RNA id: XM_026913758.2


Basic Information

Item Value
RNA id XM_026913758.2
length 6759
RNA type mRNA
GC content 0.45
exon number 14
gene id qser1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23794190 ~ 23815913 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCAGAATGGGGAGCACCGCCGCCGTGCACAtctgagtgtgttttttttttttattttggagacTTTATTACACACTCTGATCAGCACACAGCTTTGCCATCTCCCATGCACATCCACCAGCGCGGATCGCCACCGAACCCGGCgcattttgtattaaaatgtgatCGCGGTACGCTTAATGTGTGAATGTTCCACAAAAGTCTGTCGGGAAACAGCGTGAGTCCTGAGCCCGTCGCGGGAGGATGGACGGACGCTACCTGGGTTCGGGCTTCGCGGAGCGGCGGGCCACATCAGGCGAGAGCGCGGATTGGGCCTACAGCAACCCGACCAGCTCCAGTTATGGTGCGACTCACATAGAGACAGAGCTTCCCCAACGGCAATCCTACGCCTCAAGTCATACACTCACTACCTACACCACCTCTCATCACCACACAGGTGTGTCTGGTGTCTTTGATAACAGTCTGCACACCACCGGAGGCAGCACTACTGAATCATCAGTCATGAATTTCCTCTCTTCCATTGAATCCCGAGGCCTTCAGGCTGGACCTGCAGCCACGTCTCTACTTCCCCAGTTCAGAACTTCACCATGGCAGACTGGCACAAATTCTTCAACAGAGCTCTTTCTTACTGGAGCTCTTCCTTCTTCTGGAACGTTTCCTACCCTGTCAGCTCTTTCTTCCTACCAGCACCCCAGCACCTTTCCCACTCGGAGTTTTCCCACCACATCTGCGTTAACTGTTCAGCACACTACGTTTAGCCCATCAAATGGACTGCTTTCACCTAATGACCCTCTACTTCAGATCAAATCTTCCCAAACCACTGTGCCAACAGCTTTTGCCTTTGACCGCCTGGGTGGTGCTTCCCTGGGTGCTAGCCTCCCAATCCAGTCATCCACATATCGTTCAGCCCAGGAGTCTGCACCACATCTCCTGCAGCCACAGTTCAGCCTCCTACCCTCTCCTTTGAGTAACTCTCAGCAGACTATTCCACCTTATGGAGCCCCAATTTTCTCCAGCTCCATCGAACGAGCACTTCAGCGTGAATGTAGTGTCATCAAGCACCACCAGCGGCCTTCCAGCACCCAGCCAGTCCAGCAGCAGCTGTCTGTCAGTGCACAACACTCTTTGCAAGATTACCTACCTGACGATGCTGATGTCTCGTACGAGGATCCTTCTCGACCTGTTGCAAACAGCCCCAATGGAATTCCCAGTCAGGCCATTAATAACACAGCTCAGCAGAAGACCGCCACAGTGCAGCTgcagcaaacacagacacattccTCGTCTGTGCCCTCTTCAGGGTTTTCCTCCACATCTGGAGTGAAAGCCAAGGATGATTCTAACAAAACAGCAGAGCATCTTGGGGAGGGCTCAGAGTTGCATGATCAGGCAGCCTCATCACCCATTCAGCAGCATAGGTATGCTTCCACAGCCCAGAAACATAGCTCTGTGATTGCTAGCCAGTCACAGCCATACACATCAGCACAGCTTTCCAGTTTGATGTCCATCGGCCCTTCACAGACATACATTACATCTCAAAGTCTCATGAGCAACCTTAGTGAACCACAGGCCTTCTCTCCCAATCAGCCTGAGAAACTACCTTCTATATACAAAACGTTGCCGTCGTTGGCTACTCAGTCAGAAAACGAGACATCTGTTAGCCACTCTCTAATGTACGCTTCTGGCCAAAAGCACATAATGTCTTCAGCATCAAACAGAGAGGAGTATGATGAGCAGACGCAAAGACTTTGTATGGGCAATGCCTCTCACAATTATTCTTCCAGTCACTCTCAGAGTCTGTCCACTGTCAGTTATTATGCCCAGGGAGCAGAATCTGTTAGTCCCTCTCAGAGCTATGCATCAGGCCAGTCTCTCACACCAAGTCCTCCATTCTCTTCCTCCTATGGCCACAGCTTACCATCCAGTAATTCCACCCAGGATTACACCCTAATGCAGCCTTCTCCAAACAAGACAGATGGTATACTGTTGCAGCAGACTCAGAAATACTTGCTGTCTGACCAGTCAACATCATCCACTGCCGCTTATACACAAGCCATCCAGAACAACCAGTCCTCAGTGGAACAAAACCCAGCCTATGGCAAAGGGAAGGAAGATGAGAGTCTGTTCCTCACCTCCAAAGAAAACTGTGGAGAGCTTCCTATTCAAGATATGCAGGCATTACAACAGGCTTCAATAAGTAGTTCTACCCAGACTGTCGCAAACAATGATGTTGGGGTGCAGAGCAATGTTGTATATGTTGTTTCAAAAATGGAAGACAGACAAGCACATAGCGTCATCCGAAGCAACTCTCGATCCGAGGATCAGCTAATAGGTCTTGCACCAATGTCATCTATCAAGGATGAGAGAATGAGTACTTTAATTGGGCAGTTGGTAAGCACTGCCCATTCTCATGTAACCTCTGGCACAAAAAATAACTCTACATTAATGCAGTCCTCCCATGTGGCCTTGAGCACTGATCAGTTGAAAGAACACGCTGTGCTTCTCAAAGTTCCCACTGCTCAGCAAGAGGACCAGCAAACTCAGAGTAACAGAGGAGATCAGAGGCAGTTGTCACAGGAACAGGCACAGTTCATTCAGCTACCCAGTGCCCAAGTCCTTCTGGAGCCCTCACAGATGATCCTTCTTCAACAACCTTTGCTCCACACAGGGACAAATCAGTCTAAGCCAGTCCAAATGCAGCCAGTTTCGGTTCAGTTCCTgcaaatgaataatgaaatccTGAATTCCGCAGTCAGTGCAATTGAGAATCCGCAGATAACCCACCAAGTTGTGGAGTCCACAAAGCAACATCTGGTACAAAAAGACAGTTTCAACAATTCAACAAATCAGCATGATGCCAAACAGCACTTTACCTTAAGCTCCATCTGCTTCCCTGATTCCATGCTGATGGCAGATGAGAGGAACATTCTGTCCAATGTGGATGACATCCTAGCTGCCACAGCAGCTGCCTGTGGAGTCACACCACAGGACTTTAAAACCTCGTCCTCTGAAGGGGACTTAGCATCGATATCCAGCCCTTCAGACTCTAAGTGCCACTATGAGTTAGTTAATAACAAGCATGAACCTAATAGCTACTCTTCACAGCAcatgatctcaaacacacagacCATTACTTTATCTGTAAATGGTGGTCAGCTGACAACAGACATTCACAAAGAAGTTGATGGACATCAAGCATTTACACCAccaaactctcacacacagcaaaaTAACTCTAAGCATGAAATATCTGAGAAAGTGACAAATCATCACAAGAAAAATGAGGTATTACCCAAGGAACTTATTAGCAATGATTCTTCTTTGAATTCTAACGGAGGTACTATAAACACGTTTGCCAACAACCACACAGACTTTCACATAATCTCCCAGGAATATAACCCAAATAAGAATCAACCCAAAGTAGTGAAGAGTGTTAAGATGGAGGAAAAATTTGCAGAATACTCCTCTGATGGTCTTCCTAAGAAGCGCGTCAGGTCAAAAGGTTCTTCCAAGCAAGCTACCGAAGATGAAAATGGTCAACCTAAAACTCAAAAAAGAAGTGGCCAAGTAAAGCGACAGAACTCCAAAGGAAGTGAGACAAGTTCGTCCTCTACCTCTGAGGGCTGTCTTGATAGCTACCAGCAACAAGAAAGAATACGGCAAAAAATAAGAGAGGTAGAAGAAAAACAGCCAGAAGTTAAAACTGGGTTCATTGGATCTTTCCTAGACTTTCTTAAATCTGGACCCAAGCAGCAATTCTCCTCTCCACCCATACGGTCACCCAACCgcacaagaaagtcttcagttACCAAAAGACCTTTTAATCAATTGTCAGTGCCCCCTAAACTCATACCCCCATCAACTTCACTGGTTTCACCAGACATCAGTACTGTTAGCTCTACTAAAAGACTGGATGAGGAGCTTCACAAGAACTTGGAGACACTTCCATCTTTCTCCTCGGATGAGGATGAATCAGTTGGTAAAAACCAAGACCTTCAAAAGAGCATTAGTTCTGCACTCTCCTCTCTAGACGAGCCTTCAGACAAGCAACAGTCAGACAGCAAAAGTTCAGGTGACACCACAAGTCAAGAGCAGTCATCCAGCATCCAGTCTGCAGATACAAAGCTAAAGGAGCAGCAAAAGCCTGGGCTGAATGAAGTGCCAGTAGAGGAACTGGTGAAGAACATACCTGCCAACAAACTTGCGGTATGCCTGACCACCGTAGCTATCGAAGGCCTCACGGATGAGGAGCTGTCAGACAGTGGGGAGGAGGGCATGTACCGAGAACGTGATGAGTTTGTGGAAAATGAGGACATAGAAAGCTTGCAGGTCACACTGAAGGCAGGAATAGAACCTCCAGCCATTTGGAAGGTGCAAAAGGCCTTGCTGCAGAAATTCATACCCGAGCTGAGAGATGGAAAACGAGTGTTTTCTGCTACGAACAGTTATCTGGGTTACTTTGGAGATGCTAAAACAATGTACCGGAGAGTATACGTCAAGTTTCTCGACACTGTGAACAAGCGGGAGTACGTGCGAGTCTGCAACAGAAAACCAAGGTGCAAGCCCATGCATTCCATGAGAGGCTCTCAGAAGGCTCTGCTGGCCCAGAGAGCTGCCGCACCAGCCATGTCCGACTCCTCCGCTCTGAAATCCAGCACAAAGCAAAGCTTGTCCAAACCCAGGCCAAAGCAGCCAAAAGCCAAGGCCGAACCTCCAccgaaaaaaaggaagaaatggaAGGAGGAATTCACAGACTCAACAGAGTTGGCTTCTCCCGAAGCTGCAGGTGAAGATGATGAGTTTATACCTCCGGTCCCATTTGCCTCACGCTTCCTCAACACCAGGACGATGAAGGAGACCTTCAAGAGTTTCGTGGAGCTCCTGATCAGCGTTGCTCTGGACGCAGACGTCATGATCACACTGGAGAGAGAGAACGATGAACTTCTGCTGCCTCATATGAAGAGAGTGGATGGCATGATCACAGACAACAGGAGGAGGCTGCTGCCCAAACTGCGAGTGGGTCAGGTGTTCAAAAATGCTTTAGACAGCTTTCCCGAGTTGTCAGTGGTGACAGAGCTGAAAACAGATGGAGAGACCCCCACTTTTAAAGTCAGACTGAGTGGGAAAGCGTACAACAGGAAGACTATGAAACCTGCTAAATCCCCTGTTAAACTTCCCTTGGAGTACACAGTGGAGCAGCAGAAAACTCACTGGTTTTCTCTCTATCATTCACTGCAGCACTACAAGTATCACACATATCTGATGTGTATGGAAGAGATTGCACTGTTGCGCTCACGCGGCGTGGATCTGGGGCAGGAGGAGACTGTGCAGACATGCATGGGGAACCAAGTGTGGGTGGAGGGTCTGTTTGACCGCTTCGGAGAGCTTCTCACCCAGGTGCAGCAGGCCTGCCTTTAACCAGACAGTAGAACAACAAGTGGATGCAGTTGATGGGCCCTTTCTAAAGCACTAACTGATAAGATGGATATGGAGAACCACCAGAAGATGGAAAAGCACCATGGGAATCATGTGAAAACTCTGAGAAGATGATTAATCATAAGAAGAGCCACTAGAAGCTGGAGAACTGTCTGAAGATGGAAAACTCTAAACTATGTACAGACatgagaagatgaagaaaatggCGAATCTCAAGAAACAGAGAACCATGAAGGGAGAGAAAAACCCTGAGAGGGTGAAGAACCCTGAGgatagccattagaagatggagAAGGTGGAGAATCACAAGACGATGGAGAACCACAAAAAAACGACATGTTGAAGCATTAGACTGAGAAGCATTAAACGAGCATTTCACACCATTAGaatatgaaaaggaaaaaatgtgataaaaacaTTGAACCATGAGGAGACTGTAAGATAATGGAGAATTGAAGACAAGAAGATGGAGAACCTCAAGAAAAACTGGGAATTATAAATAGATTATGAAACACATGAAGATTTTTATAAGAATTTATACAAAGTACAGCGGCAGAACTTAGATGTCTGTTCTTGGAACCACAGAGACAATAGATTTTAGTCATGGTCTTTTTAAAAATCGTGTTttaagttttttattattatctaatcGGCCAAACTGGACACAGATGACACGAAAGTTGGCCGATTGTCATTCTCTGATGGTTAATGAATGTGTGGTACAGGGCGATTTACCTTGAAATTTTGGAacactaattttaaaaagaacaacATTTGAGTTTGGAGAAAGAGGGGTGCTAAtgattgtataaatatataaatacatagatatatatgtaaaaaactTTCTATATGATAGTGTACATTTTGTAAAGAGAGCTCTTTGGATGGATTTGACTCTTTATGTGCTTTTAAACTCCTTTTATATGACAGAGGTTATAAAGATGGAGTTGGTGCAATTCTAATACATCTTTTGTGATAATGTTGTAATAAACAGCATTGGAACTATTTTCTTGCAGGAAACTATATTTTATAGTCACTCAAAACCCTTTatcttaaacataaatgtatttttccacAAAGGAAATATTGTTTCCTGATCATTTTGTGGTACACTCTGTTTTACAAAAGAGATGCCCAGTGTGTTTATATGGTAAATTTCTATCCCTGACAGTGTGTCTTAAGATCACTTCTTTACTGTAGAATATTACAAATTTGCCGCAGTTTTGCACAGATTACGATGCTTTTGCTTTTCAACTGTAGCTGTGATACAACCTGCGAGTATTTTTTTGATATGCGAAAAATAAATTTCCTACCATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123014 lncRNA downstream 55451 23732870 ~ 23738739 (-) True rpl35a
