RNA id: XM_026913659.2


Basic Information

Item Value
RNA id XM_026913659.2
length 6683
RNA type mRNA
GC content 0.46
exon number 21
gene id lrch3
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29727090 ~ 29766747 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGGAAGGAAATAAGGCAGGGACGGGGAGAATCAGTGGGAGTTCGCTGTGTAATGGCGGCCTCGGTGTTGCTCTCTGCGGAAAGCACCGTGCCTGGATTCGCTGTCGGTGGGAGCGCCGGTGCGTCAGCGACCACCGGGAACGGATTAACCGTGCCAGGACCCGCGAGCTGGAACCGATCCCTGGACCGGGCGTTCGAGGAAGCCGCGGCCACCGGCTGCCTGAACCTGAGCGGCAGGAAGCTGAAGGAGTTCCCGAGGAGCTCCGCTAATCACGACCTCACCGACACGACCCGGGCCGACCTGTCGCGTAACAGACTGCCCGAGCTGCCGGTGGAGGTGTGTATGTTCGTGTCGTTGGAGAATCTGAACCTGTACCAGAACTGCCTGCGCTCTCTACCTGAGAGTCTGATCAACCTGCAGGCCCTCACCTACCTGAacatcagTCGTAACCAGGTGTCCACTCTGCCTGCTCACCTGTGCAGTCTGCCGCTCAAGGTGCTCATCGCCTGCAACAACAAGCTCGTGTCCCTGCCTGAAGAGCTCGGCCAGCTCCGACAGCTCACTGAACTGGATGTGAGCTGTAATGAGACTCAGACGTTACCTGCGCAGGTCGGCCAACTCGAAGCTCTGCGAGACCTGAACATTCGCCGAAACCACCTGGTTCGCCTGCCTCCTGAACTGGCGGAGCTTCCTCTGGTGCGCTTGGATTTCTCCTGTAACAAGGTGACGTCCATCCCGGTGTGTTACCGCAACCTCCGACACCTGCAGAGCATCGTGCTGGACAACAACCCGCTCCAGAGCCCACCTGcgcagaTCTGCATCAAGGGGAAGATCCACATATTTAAGTATTTGAACGTAGAGGCGTGTAAAATAGCTCCAGATCTCTCGGATTACGACAGGAGGCCACTGGGCTTTGGGTCCTGtgtggagGAGCTTTATCCTGGCCGGCCGTACGGAGCTCTGGACTCTGGGTTTAACAGCGTGGACAGTGGAGACAAGCGCTGGTCAGGCAATGAACCCTCGGACGAGCTGTCAGACCTGCCGTTACGAGTAGCGGAGTTAACCAGAGAGCAGAGACATCGgcgagagcgagagcgagacgAGCACAAGACGGGATCGCTGTTGGCTAACGGAATACTGGAGGCAGAGCTCGACCAGATCGACTTTATTGACAGCTGCACAggggaggaagaagaggaagatggGCGGAGCCGAGGACGAGAACCAGTCAGCCTCAGCTCTCAGTTTATGGCCTACATCGAGAGACGAATCACccgagaggGCTCACCGGTGAAAGCATGTTCCTCCAGAGATGCAAGAAATGACGATTCAAGACGCTACGGCTCTTTACACAaccgTGTATCGGATACAGCGGGCACGTTGTCATCTCCGTCTCATAGCCAGcgGGCGGGGTCAGGCGCCGGTGTGGAACGCATGCGGCGAGAGGCTCAGCTCGCTGCTCAGAGGTACGAAGAGGAGAGGCAGCGAGCGCGAGGTGTTCAGAGAGAACCCGTGAGGAGTTACGTCAAGCAGAAGTCAGCTCAGAGTCCGCCTAAGCTCAGTCCCACAGACAGCGAGAACCTGTACCCTTCCAGACGCTCTACTCATACAGATGACTCCGCCCTCTTTATGAGTGAGTCCGAGCCCTTAATGGCGTTTGAAATAGACATAAACACCAACACTATAAAGAAGAGGCCGAGTCCTCAGAAGCAGcaagGAGAAGATCGCGCCTCGCTGTCCCCGACTGCGCTCCAGTCGCCCTCTTACCCCGGCCCCGCTGCGCCGACCTCCTGCCGCGGAGCCGCGTCGCGCCCCGAGAGCTTCCTGTACCGCCTCGGTCAGCGAGAGGAGAAGAAACGAGgagacgCGAGAGCTGGGAGGTCCGAGCCGGATCACGCGACTCCTACACCATCACCAGCTCCAGGACTCACAGGAGAAGAAGCTGAACTGGTGGAACAGCTCAGAAAGAACATCGAGTCTCGGCTGAAAGTTTCGTTGCCTAGCGACCTGGGGGCGGCGCTGACGGACGGGGTGGTGCTGTGCCATCTGGCCAATCACGTGCGGCCTCGCTCAGTACCCAGCATTCACGTGCCCTCGCCTGCGGTGcCCAAACTGACTATGGCTAAATGTCGACGGAACGTGGAGAACTTCCTGGAGGCGTGTCGTAAAATCGGCGTCCCTCAGGGAAGCCTGTGTTCAGTTGGCGAGGTGTTGGAGGGCAAAGCACTGTGTTTATACAGACTGATCGACGCTTTGCTCTCGCTAGCGCCCCCTATGCGTCCGTCGCCTCCGTCCCAGCTGGCCGGCTTCGCGCTGTTCTACCTGTCCTTCATGTCTCTGTTATGTGCTCTCTACTGCCACCTGGTGCCGTGTTTTTAATCAGCACTCGTACACTTACAGTGTGTCTTCTGCACTGAAACTAGAACAAAAGCGTTTAACGTTCGCACTAATAAACCagacaatcatcatcatcatcatcttcctacGAAATCCCTAGAGGTTTACTCTTAAATTCGGAGGATGATCTTCAGCATAATTAACTAATGATCGAATACCACATGGTCAGATTGTAAAGCACAACAGCTCATTGGATGATGGATTAATAACAGACAGCACGAGGAAACGTTTTCAATTTTTGTCTGAGTCCTCTCTCAagaactgttttttgtttttattgtttggtTTTTACCATCGTGTTAGTTAATTTATTCCTTCAAACaagattgaatttttttcttcactgatAACTAGCTTTGATACCGAAACACACACCAGGTATCCGTCCAGTTCCGTGCTCATTTACTCGTACTCgatttggaaaaaaatcactCGCTCAGAagtttagttcctacctgcagttagttcccatttactgacTGATGGAAGAAAACTTATAACTGTGGTTTCGTCTTACCCTGCTGTATACGAACTCTCATGAAATGTGTgtagagacattacaaagaaaaataaaaaccaagcttggaaggaagtagcagagatcttTGGTTCCTTCGATGAATGTACGTAGCTTGTGCAGTTAGCTCGCTTTGGTCGTTTAATCTGAGAACGTCGCTGTGTAAATGAAACAAGCAATTTTTACACCGATTagtgaattatttaatttctatttaacctgttagctttagaagctttATATAGCTACTAGTATTTCTCATgacaagccacgcccacaagagacaaacttcGAGCAGCttgtcagtggttagtgtgaACGTAGGAAATGGGGTTCAAACTGAAGCtccatttaaataatgtactCGTGAATAATACGAATAGACTGCGTacaattttgtgtttgtttatgattGTTTTTGATAGctgatggaataaaaaaaaaataaaaacagtttttgtttgtAGACTCAGACATTTGGATACTATTTGTATCAGGAATTTTCCCAAATGCTGACTCGGAAAACATCTCACTGCTTAAAGGAAGTAGCCATACGTTTATTAAGCCGATAAGTGCCCCTGTTCAAATCCAAACATTTTACAATCTCTCCTTCCAAAGAGTGGATTTGTTGAACTCTTTACTGAGAAACGCTGCTGTTATTTCCGAGCTTCTTATCGGCTGCTTTTAGTGGTGCGCATTTCTAAGCATACAGTAACGATTGTTTTTAATCTGCAATAATGTATTCTGGGTTTCAGGGTTGAGAAATTCAAGCCTTTTTGTTCTGTTGATAAAAAGGACTGTTGAAATAGCGTATCTGTAACTTTGTAAGTTAAATAGATAGCTAGAACATAGCTTTGGAAATGAATGTtagggtttttgtgtgtgtgagatgatctAAGACCAGTatgagaggtttgatagtttaAACCAGTGTTTTTCAAATAGAAGGTATTTCCAGATACTACTGAGCAGAAAAGACTTTTAAGGGGAAAAGGGTACTaattaatactgtttttttcccctagatattattttaatgtaataattagaACTACGAATTCCATTCCAAAGGTCTAGTAAATATATGACGAGCGTGCCGCTCCACTGGCATTGCACCTGACCTTTAACCCTTATCTTGTTGGTGGTGAGCCCACAAGATGGCTCCACATTGCCGTTTGGGCTGAGATTGACTGCGCAGTCACCAGTCACTCACCTGCGGACACTACCTCCAGGCCTGGCTCCACCCTTTATCATGGTGATGAGCCTACAAGATGGGGTCTCGTTGACATTTCGGGCTGAGCTAGACCCGCTCGCCTGCAGATACTACCCTCAGGTCTCGCTCCACCCTTCACCTTGCAGATGGTTGAGCCCACATGATGGCTCCATGACTCCATTTTGGGTTGAGTTCGACCCGATTACAAGATTGGCCCAGTCACCAGAAGCTGACCTGCAGACTCTACCCCCAGGCCTGGCTCCACCCTTCATCTTGCAGGTAGTGAGCCAACAAGATGGTCCATGTAATCATTTCAGGCTGAGCTCGCCTGGGTTACGTGAGTGACCCGGTCTCCAGGTCTGTGAACACCACCCCCAGGTTTTGCTCCAATGGTGGGTTCCTTTAAACCTTATTCCATGCAGGGTACATCTAGTCTGTTTTGTAGCTTTTATAGCGGTCATCACTCCTTGCCTGATTTCTCCTCTTAGACCTGTTCAGCAAGGGCGGCCCTACTGGGAGCATTAAGCTCCCGGTGACGTAGCCCTGAGGTTCACTGAAGGACACCCCTCTAACTGTTGCAGCATTACAGTCACTTCACCGATCCGTTGCGGTGAAGCAGGAACTCGGTTTGTAGATGAAGCGCACTGTTTATCGGTCATTCTACGTGTTTATAAGTTCTCAAGTACAGGTTgtggaaatgaggttcctctaCATGCTCTCTGTGATACGGTGAGTAGTTTGATGACCTGGAAGAGCCTCTGAGTAGTGTTGCTGCTTCTTGCTTTGATTCCTTGCTTACAAGGATGCCTCCTGGTTGGAGATGGTTCAGGCACGTAGCAATGGACTGAGACTCCGGGGCAGACCCAGGACCCACTGGAGATGGTATGTAGGGATAGAGAAAGTCTGGTCTAAACTTCTCAGCTGGTTTCCATCATGACTTCCACcatctatttatatataatatatattgcaATCTGCAGTGTATGTAGCTGTGCAGTGAATGCTCTTCATACAGGAACTATGGTCTTTCCCTTACAGATATCTTCCTAGTGTTTCTAGTGCAGTAAAGGGATACTTGACTTAAATGATCATTGAAAGGGGTCTACAGCCAAAAGAAAAGTTTGGAAACCACTGGTTTAAACACCTTCAgtcagtatttgtgtgtgtgggttataCACGCTGATGCCTAATGTTCTGATAATCCTTTAAGTTTATGACTCTTCCAAAACTTTTACAATAAAATTGAATCCTTGTCCTTCACTGTTTCTGGCTCTTTTGCTGCTACTTACTCCAGTGTTATTCATCCTAATCTCTATCCACCAATTCTGACGACAATTTAGTCACTTCAACCTGGTCACTTTTAAACTCCGTCAagcaataaacatttaaaatacacaaatttaaaGCACAGATTCAAACCTGCAGCTATTAGATGTGAGAGAAAGTCGTACCAGATCTAGAAATCTTCTCCTTTTGTTGTAGCGTTCAGGAGTGTTTTAGGGATGTGGATTTGTAAAGAACTCTAAAAAATGAGAGTTGTGTTTGTGGTAATTTTGGCATAAAcgcaatttttttcttcttaaaaaagTCGTACCTGTCGTGATGTCACGTTATAAACAAAGTGACTCCCACAGTTAACAGTTTTTAGGAGTATGAGGTCAGGATTTAACTTTatccttctatctatctatctattggaCATTCCTTTAGTATTAATACAGACTTACGAACCTTCCGGGATTTTGCGTAGGATCTCCGCATTTTATCGTTAAAGTACGATACTCCAACATATGCCAAAAGCGCTAAATAAAAACCTCAAACGAAATAATTCGAATCATATGAATCCAGTTGCGTAGGTGATTTTTACTAATCGAAATTAATTGATCCCCCtcgaagccccgcccccttctgAGATTTCACGTTAGTAACGTTTCAGTCTCGATTCATTTAGATTTTTATGCGAGAAAAAAAACGCAATAACGTGGCGTCTTTGCTTTCTGTCATGGTAAATTGAGTATGTTTTGAGTttattaatgagaaataaaattgatcaatatactgtatgttctttTGGTAGTACGTTCCATaaaattattagtttatttatttatatttattagcgaTGTGACTGAAATAATCTCGGGAGGAAAACAATCGAAAACAGCATTTCTGCTTTTCGTGTTTAGGTTTATTGACGGAGTTTAATAGCTGCTTTTAGACTTCGGTTCTAGTTGAGTTCGGAGTGAACGCGGAAATTCATATTTGTGatgaaatatcacacacacacacacacacacacacacacacacacacacacacacactgcagatacAGTGGAGAGAGGTTAGGTTTAAAAACACTGGAGAGTTCTCTCTTTTCTGATTGGCCTCTCTTCTATTCCGCTTTTACTCTTCTGCGTTTTCCCCACAgtcatggttttgttttttttttttttcccctcattcatCTCTCACTCCATTATTAattttacacagttttatttttaagtttgacatgttttctttttttttatttaattatatcattgtttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126702 