RNA id: XM_034305278.1


Basic Information

Item Value
RNA id XM_034305278.1
length 2426
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC113526534
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25304736 ~ 25319693 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCAGAATCACTGTGTAACTGTAACTGAGGGAGCTGAGACAGACACTCccgcgcgtgcacacacacacacacatacacacacacacacacacacacacagtctgcacAACAAAAGAAGATGCGTACGAACACTGCTGCTCTTCGCAGTGGCATCTGTCAAGCGGTGGGAACACAAGCGTAAGGAGCTGAGTAGCTGActactgggtcagagcatcttcaaaacGGCAGGCGTAGCTTCCTTTTCAAAAGTGACAAATACAGAGAAGGCATTTTGTCGATATGGTCGGGAACCGTTATAAGAAAAAGAAGCCAAGACATGTGATCTTTGCATGCTGCGCTGCTGTATAACAGGGCAGAAGAAGCCTCCTCAAAGCACTGGACTTTGTCAAGGACATTCTTCATCCTTCTCATTGTTATTTTGATTATCTACATTATTTACATCTATATTGCACAAAAAGATGTTTATAAATACAAGCCTATTTACCCTCACTGGAAAAAGAAGCAGCCAGCCTTTGCATGTGGTGTAACGGTGCAAAATGATCCGATCATTAAAGTCAACAATCTTAAAACATATATGATCGGCTCCTACATAGAGCACCGTAAGGAGGTGAAAATGATACGGACAATCACTATAATGTTTCGTAGTGAAAACGCAGAGTATCACTGCCTGTTGTGCTGCAACGGACAGAACGTGTCTGTACCCGCTACACGCGACATTCACTCTGACCACTTTGGGTTTGAATACGGCACGGCTGATATCACCTGCAAAGTACCGGAAACGTGTACAAAACCGACACATGTGGCGATCACTTCCCGATCACCTAAAGAGGATGGATCCTTGCAGGACATACGCGCATCCCAACCTGTTAGGAAtcaggaggaaaagaaagactTTCCTTACGATTTTACAGTTTGCATTTCTGTCATGTATGATTATGACAATGTGCTGGAGCTTGTGCAGGCCATGGAGATGTTCAAGATACTTGGTGTCCAGAAGGTAGCTATTTACAAAACCAGCTGCACTCCTGATATACAGAAGGTCCTGGATTACTACGTCAGGCAGAACTTTGTGGAGATCATCCCCTGGAACCTATCACCACACAACATCACTGTGTCCAGGGGCTGGAAGAAGTCGGATTCACCAGGAGAGCTGCATTACTTCGGCCAAATTCCGGCACTCAATGATTGTGTGTATCGTTACATGTACCAGAGTCACTATGTAGTTCTGCAAGACTTGGATGAACTTATTCTACCTATGAAATCAAAAAACTGGCCAGAGCTCCTGCCTAAACTGGAGAGGCAATACAATCAGATTGGCGGCTTTGAATTTGAGAatcattattttcctctttCCATCAAGGATTCAAGCGCTAAGTATTCACCAGACTCCTGGAAGAAGGTTAGGGGAGTAAACATTTTAGAACATATCACTAGAATAAGCAATGATCCTAACCAGTTCAATAACATTAAAGTCATTGTTAATCCTCGCTTCGTGTTCAAGGCTACAGTCCACGGCATTTTGGAGTCCATTCATCGTACTGTCAGAGTGGACCGTGACATTGCCCATATGTATCACATGAGAAGCATTCCAAATGAAATTGTGGCAAAACGTTCCCAAATACGGGACACGCATCTCAGGGACTACGCGAAGAGTCTGATCCCGGTCGTTTCTAAAGTCCTAGAGGAAGCACTAGGCAATTACTAAAGTGCATAACTAATAGATTTGATAAATCTTAACAAAAGAAGATACTAAATTTGATTATAAGTttagtaaaaaaagaaattttatgtAAGTATTCCATGACACTgtctaaaaatgcaaaatgcgCTCTAATAAATTTAGCTGGAGGGAAGTTTAGCTGAATGGTGCAAGACAGGAAGCAGTATgggtctttttctttttttgcacagGAAATGAACCGCAGACCCTGATAATCTAAACGATAGCTTTAAGTATTTATTCAGGAATCTAAAAATATGCTGGGAAAGTTGTCAGCCAAGGTAACACAAAGCTTATTAACGTCCACTGGcacattatttacaaaaaagcaGTATTGTGATCAAATGTGATCAAAACTGTATCCAACTAGATTTCTTAGTATTTTGCATACATCCTTTTGATTCTGTAGCTTATAAAAGATTCAAGTAACACAACCAAAAATTGCAACCAATTATATCTATTATTTGTGTGAAATTTCAGTTTTGGGCCAGTATTAACTCAAATATATGAgcggaaataagtattcagactcgttcatattttttgttaagATACTTCCTGTGCATATATCTACTTCAAATTCACACAtgtaatgtcttttgactttgtatgtattcataagcaaaAACATAGAGAATAATAAGCAATGAGTTGCACTGCAGTCATCTCCATTCCTACATTCCATGAAAAACTTGTCTGccataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123932 lncRNA downstream 59492 25243472 ~ 25245244 (-) True G104750
