RNA id: XM_026914034.2


Basic Information

Item Value
RNA id XM_026914034.2
length 1183
RNA type mRNA
GC content 0.42
exon number 6
gene id tnni1c
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30355521 ~ 30359530 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtttgttttcatgtgcAGGATGTTCCCAAACCGATGCCCCCTCGGGCGAACGTTAAGcccaAGTCTAAGATCTCAGCCTCGAGGAAACTCTCGCTGAAGatcctGCTCCTGCAGAGGGCGATGGAGGACTTGGAGCAGGAGAAAGCGACGCGTGATGAGGAGAAGGTGCGCTACCTGGGCGAGAAACTCCCACCTCTGCAGATTTCCGGTCTCTCCATGGACGATCTCCAGAAACTGTGTCGACAGCTTCACGCTAAAATCGACGTGGTGGATGAAGAGAGATACGACTTTGAAGCAAAACTCAACAAGAACAATAAAGAAattcACGAGTTGAAGCTGAAGGTGCAGGATCTCGGAGGGAAATTTAAGAAACCGGCTCTGAGGAAGGTTCGTGTGTCGgctgatgagatgatgagagcTTTACTCGGCTCCAAACACAAAGGCTCCATGGACCTGAGAGCCAACCTGAAGTCCGTCAAGAAGGAGGACATTAAACAGGAgaaggtgctgaCCACCGAGGTGGGAGACTGGCGTAAGAATGTGGAGGCCATGTCAGGGATGGAGGGCAGGAAGAAGATGTTTGATGCAGCTGGTGGAGGACAGTGAACAGGACgttactgtatataacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaacactgAGAACAAATACTGAAAGTGAGATTTATTAGTTACATCAGTTACATTGTTGCAGTTGTTACATAgtaacatttattacattattacatagtaatatttattacattgttaCATTGTTACATCAGTTACGTTGTTGCAGTTGTTACATTGTAACATTGTTACATCAGTTACGTTGTTGCAGTTGTTACATAGCAACATTTATTACATTGTAACATTGTTACATCAGTTATGTTGTTGCAGTTGTTACATAGCaacatttattacattgttaCATCAGGTACATTGTTACAGTTGTTACATGGTAATATTTACTGCATTGTCACAATGTTATATTTGTTACATTGTTACAGTAGAGTGTTACGTGGTCTATGTTACTATTCACCACGCcgtgtcatcatcatcatcatcatcatcatcatcatcatcatcatcatctcactaATGAACCTCTTCAATTTTTATGGCTGGATTTTATgctaaaatacaaacattttttaaatta

Function

GO:

id name namespace
GO:0005861 troponin complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127060 lncRNA downstream 43675 30309847 ~ 30311846 (-) True G107510
TU126731 lncRNA downstream 432328 29922742 ~ 29923193 (-) True G107217
TU126723 lncRNA downstream 510664 29765376 ~ 29844857 (-) True G107210
TU126702 lncRNA downstream 631144 29724114 ~ 29724377 (-) True G107191
TU126704 lncRNA downstream 647621 29680263 ~ 29707900 (-) True G107193
TU127084 lncRNA upstream 4097 30363627 ~ 30391458 (-) True G107532
TU127085 lncRNA upstream 8808 30368338 ~ 30369188 (-) True G107533
TU127088 lncRNA upstream 9357 30368887 ~ 30406964 (-) True G107536
TU127127 lncRNA upstream 61722 30421252 ~ 30423338 (-) True G107574
TU127103 lncRNA upstream 83993 30443523 ~ 30469903 (-) True G107550
XM_026914460.2 mRNA downstream 99437 30137011 ~ 30256084 (-) False tspan4a
XM_026914459.2 mRNA downstream 133163 30137011 ~ 30222358 (-) True tspan4a
XM_026913330.2 mRNA downstream 291155 29971467 ~ 30064366 (-) True luzp2
XM_026913659.2 mRNA downstream 588774 29728085 ~ 29766747 (-) True lrch3
XM_034304953.1 mRNA upstream 67650 30427180 ~ 30433055 (-) True miox
XM_026913453.2 mRNA upstream 77499 30437029 ~ 30444319 (-) True adm2b
XM_026913573.2 mRNA upstream 93177 30452707 ~ 30464074 (-) True LOC113526499
XM_034305125.1 mRNA upstream 110430 30469960 ~ 30489913 (-) False ppp6r2b
XM_034305127.1 mRNA upstream 110430 30469960 ~ 30489913 (-) True ppp6r2b
TU127077 other downstream 10645 30343531 ~ 30344876 (-) True G107525
TU126682 other downstream 641529 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3198381 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 3747192 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 4114516 26239330 ~ 26241005 (-) True G105376
TU127397 other upstream 370428 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 457049 30816579 ~ 30819614 (-) True G107803

Expression Profile