RNA id: XM_026913927.2


Basic Information

Item Value
RNA id XM_026913927.2
length 3037
RNA type mRNA
GC content 0.50
exon number 23
gene id ppfibp2a
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29294886 ~ 29330953 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGCATCTGCTCCTCTATTTATCTGAGTTGATCTaaaattattagtttttttatagATCGAGGCTTTCTAGTGCACACTTTGATTGCAGTATGGATTCTTGTGAATGTGTTCTTGGGCTTGGTGAAGGAGTGGAGCAGGAGAGATAAATCAGACGCCAGCCACATGCTGGAAGCTGCCTCAGAGCAAATGGATGGAATTATAGCTGGGTCTAAGGCTATTGTTCCAGTGGATGAGACAAGTTGTGTCCCAGATCTGCTGGAGTCTGCAGACCGCTGTATGTCTCTGAGGGCTCTACAGCTGGCAGAGGATCTAAAGGACGCCCTGGACACTGAACTCTGCAAGGAAGACAAGGACATCCTGAGGAGACAAGTTCCCACCACTACAGTGCACACTCTCTTATTGTGGCTGGACAAAAGTTTGGTCAACCTGCGGGCGCTGGGAAACAACGAGAGCTATCAGGAACGGCTCTGTCGACTCGAGGGAGATAAGGAATCGCTTGTGTTACAGgtgagtgtgttgaCAGACCAGGTAGAGGCTCAAGGAGAGAAGATCAGAGACTTGGAGAATTCCCTTGAAGAGCACCAGCTCAAGCTAAACTCCACCGAAGAAATGCTGCAACAGagctTACTCCAGGAACTGAGGTTGCTGAAGAATAAAGTGGAGGAACTTGAAGATGAAAAGTCGCAGTATGAGAGAAAACTCAAGGCTACAAAGGCAGAAATCTCAGGCCTTCAGCACCTCCTGCAGTGTAAGAATGCCGAGATCGAGAACCTTCAGGCTCAGCTCCTTTCCAGATCACCCATGTCCACAGACAGTTCAGAGAGAGAGGAGTTATACAGGAGAAGGCTCAACACCAAACATCAAGAGCTTCTTAAATTAAAAGCCGGAATGGAATTATTGATTGCAGCCAACGATGAAAAGGATCGGCGTATAGAGGAGCTTTCTCTTCTCCTGAGCCATTGCAGACAGTTTCGAGACGGCAAGGCCTTGTTTCAACAGACGGCAGTGTCACAAGGCAGcagtgaagaagaagagcaaAGTGCAGCAGTGAAGACAAAAGCTCTCACTATTAAAGCTCACTCAGAGATGATGTCTGGTGCGTCCTCTCCCCTTCTCGCATCCAAAAAAGCTGATCAAAAGGAAACAGAATCGAGGTCACAGCCGAGAAATCTGTCCAGCAGCCAGGAAGATCTGAAAAGTGAAGCAACACAAAAGTCTGTGATCGGGACTCCTGTAGAACCTGCTTGCTCAGACGAGGGTTCTCAGTCCAAACCGGAGAACGGGAAATGCATCCTGATAGACGGTAATAAATGCGACGGCTCAGAGTCGAGGTCTCAAGAAGGCAGCCAGGATGGAGACGTTAACCAGAgaaAGGCAGAGAGGACGGAAGACCTGAGCGCTTGTGAGCCTTCACCCACGTCGTCTGGTGTGGATTCAGGAGAACATTCCCCAGTCTCACAGGAAAACCTGAAGAACAACAAGAGCATACGCAAACTCTGGGGGAAGATCAGGAGGACGCAGTCGGGGGGTCTGGGGCCGTGCGATGATCTGGAGCCCACTGAGTTTAGGAGAGGAGGATTTAGAGCCACAGCTGGACCACGACTGGCTCGAACCCCCGACTCGGCTCGCTCCGTCCGGGACATGACGGTCCCGTTCCCCAACTGGACCACCGAGCAGGTGTGTGGTTGGCTGGAGGACTGCGGACTCGGTCAGTACGTCAACTTGGCACGTCAGTGGGTGATCAGCGGGCAGACGCTCCTCTCCGCCACGCCGCAGGAATTTGAGaagGAGATGGGCATCAAACATCCGCTACACAGAAAGAAACTGCAGCTGGCTCTCAGGTCATTCAACAACAAGGCGATGGAGAAATCCTCTGAGCTCGATCACATCTGGGTCACACgCTGGCTAGATGACATCGGCTTACCTCAGTATAAAGACCAGTTCCATGAGAGCAGAGTGGATGGCAGGGTGCTCCAGTATCTCACAGTCAACGACCTTCTGTTCCTGAAGGTCACCAGTCAGCTCCATCATCTGAGCATCAAGTGTGCCATCCACGTCCTCCACGCCAACAAGTTCAACCCACACTGCCTGAGGCGCAGACCAGGAGACGAGAATAAAACCTCTCCGTCTGAGGTGGTGCAGTGGTCTAATCACCGCGTGATGGAGTGGCTGCGCTCGGTGGACTTGGCTGAGTACGCTCCTAATCTCAGAGGCAGCGGCGTTCACGGAGGCCTCATAATCCTGGAGCCTCGGTTTACCTCTGAGACGTTGGCCATGTTACTGAACATCCCTCCTCAGAAAACCCTGCTCAGGCGCCATTTAACCACCAACTTCAACAGTCTGGTGGGAGCTCAGGCTCAGCAGGAGAAACGCGAGTACGCCAACGCCAGCGGGCACACGCCGCTCACCACCACCGCTAAAGTCCGGCCAAAGAAGCTCGGCTTCACAAACTTCAGTCacctgaggaagaggaggcCTGATGATTCAGCGGACTATATTTGCCCAGTAGAAATGGGAAACTCGCCGGTTTTGAATGGTACGGCCCTCCAGCTCTAGCATAGCTTCAGTGCTTCTCTAGCTTCCAGCTTCTCCTGGACTCGGACAGACTGGATCAGAACGAGATCAAGTGATCACTGAAGTCCTGATCTTCCCTCGACAATCTCTCTTACTGTGATTGGTTTGTTTGTCTTCTCCACTCGGATGGACTGCACAGCTGGATGGATTCCCGCTCATTCATCTGGACATTATTTCGttataagccttttttttttgcaatgcttCATCGCCACCCCTACAGTTCTGAATCATCAATGCTAAACGCTTTACATAATGAATAAACCAGTCAATTAATGTCTTCACTCTTTGTTTTTtatgtccaaatatttttccTGTATATTTATTCTCTGCATTGCTAAATTCATAATCAGAATTATTGCTTATACTGCAGACAAACGCTTATATTCTACATACTTTAGATTTAGTGATCAGGGATGCAGCGATGTAATTTGTGTGAAATatctaatgtaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402809.2 lncRNA downstream 14706 29273077 ~ 29280183 (-) True LOC113526826
TU126422 lncRNA downstream 92045 29202007 ~ 29202844 (-) True G106951
TU126243 lncRNA downstream 489459 28805033 ~ 28805430 (-) True G106772
TU126180 lncRNA downstream 515871 28764739 ~ 28779018 (-) True G106713
TU126166 lncRNA downstream 533152 28761518 ~ 28761737 (-) True G106705
TU126683 lncRNA upstream 289849 29620799 ~ 29661699 (-) False hipk3b
TU126679 lncRNA upstream 328691 29659641 ~ 29677509 (-) False hipk3b
TU126704 lncRNA upstream 349313 29680263 ~ 29707900 (-) True G107193
TU126702 lncRNA upstream 393164 29724114 ~ 29724377 (-) True G107191
TU126723 lncRNA upstream 434426 29765376 ~ 29844857 (-) True G107210
XM_026914399.2 mRNA downstream 89446 29192381 ~ 29205443 (-) True mafa
XM_026913456.2 mRNA downstream 442253 28808107 ~ 28852636 (-) True LOC113526432
XM_034304966.1 mRNA downstream 471059 28808107 ~ 28823830 (-) False LOC113526432
XM_026913490.2 mRNA downstream 495526 28791791 ~ 28799363 (-) True cenpn
XM_026914369.2 mRNA downstream 504079 28782024 ~ 28790810 (-) True atmin
XM_026913423.2 mRNA upstream 14385 29345335 ~ 29369551 (-) True syt9a
XM_026914401.2 mRNA upstream 67654 29398604 ~ 29479432 (-) True spon1a
XM_026913638.2 mRNA upstream 268635 29599585 ~ 29657809 (-) True kiaa1549lb
XM_034305475.1 mRNA upstream 337957 29668907 ~ 29714001 (-) True hipk3b
XM_026913661.2 mRNA upstream 396140 29727090 ~ 29766745 (-) False lrch3
TU125182 other downstream 2137749 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 2686560 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 3053884 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 3745961 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 371202 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 1012581 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 1399008 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 1485629 30816579 ~ 30819614 (-) True G107803

Expression Profile