RNA id: XM_026913976.2


Basic Information

Item Value
RNA id XM_026913976.2
length 2315
RNA type mRNA
GC content 0.46
exon number 3
gene id mtif2
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23578039 ~ 23582080 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGGAAGCTTTGGGACGGTAGGAATTCAAAGTCAATTGGTTAATGCTTCATGCCATGATTAAGAGGTTTTCTGTCCTGATCGGGAGGGCATCAGCCCATTGCCTTGATGTTCCACTATACACTCCCCATCATGTACGATACCTGGCTGCTAAACCGGATAGAGTACATGGAAAAGCTAAGAAGTTTATCCTGAAACCAGTGAAATTAGAGAAACAGGAGAAGCAAGAAGTGGAGATCAAACAGTCTATGACTGTGTCTCAACTTGCTGAGGCTATGAACAAAGACATAGATCATGTATATGAGGCCTTACTGAACACAGCTATAAATATCAATGATCTGGAACCAGACACTGTGTTGGAGGAGAAGTGGCTAAAAGAGGCTATAAAGAGGTCTGGGATGAAGTATAAATGGGCCAAGATAGTGGAGAATGAAGTCAGAGAAAACAAAGATGTCCAGAGACAACCACCACCAGATCCTGCTAGTTTAGTGAACAGACCTCCAGTAGTAACTATTATGGGGCATGTGGATCATGGGAAGACCACGCTGCTGGACAGCCTGAGGAAGAGCCAGATTGCTGTACAAGAGGCTGGAGGCATCACGCAACACACTGGAGCGTTTCTGGTCCAGCTTCCTTCTGGTGAACTCATTACGTTTCTGGACACCCCTGGACATGCAGCGTTTTCTGCTATGAGGGCTCGTGGTGCCTTGGTTACTGACATCATCATTCTGGTGGTTGCAGCTGATGACGGAGTGATGAAGCAGACCATCGAGTCCATACAGCATGCCAAGAAAGCCAAAGTGCCAATCATTGTGGCAGTGAATAAATGTGATAAGCCTCAGGCAGATCCCCAGAAAGTGAAACAAGCTTTGCTGGCCCatgatgttgtgtgtgaagagtTTGGAGGAGACGTCCAGGCTATCCATTTGTCTGCTTTAAAGGGGGAGAATCTGATGGAGCTGGCTGAAGCCACAGTAGCACTTGCTGAGATGCTGGAACTGAAAGCTGACCCTAAGGGTCTAGTAGAGGGGACTGTCATTGAAAGCCATACAAGCAAGGGCAAAGGATCTGTAACCATGGCAATAATCAAACGGGGCACTCTAAAGAAGGGCTGCATACTGGTGGCAGGAAAGGCCTGGGCTAAAGTGCGCTTAATGTTTGATGAGAACGGCCGAACTGTGACAAACGCAGGGCCTGGCATTCCTGTAGAGATTGTTGGCTGGAAGGAACTACCTTCTGCTGGTGAAGAAATTCTGGAGGTGGAGTCGGAGCAACGGGCTCGGGAGGTAGTGGAGTGGCGCACATACATGGAAGAACAGAACAAGTTGAAGGAGGATCAGCAAGCCATCGAGGCCAAGCAGAAGCAACACCAAGAGAGCTatcagaaagagagggagagactggCGCATCTCAACTGGAGGCAGAGGAAAGTTGCTCTCTACAAGGCCAACAAGCACCATATAGCCTCCAGACCCAGTGAGAAAACCGAGGCTGAGGATCCCAGTCTGAGTCTCATTGTCAAAGGTGATGTTGATGGCTCAGTGGAGGCAATTTTGAACATTCTTGCAAGTTATGATGCAGAGGAACAGTGTGTCTTAAATATAGTGCATTTTGGTGTTGGGGATATCTCAGAAAATGACATTAACATGGCAGAGACGTTCTCAGGAATAATATATGGTTTCAACATTGGCGCTAATAAGTCAATACAAGACATGGCTGCCAAGAAGGGCATATCCTTAAAGATGCATCGTGTCATCTACCATCTGATAGATGACCTGAAAGAGGAGCTTAGCAGTAAACTGCCCCCAACCACTGAGGAGAATATAGTAGGAGAAGCATCTGTTCTGGCCACATTTGATGTGACTGTAGGGAAGAAGAAGGTCCCAGTGGCTGGCTGCAGAGTCCAGAAGGGCCAACTGGACAAGAAGATGAAATTTCGACTCGTTCGAGGGAAAGAGGTTCTTTGGGAAGGGGCATTGACTGCACTAAAACATCACAAAGATGATGTGCAAGTTGTGAAGACAGGCATGGAGTGCGGTCTGTCTTTGGACAAAGCTATTGACTTTAAAGCTGGAGATGAAATAATCTGTTATGAGGAAACAGAGAAGCAGCAGAGAATATCTTGGGATCCAGGGTTTTAAGAGACTGCCCctgtcagtgacatcaccagcaTGTGGTGTTCAAAATAGTTATTCTGTCAGGTTATTATGTCCATATAAGGATGTGACTGGCAAGTTGTGTAAATTATTccatgattaaaataaatgggtttaaaaaaagtggGAAAGGTATCTAGTAGCAATCTAAttcatttag