lncRNA downstream 3708 29724114 ~ 29724377 (-) True G107191
TU126704 lncRNA downstream 20185 29680263 ~ 29707900 (-) True G107193
TU126679 lncRNA downstream 50576 29659641 ~ 29677509 (-) False hipk3b
TU126683 lncRNA downstream 66386 29620799 ~ 29661699 (-) False hipk3b
XR_003402809.2 lncRNA downstream 447902 29273077 ~ 29280183 (-) True LOC113526826
TU126731 lncRNA upstream 155995 29922742 ~ 29923193 (-) True G107217
TU127060 lncRNA upstream 543100 30309847 ~ 30311846 (-) True G107510
TU127084 lncRNA upstream 596880 30363627 ~ 30391458 (-) True G107532
TU127085 lncRNA upstream 601591 30368338 ~ 30369188 (-) True G107533
TU127088 lncRNA upstream 602140 30368887 ~ 30406964 (-) True G107536
XM_034305475.1 mRNA downstream 14084 29668907 ~ 29714001 (-) True hipk3b
XM_026913638.2 mRNA downstream 70276 29599585 ~ 29657809 (-) True kiaa1549lb
XM_026914401.2 mRNA downstream 248653 29398604 ~ 29479432 (-) True spon1a
XM_026913423.2 mRNA downstream 358534 29345335 ~ 29369551 (-) True syt9a
XM_026913923.2 mRNA downstream 397135 29294889 ~ 29330950 (-) False ppfibp2a
XM_026913330.2 mRNA upstream 204720 29971467 ~ 30064366 (-) True luzp2
XM_026914460.2 mRNA upstream 370264 30137011 ~ 30256084 (-) False tspan4a
XM_026914459.2 mRNA upstream 370264 30137011 ~ 30222358 (-) True tspan4a
XM_026914034.2 mRNA upstream 588774 30355521 ~ 30359530 (-) True tnni1c
XM_034304953.1 mRNA upstream 660433 30427180 ~ 30433055 (-) True miox
TU126682 other downstream 14093 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 2570945 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 3119756 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 3487080 26239330 ~ 26241005 (-) True G105376
XR_003402764.2 other downstream 4242964 25385325 ~ 25485121 (-) False si:cabz01090165.1
TU127077 other upstream 576784 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 963211 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 1049832 30816579 ~ 30819614 (-) True G107803