TU123018 lncRNA downstream 55451 23732870 ~ 23738739 (-) False rpl35a
TU123026 lncRNA downstream 94501 23648684 ~ 23699689 (-) False rnpepl1
TU122848 lncRNA downstream 218511 23572589 ~ 23575679 (-) True G103820
TU122845 lncRNA downstream 280862 23512157 ~ 23513328 (-) True G103817
TU123411 lncRNA upstream 598987 24414900 ~ 24464578 (-) True G104291
TU123423 lncRNA upstream 664448 24480361 ~ 24484072 (-) False sipa1l3
TU123422 lncRNA upstream 664478 24480391 ~ 24484072 (-) False sipa1l3
TU123452 lncRNA upstream 717824 24533737 ~ 24534419 (-) True G104320
TU123618 lncRNA upstream 815745 24631658 ~ 24661348 (-) False ttc9b
XM_026913499.2 mRNA downstream 7861 23765537 ~ 23786329 (-) True depdc7a
XM_026913498.2 mRNA downstream 12797 23765537 ~ 23781393 (-) False depdc7a
XM_026914238.2 mRNA downstream 55411 23733190 ~ 23738779 (-) False rpl35a
XM_026913914.2 mRNA downstream 62775 23701784 ~ 23731415 (-) True abcc5
XM_026913558.2 mRNA downstream 94483 23684118 ~ 23699707 (-) True rnpepl1
XM_034305496.1 mRNA upstream 770 23816683 ~ 23826844 (-) False prrg4
XM_026914413.2 mRNA upstream 870 23816783 ~ 23826651 (-) True prrg4
XM_026913297.2 mRNA upstream 19259 23835172 ~ 23843472 (-) True eif3m
XM_026913627.2 mRNA upstream 61794 23877707 ~ 23926937 (-) False kifc3
XM_026913625.2 mRNA upstream 61794 23877707 ~ 23913263 (-) False kifc3
XR_004578330.1 other downstream 183742 23590945 ~ 23610448 (-) True mmp23bb
XR_004578321.1 other downstream 1487421 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 2781090 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 2827280 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 3813931 19980069 ~ 19980259 (-) True LOC113527007
TU123617 other upstream 807603 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 936699 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 1569412 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 1569412 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other upstream 1569412 25385325 ~ 25485121 (-) False si:cabz01090165.1

Expression Profile