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K02519 infB, MTIF2; translation initiation factor IF-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122848 lncRNA downstream 2360 23572589 ~ 23575679 (-) True G103820
TU122845 lncRNA downstream 64711 23512157 ~ 23513328 (-) True G103817
TU122741 lncRNA downstream 247938 23329676 ~ 23330101 (-) True G103727
TU122733 lncRNA downstream 254627 23321663 ~ 23323412 (-) True G103719
TU122712 lncRNA downstream 302757 23270144 ~ 23275282 (-) True G103702
TU123026 lncRNA upstream 66608 23648684 ~ 23699689 (-) False rnpepl1
TU123014 lncRNA upstream 150794 23732870 ~ 23738739 (-) True rpl35a
TU123018 lncRNA upstream 150794 23732870 ~ 23738739 (-) False rpl35a
TU123411 lncRNA upstream 832824 24414900 ~ 24464578 (-) True G104291
TU123423 lncRNA upstream 898285 24480361 ~ 24484072 (-) False sipa1l3
XM_026914466.2 mRNA downstream 7017 23559123 ~ 23571022 (-) True eif2a
XM_026913335.2 mRNA downstream 20505 23547434 ~ 23557534 (-) True dcun1d5
XM_034304937.1 mRNA downstream 23288 23547392 ~ 23554751 (-) False dcun1d5
XM_026913998.2 mRNA downstream 42359 23513393 ~ 23535680 (-) True capn5a
XM_034305526.1 mRNA downstream 79533 23455693 ~ 23498506 (-) True myo7aa
XM_026914176.2 mRNA upstream 12433 23594509 ~ 23610448 (-) False mmp23bb
XM_026913881.2 mRNA upstream 33295 23615371 ~ 23632367 (-) True ap2m1b
XM_026913557.2 mRNA upstream 52001 23634077 ~ 23678458 (-) True LOC113526489
XM_026913558.2 mRNA upstream 102042 23684118 ~ 23699707 (-) True rnpepl1
XM_026913914.2 mRNA upstream 119708 23701784 ~ 23731415 (-) True abcc5
XR_004578321.1 other downstream 1271270 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 2564939 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 2611129 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 3597780 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 4227096 19350762 ~ 19350943 (-) True LOC113527011
XR_004578330.1 other upstream 8869 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 1041440 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 1170536 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 1803249 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 1803249 25385325 ~ 25548928 (-) True si:cabz01090165.1

Expression Profile