RNA id: XM_026913968.2


Basic Information

Item Value
RNA id XM_026913968.2
length 4739
RNA type mRNA
GC content 0.48
exon number 26
gene id glg1b
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27781821 ~ 27823226 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCGCTTTAGCTGTTAGCTGTTAGAGGAAGATGGCGGCGGATAGCAGACGCGCTCGGCTTCTCCTGCGCTTCATCATGTCCCAGTGCTTCTGCGTGGTTGTGGCGCACGGGCTAAAACCAGGGGCTAATGGTAACCTCCATCCTGCTCCTCCGGTGGTGAAGGTGCCCGTGAACCGGCCCCTGAAGCTCGGAGCGCCGAATTCGGTGAATATGGGAGgcgcggcggcggcggcggtcTCGCAGGCGAGGAGGGCGCTCAGCTGGAAGCTGGCAGAAGAGGAGGCCTGCCGAGACGACGTGAGCCGGCTGTGTCCTAAACACACCTGGAGCAACAACCTGGCTGTGCTGGAATGCTTACAGGACAGAAAGCAGgaaACAGAGATCGCTTCTGACTGCAACCATTTGCTGTGGAACTATAAACTGAACTTGACTACTGATCCCAAGTTTGAGTCTGTAGCAGTTGAAGTGTGTAAAAGTACAATATCAGAGatTAAAGAATGTGCAGCTGAAGAGAGAGGTAAAGGCTATCTAGTGTCCTGCCTGGTGGATCACCGTAGCAACATCACGGAGTACCAGTGCAATCAGTACATCACGAAGATGACCAGCATCGTCTTCAGCGACTACCGCCTCATATGCGGGTTCATGGACAAGTGTCGAGAGGACATCAACACCCTGCACTGTGGAAGCATCACCACTGGGGAGAAAGACCTGCACTCTCAAGGTGAGGTCATTGCATGTCTGGAAAAAGCTTTGGTACGAGAAGCAGAGCAGCAAGACAAGGTTCACCAAATCCGAGACGACTGCAAGAAGGCCATCATGCGAGTGGCCGAGCTCTCGTCTGACGACTTCCATCTGGACCGCTACCTCTACTTTTCCTGTCGGGATGATCGAGAGCGATTTTGTGAAaacACCCAAGTTGGAGAAGGCAGGGTTTACAAATGTCTTTTCAACCACAAATTTGAAGAAGCAATGTCTGAAAAGTGCAGAGACGCCCTGACCACTAGGCAGAAGCTGATCGCTCAGGACTATAAGGTCAGTTACTCACTGGCTAAAGCGTGCAAGGCTGACCTCCGCAAATATCGCTGTAGCCTGGACGCCAACATGCCCCGAGCCCGAGAGGCAAGACTGTCGTACTTACTCCTCTGCCTGGAGTCTGCAGTTCACAGAGGACGCACAGTGAGCGGAGACTGTCAGGGTGAGATGCTGGACTACAGGCACATGCTGATGGAGGATTTCTCCCTGAGCCCGGAGATTGTGCTGCACTGCCGGGGCGAGATCGAGGCTCACTGTTCCGGCCTGCATCGTAAGGGAAGAACACTGCACTGTCTCATGAGGGTGGGCCGAGGAGACAAGGGGCCGATGGACAGCCACTGCCAGAATGCActcCAGGCACTCGTCCAGTCTGCTGACCCTGGTGCTGATTACCGCATTGACCGGGCTCTCAATGAGGCATGCGAGTCTGTAATACAGACAGCTTGCAAACACATCCGCAATGGAGATCCCATgATCCTCTCATGTCTCATGGAGCATCTCTACACAGAAAAGATGGTAGAGGACTGTGAGCACAGGCTGCTGGAGCTGCAGTACTTTATCTCCAGAGACTGGAAGCTCGACCCTATTTTGTATCGGAAATGCCAGAACGACGCGTCCCGGCTTTGTCACACACACGGCTGGAATGAGACGAGCGAGATGATGCCCCCAGGCGCTGTGTTTTCCTGCCTCTATCGTCATGCTTACCGGACAGAAGAACAAGGCAGACGGCTAACGAGGGAGTGTAAAGTGGAAGTCCAGAGGATCTTGCATCAGAGGGCTTTGGATGTGAAGCTTGACCCCGAACTCCAGAAACGCTGCATGACTGACCTGGGAAAATGGTGCAGTGAGAAGACTGATACTGGTCAGGAACTGGAGTGTCTACAAGACCATCTGGAGGATCTGTTGGCAGACTGCAGGGATGTGGTGGGAAACCTGACCGAGCTCGAGTCCGAGGACATCCAGATTGAAGCGCTGCTGATCCGAGCGTGTGAGCCGGTCATCCAGACCCACTGCCACGACATGGCTGATAATCAGCTAGACACGGGGGATCTGATGGAGTGCCTGGTGCAGAACAAACATCAGAAGGAGATGAATGATAAATGTGCTGTTGGAGTGACGCACTTCCAGCTGATTCAGATGAAGGACTTTCGCTTCTCCTATAAGTTCAAGATGGCCTGCAAAGAGGACGTCCTCAAACTGTGTCCTAACATTAAAAAGAAAGGTGATGTAGTGATCTGTTTGAGCACCACAGTGAGGAATGACACTCTACAGGATGTGAAGGAGCAGCGAGTGTCCCTGAAGTGTCGCAGACAGCTGAGGGTGGAAGAGCTGGAAATGTCGGAGGACATTCGTCTAGAGCCTGAGCTGTACAGTGCATGTAAGAAGGATATCGAGAGGTGGTGCTCTTCTGTTTCATTCGGCAACGCTCAGGTCACTGAGTGTTTGAAGGAGAATAAACAGCATTTGTTTCACACATGCCATCAGAAGGTGTTTAAGCTGCAGGAGACGGAGATGATGGACCCTGAGCTGGACTACCAGCTAATGAGAGTCTGTAAACAGATGATTAAGCGTTTTTGTACGGAGTCTGATGCCAAGAACATGCTGCAGTGcctgaaacagaacaaaaacagtGAGCTAATGGACCCCAAATGTAAGCAGATGATCACCAAGAGACAGATTACTCAGAGCACAGACTACAGGCTTAATCCTGTGCTACGGAAGGCCTGCAAAGCAGATATTCCCAAATTCTGTCAGAACATCCTGAACAAGGCCACTGATGACAGTGAACTGGAGGGTGAGGTCATTTCCTGTCTCAAGCTCAAGTATGCCGACCAGCGTCTGTCTTCAGACTGTGAGGACCAGATCAGGGTGATCCTGCAGGAGTCGGCCCTTGACTACAGACTGGATCCTCAGCTTCAGCTTCACTGCAACATGGAGATCACAGACTTGTGTGCAGAGGAAGCTGCTGCGCAAGAACAAACAGGCCAAGTGGAGGAATGTCTAAAGACCAACCTGCTGAAGCTCAAGCATGATGCTTGCAAAAAGGAGGTTTTGAACATGCTCAAGGAGAGCAAAGCAGACATTTTCGTGGATCCGGTCTTGCACACAGCCTGTGCCTTGGACCTGAAGCACCAGTGCGCAGCGATACCCCCCGGACGAGGCAGACAGATGTCTTGTTTAATGGAGGCTCTCCAGGACAAGAGGGTGAGACTGCAACCCGAGTGTAAGAAGAGACTGCAAGACCGGATAGACATGTGGAGCTATGCAGCCAAGGTGGCCCCAGCTGAAGGCTTTGCTGACTTGGCCTTCCAAGTGATGATGTCACCTTCCAAGAATTATATCCTGTTGGTGATTGCGATGGCTCTGTGCGTCCTCTTCCTGGTGGGCTTGTTGTGTGGCCGCATCACTAAACGCGTGAAAAGGGAACTGAAGGATAGGTAGAGCCTGGATCCTGGGCTCATACATCTCGGACCCattctaaaaaaagaaaaaaaaacaaaaaaaaaaagaggcctAGACCCTTTTGACCGCTTATCCACCGTTCTAATCCTGACCTGAGTGTCCTGCGTTACCATCCCTGACTTGGGACGCTGTAAGTTAAAGTGGTGCTGGGGTCAGTGCCATGTTACAGGCTCATTCTGCTCCATGCTGCCCCCTGCTGTGAAAGTCCCAGAATACACATATCAAAAGTCATCAGACTCGAGCATTCTGGGACGTGAATCTGTGCtttccttttccctttttttttttttttttttcctaattttgattgttttattgaaTGCTTGATTGACTCACTGTGCAAACAACATGCCATGTTGGTGACAGATTTTGGAAACTACTTTCTTTACTCCATTGCATagcaatgcatttttttctaggatttagggtttttttttgcactctgAAACATTGTACAGGTATGCAGGTATTCCACTCAGAAATACAGCCATACAGCTTcactttttacaaaaaaattagtaTAAATATGGGGCTCTATTGTCCCAAATCACTGGATCTGAACATATTAggattatttgaaatattttgtgtgaaaatgtggactgaagatgAAAAGTACATTTGTAACTGTTGGAGTTAGACATTATAATTCCtgtgatattttaaataattgaataaccTATGAAGAAACTTTATAATCTATAAGATTAGAATAgaggactgggatcctgtgcAAAGCATAGAACAGAAGAAAAACGTTGAGTTAATATTACTCTTTTGTGAATTAGTGTCCTTCTGAAGTTAGGGCTATCCAAAAGAGTTGATTATACTATATACTTATGGTATAGAGTCAAATCTGGAACAAGTCAtactcttattttttttttctttatctagtctacattttcacacttggcacCTCATGAAGAGACGTCTTGCTTTGAGAGGAAATGGTTTCAAAACAACCTTTCCCTCTTTTTAGTTGCTAGCGAGATTCACTTTGGTTTATGGTTTTGCTTTTGTGATTTgaggacactttttttttttttttttgttttgttttgttttgttttgatggtCACCTTTATCTAACAGGGATTTGATGAGCAGGTGAGGGGAATTACAATTCATTTCTCTAATCTCCAAGTGATTGATCATGTGAACAACTTGGTACCTATTcagaatttaataaaaatcttacAGGGGTGTGTATAGTCTCTAAAAGAGGACGAAACATCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125590 lncRNA downstream 21 27779132 ~ 27781800 (-) True G106193
XR_003402778.1 lncRNA downstream 593029 27188342 ~ 27188792 (-) True LOC113526487
XR_004578372.1 lncRNA downstream 636947 27143707 ~ 27144874 (-) True LOC117597606
TU125118 lncRNA downstream 652649 27123277 ~ 27129172 (-) True G105842
TU125109 lncRNA downstream 674250 27105368 ~ 27107571 (-) True G105835
TU125592 lncRNA upstream 38615 27861840 ~ 27905029 (-) True G106195
TU125660 lncRNA upstream 121591 27944816 ~ 27945033 (-) True G106258
TU125661 lncRNA upstream 130293 27953518 ~ 27953990 (-) True G106259
TU125662 lncRNA upstream 131039 27954264 ~ 27954479 (-) True G106260
TU125666 lncRNA upstream 140546 27963771 ~ 27964010 (-) True G106264
XM_026913635.2 mRNA downstream 13018 27734339 ~ 27768803 (-) True si:ch73-386h18.1
XM_034304991.1 mRNA downstream 73050 27662408 ~ 27708771 (-) True otogl
XM_026914020.2 mRNA downstream 122984 27602226 ~ 27658837 (-) False ptprq
XM_026914381.2 mRNA upstream 2099 27825324 ~ 27846822 (-) False wdr59
XM_034305151.1 mRNA upstream 2099 27825324 ~ 27846822 (-) True wdr59
XM_026914111.2 mRNA upstream 31611 27854836 ~ 27859361 (-) True cog8
XM_026913761.2 mRNA upstream 41884 27865109 ~ 27878619 (-) True zdhhc7
XM_026913760.2 mRNA upstream 41884 27865109 ~ 27878618 (-) False zdhhc7
TU125182 other downstream 624681 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 1173492 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 1540816 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 2232893 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 1878927 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 2520306 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 2906733 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 2993354 30816579 ~ 30819614 (-) True G107803

Expression Profile