCCACGTATGTCAAATCACGCAGGAGACTCTCTGAGGTAAAATATCCAGAGTATCGGAGCAGACAATCTTTAAACAGCCCGAGTCCCGGGGGAACCGAGATGGACCTTCTGGTGATGAGAGAACGGCCACGGAAAGGCATCCGCAACAGCGGCTACGACACGGAGCCTGAAATCATTGAGGAGACCAACGTGGATGGCTTAGCTGCTCGCCGTCACTATGGCTATGGGCggcaggtcaaaggtcactcaGAGACATCCACACTGAGCTCACAGCCCTCTATAGATGAAGTGCGTCAGCAGATGCATCTGCTGTTAGAGGAAGCTTTCAGCCTGGCTTCTGCAGGTCATACCTCATCCAGCAGAAGGAACCACTACCACCAGCAGCACCAGGCGATTAGCCCTTACAGCCCCGGGCCTTCTATTCCCTACTCTGAGGGGCCAACTAGCGCACCTGACACCATGAGCCATGCCCAAGGTGGACTGCAGTGGGTACCAGCCTATGGCCATGACCTCTATCAGTGCAGCCTGAGCAAACCGaccttcaggttcacccaGCTGCCGGAGATGGTCACGgactctcctcctcctcccgtTCCTCCCAGAACAGGCCCAGCGCCCAGGAGCTCACTGCGGAGGTCTTCCTCAGATCTCGGCCCAAAAGCTCACAGCTCTGAATCATCTGTGCCAGACGTGCCGAGTCAGCAGGACAGCAACACATACGTGCCAATGAGCAGAGGGTCACTCCCACCTGTCACTACTGAGCCTGTACTCAaccactcagGAAACCCGATGACTGCTGTGTACGCCATCCCAGCCAGCAGGCCAGGCTACCCCGGCTACTTCATCTCCACTCCTCCTTCGTCCTATCACAGCCCCTCGTGGATGTCGTATCCCCCAGAGCCCGAGGACGTGTCTTCACCATGGACTGATTCTGTTCCGTTGCCAGGTTACGCAGAAGCTTTTCCGAACCCACGTTACCCTCGAGGAAGTCCTTTCCAGTGGAACCCCAGCCAGGCGGTGTCTCCTCCTCAGGGGGAACCCGATCAGCCGTTCTCTCTGTCCACCGAACCCGTGGACTTGATCACTCCCATCACGCTCTCCACCTCGGCTCTGGTCCAGGCCATCCGTGATGAGGTCGCCAAGCTGGCCAAAAAGCAAGCGGACATGTTTGAGTTCCAGGTCTAGAGCTCCCCCTGCAGAACTGGAGCACAAACTGCACTCTCGAGCTCTGGAGCTCTCTTCTTGCTGACTTTTGGTTAAAGCCAGGCTCCTGAATTTTCCTGGAAACTTCCATTCCTTAAAAGAACTTAAaggtgtatgtgttttatgaaAAGGCTGCCTGTTTATACAGCTTTGTCTCCTTTCCTACACCGGCATTATATTTTAGCATCAAGTAAAGCTTTTGGATAAAAGACAATATCAAATCCATCGCTACTTTCATATCTAACTCTAATTCCAAACACACAggaatgatgaatgatgatggttatgaaaaaaaaaagtttttttgtttccGCTATGCACAACTCAGCCAATCCATAAGTGCATACTTTTGTGATACATGTAGGGAATAAAATACTGGCATGGTGTAATGAAGCGGAGTTTCTTTTgctaccctgaagttgattagttttctataacagcatgtgagGGGCAtgatggctcagtggttagcatgtttggcTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402809.2 lncRNA downstream 319402 29273077 ~ 29280183 (-) True LOC113526826
TU126422 lncRNA downstream 396741 29202007 ~ 29202844 (-) True G106951
TU126243 lncRNA downstream 794155 28805033 ~ 28805430 (-) True G106772
TU126180 lncRNA downstream 820567 28764739 ~ 28779018 (-) True G106713
TU126166 lncRNA downstream 837848 28761518 ~ 28761737 (-) True G106705
TU126679 lncRNA upstream 1832 29659641 ~ 29677509 (-) False hipk3b
TU126704 lncRNA upstream 22454 29680263 ~ 29707900 (-) True G107193
TU126702 lncRNA upstream 66305 29724114 ~ 29724377 (-) True G107191
TU126723 lncRNA upstream 107567 29765376 ~ 29844857 (-) True G107210
TU126731 lncRNA upstream 264933 29922742 ~ 29923193 (-) True G107217
XM_026914401.2 mRNA downstream 120153 29398604 ~ 29479432 (-) True spon1a
XM_026913423.2 mRNA downstream 230034 29345335 ~ 29369551 (-) True syt9a
XM_026913926.2 mRNA downstream 268634 29294888 ~ 29330951 (-) False ppfibp2a
XM_026913927.2 mRNA downstream 268635 29294889 ~ 29330950 (-) False ppfibp2a
XM_026913923.2 mRNA downstream 268635 29294889 ~ 29330950 (-) False ppfibp2a
XM_034305475.1 mRNA upstream 11098 29668907 ~ 29714001 (-) True hipk3b
XM_026913661.2 mRNA upstream 69281 29727090 ~ 29766745 (-) False lrch3
XM_034305169.1 mRNA upstream 70275 29728084 ~ 29766747 (-) False lrch3
XM_026913659.2 mRNA upstream 70276 29728085 ~ 29766747 (-) True lrch3
XM_026913660.2 mRNA upstream 70277 29728086 ~ 29766746 (-) False lrch3
TU125182 other downstream 2442445 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 2991256 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 3358580 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 4050657 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 44343 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 685722 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 1072149 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 1158770 30816579 ~ 30819614 (-) True G107803

Expression Profile