TU123936 lncRNA downstream 60719 25243472 ~ 25244017 (-) False G104750
TU123929 lncRNA downstream 62966 25239110 ~ 25241770 (-) True G104747
XR_004578344.1 lncRNA downstream 89946 25192057 ~ 25214790 (-) True LOC117597583
TU123870 lncRNA downstream 153580 25113977 ~ 25151156 (-) False G104694
TU124309 lncRNA upstream 513586 25833279 ~ 25836038 (-) True G105092
TU124447 lncRNA upstream 767787 26087480 ~ 26087695 (-) True G105219
TU124618 lncRNA upstream 1000339 26320032 ~ 26320770 (-) True G105379
TU124743 lncRNA upstream 1262601 26582294 ~ 26608329 (-) False LOC113526510
XR_004578318.1 lncRNA upstream 1277741 26597434 ~ 26608339 (-) False LOC113526510
XM_034305513.1 mRNA downstream 3323 25295458 ~ 25301413 (-) True LOC117597607
XM_026913566.2 mRNA downstream 122629 25156153 ~ 25182107 (-) False rasgrp4
XM_026913565.2 mRNA downstream 122629 25156153 ~ 25182107 (-) False rasgrp4
XM_026913564.2 mRNA downstream 122629 25156153 ~ 25182107 (-) False rasgrp4
XM_026913563.2 mRNA downstream 122631 25155182 ~ 25182105 (-) True rasgrp4
XM_026913337.2 mRNA upstream 24532 25344225 ~ 25346964 (-) True LOC113526369
XM_026913264.2 mRNA upstream 65632 25385325 ~ 25548928 (-) False si:cabz01090165.1
XM_034305190.1 mRNA upstream 519777 25839470 ~ 25870271 (-) True LOC113526366
XM_026913764.2 mRNA upstream 570606 25890299 ~ 25905340 (-) True loxl1
XM_026914215.2 mRNA upstream 874357 26194050 ~ 26292607 (-) False cd276
XR_003402792.2 other downstream 541955 24752612 ~ 24762781 (-) False clasrp
TU123617 other downstream 593368 24623516 ~ 24711368 (-) True G104473
XR_004578330.1 other downstream 1694288 23590945 ~ 23610448 (-) True mmp23bb
XR_004578321.1 other downstream 2997967 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 4291636 20995341 ~ 21013100 (-) False sertad3
XR_003402763.2 other upstream 65632 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 65632 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other upstream 65632 25385325 ~ 25485121 (-) False si:cabz01090165.1
TU124615 other upstream 919637 26239330 ~ 26241005 (-) True G105376
TU124747 other upstream 1249392 26569085 ~ 26608329 (-) False LOC113526510

Expression Profile