RNA id: XM_026914044.2


Basic Information

Item Value
RNA id XM_026914044.2
length 4383
RNA type mRNA
GC content 0.47
exon number 16
gene id large2
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24135378 ~ 24269595 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAACAGAGAGCTAGAGACACTGAATACACAGCCTGTAACAGAGAACTGAGCtaaggagcagagagagagagagaaagagagagagagagaaagagagagagaaggaagcgATTTAGGAGTGTTTATTTCTCAGCAATCTCTCCAGCTGTGCTTTGTATGAATGAGTGTCTCTGGATGTGCTGTGTGCATGGACATGGCACATGACACTGGGGCTCCGATTGATCCCTTCCATGCCTGATCAACAGCACTTTTATTAACCTGGAACTTTACCCTTTCAAGAggtcactctttctctcacctcTTGCTTCTGAggtgcagacagagagagagagagagagagagagagagagagagagagagattgagtgtgtgtgtgtgtgtgtgtgcaggatctCTGATTGAGAGAAAAGCTCCATCTTCATCCTCACTTCATGATCCAGTAACATCTGGAGAAAGACACCTGTCCTCTCAACATGTGGATCtagcagcatttttttaagGGATTGCTTCTGCTTTGGATTGCTTTCATTGCCTTGAATCAGAGTTTTCAGTGGATACTGAGGTTTCAAATACCCAAGGGGAGGATTTTGTTCCTAAACTTTCACTTGGGAGAAGAAGACTTCTGATGAGAAGATGCTGCAGGGAAGCAGCGTGAGGCCGAGTCCCACCTGAAGCCCatcctcctcctgttcctccacCTGCCGCCATCCCATGATGCACTGCCCGTGCCGAGGGAGGCTGAAGCTGCTGCTGGCGTCTCTGAGCTTCATCATCCTGCTCACGTGGCTCTACCTGCTGGCGGGCAACCTGGAGAATGGCCGCTCCTTGCTCCTTGCTCCATGTCTTCTGGAGTCCACGGAGGCGCGCTTCCTCGAGCGGGAGGTGCTCGCGTCTCGGGTTCGACAGGTGGAGGAAGAGAACCGGCAAATCCGCCTCCAACTCAGTCAATCCCAGGGCCAGACTGAAGGTAACTATGGCAACCAGCAGTGGGTGGCATCAGCAGATACGGGAGCAGAGGATGTGGAGAACACGGCGGAGGAACGGGCCAATCACAGCGAGTGTGTCCGCTCACCTACTGCAGAGAAGTGTGAGCTGATTCAcgtggcatgtgtgtgtgcgggtcACAACGCCAGCCGAGACGTGGTCACCCTGGTCAAGTCCATCTTATTCCACAGGAGAAATCCTTTGCATTTTCACTTCATAACCGACACAGTGGCCAATCAGATCCTCAGCACGTTGTTCCAGTCGTGGATGGTACCGTCAGTGCAAGTCAGCTTCTATGATGCTGATGAACTGAAGCCGGAGGTTTCATGGATACCCAACAAACACTATTCAGGAATTTATGGCCTGATGAAACTCACGCTCACCAAAGCGCTGCCCTCTGACCTCTCGAAAGTCATTGTGCTCGATACGGACATCACTTTTGCCACTGATATTGCTGAGCTATGGGCCATCTTCAGAAAGTTCACAGCAAAGCAAGTGATTGGACTCGTAGAGAACCAGAGTGACTGGTACTTGGGGAACCTGTGGAAGAACCACAAACCCTGGCCTGCTCTGGGACGTGGCTTCAACACAGGGGTAATCCTGCTCTATCTGGAGCGCTTACGGAAGCTCGGGTGGGAACAGATGTGGAGGTtaacagcagagagagagctaATGAGCATGCTTTCCACTTCCCTCGCTGATCAGgatATTTTCAATGCAATCATAAAACAGAACCCGGTTCTTGTGCACCAGTTGCCATGCTTCTGGAACGTACAGTTATCAGACCACACTCGCTCTGAGCAATGCTACACAGAGGTGTCCGATCTTAAGGTGATTCACTGGAATTCTCCAAAAAAACTGCGAGTAAAAAACAAGCATGTGGAATTTTTCCGGAATCTTTACTTGACCTTCCTGGAGTATGATGGGAACCTTCTCCGGCGAGAACTCTTCGGGTGTCCGAGTCAGGCCACCTCTGAGAGCACACGGCTTCAGAAAGCACTAGAGGAGCTGGACGAGGATGACCAGTGCTATGATTTCCGGCGTGAGCGAATCATGGTGCACCGTGTACACCTTTATTTCCTGGAGTATGAATACACATCGACCGAGGATGATACGGACGTCACTCTGGTGGCCCAGCTGTCAATGGACAGaCTGCAGATGCTGGAGGCCATCTGTAAACACTGGGAGGGACCCATCAGTTTGGCACTCTATATGTCGGATGCCGAGGCTCAGCAGTTCTTACGCTATGCTCAAGCTTCAGAGGTCCTCAAAAACCGCAAGAACGTGGGATACCACATTGTCTACAAAGAGGGCCAGTTCTACCCTGTTAACATGGTTCGCAATGTGGCTCTCCGTAATGCCAAAACCCCTTACGTCTTTCTGACCGACATAGATTTCCTCCCTATGTACGGACTCTATGATTACCTCAGAAAATCCATTGTCCAGTTGGACATGGCCAACACCAAAAAGGCTCTGGTAGTGCCAGCCTTCGAGACTCTGAGATATCGCCTCTCCTTTCCGAAATCCAAAGCCGAACTGCTATCCATGCTAGACATGGGGACTCTCTACACCTTCAGGTACCATGTGTGGACCAAGGGTCACGCACCAACCAACTACGCCAAATGGAGGACTGCCACTACACCTTACAAGGTGGAGTGGGAGGCAGACTTTGAGCCCTACGTGGTGGTCAGGCGGGATTGCCCTGAGTATGACCAGAGATTTGTGGGCTTTGGCTGGAACAAAGTCTCCCACATCATGGAGCTGGATGCACTGGAGTATGACCTGATGGTGTTACCAAATGCCTTCATGATCCACATGCCCCATGCGCCCAGTTTCGACATTTCAAAGTTTCGCTCCAGTCCGAGTTACCGGTTCTGCTTGACGACTTTGAAGGAAGAGTTCCACCAAGATCTCTCCAGAAAGTATGGTGCTGCTGCTCTGAAGTACCTCACTGCTCAGAGGAACATTTGAATTCAGCCCTTAATGTATGTCCATGCACACTGGGGACACCTCTAATCTGTTCCTGGAGGCCTATCGGCCGCATGCTGCTCTCAGACATGTTGATGTGTCCAATGTGTGTCAAGGTACTGAACTGTCCTTTCACATGTCTGCATTTCTATTAAATCTGCTGGACGCAGATCAGACTGACTGGAGCTTTAAACCTCGTTTTTGAATATAGCTGTCACATTCAAGACTTAAAACAGCGATGTCAGCACTACCCCAAGCTATGTCAAAATTAAGACTGAGTGAAACCCAAAACAAGATGGCTAATACCTAACCAACTGCTGGTTAGCAGTGTTAATTGAAGTCTATTGTATGTCTGTTCTTAAAGGTCTGGCAAGCTACTTGCTTAAAAGCATAAGAGATCTTGATCAAGGTTTTTTTTGACAATCAGGGCTTTCTCTCGACTAAATGTAAACAGCTTATTCGGGGAGTTAAGCAGAGTTAGAGAAAAGACGTGAACTTTTTAAAGCCTCTTTTATTTTGGAAAGGGCATCACAACTGGAGGAATAGATTAAGCCTTATGAATCCCTCactatttaagatatttatgctttttctttctttttaaatgatatgGCCAATGAACTTTGGGTGTTGACTTACAATATATGTTTtgattataagattataagaaCGAAAATAAgtcatattattttttcatttctacaaACGGAGTACCATAGGTGACTGAGAGAGTGAATGCTTGATGGAGAAACATAACTTGTCTAGTGAGGATATTGGCTTATTTGCTTTCCATTAGGCATGACAGGTTGTCTGGACATGTGTGTTATTGCTGCATTTAGGACTGTCACTTAACTGTCACATGTTTTGGCATGCATATTCCATATCCAGCACTGTAGCATCTCATCAGCTTTTATCTCAAATTCACTCTGACCACTAtacatttaacaaaatgtttaaataagaaTATATCTATCGTATGAGCGATCCAGACCAGGGACCATCAAATGACCCCTCAGCTGTtcaattatattgtattatttactaATGGTCATTGCTAAAATCCTGGAAAACTACTGTATGTGTCAAACTGtaatacaattacaaaaaagagcggaacaaaaaaatgattgtGGAAACCCTATGAAAGTGGTACTAACTAATTGGTGGGGAAAATGTAGGAGGTACATCACTGGCTCATTACAGTTCATCTATCTCGCATCGTTCACCCTCCACTACTGCAAACACTGCAGTACACGTTTGCAGTACATGCCTGTGCCTTTGCTGTATTGTGAAACTGGATATTGATTGTACTACTGTACATGTCAGCGGGGCCTGCAAGAGGTACTCTATTTATTATTGACTTAAATCAATCATATTTTTCTATGTAGGGGTTAAgtgctttaaataaatttgcCCTTTTTCTAAGACA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123014 lncRNA downstream 396639 23732870 ~ 23738739 (-) True rpl35a
TU123018 lncRNA downstream 396639 23732870 ~ 23738739 (-) False rpl35a
TU123026 lncRNA downstream 435689 23648684 ~ 23699689 (-) False rnpepl1
TU122848 lncRNA downstream 559699 23572589 ~ 23575679 (-) True G103820
TU122845 lncRNA downstream 622050 23512157 ~ 23513328 (-) True G103817
TU123411 lncRNA upstream 201928 24414900 ~ 24464578 (-) True G104291
TU123423 lncRNA upstream 267389 24480361 ~ 24484072 (-) False sipa1l3
TU123422 lncRNA upstream 267419 24480391 ~ 24484072 (-) False sipa1l3
TU123452 lncRNA upstream 320765 24533737 ~ 24534419 (-) True G104320
TU123618 lncRNA upstream 418686 24631658 ~ 24661348 (-) False ttc9b
XM_034304981.1 mRNA downstream 161190 23932898 ~ 23974188 (-) True cngb1a
XM_026913623.2 mRNA downstream 222115 23877707 ~ 23913263 (-) True kifc3
XM_026913870.2 mRNA upstream 136627 24349599 ~ 24367259 (-) True arfgap2
XM_026913871.2 mRNA upstream 136627 24349599 ~ 24367258 (-) False arfgap2
XM_034305056.1 mRNA upstream 214615 24427587 ~ 24433267 (-) True tmem123
XM_026914334.2 mRNA upstream 214615 24427587 ~ 24433245 (-) False tmem123
XM_034305055.1 mRNA upstream 223318 24436290 ~ 24441614 (-) False tbcb
XR_004578330.1 other downstream 524930 23590945 ~ 23610448 (-) True mmp23bb
XR_004578321.1 other downstream 1828609 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 3122278 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 3168468 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 4155119 19980069 ~ 19980259 (-) True LOC113527007
TU123617 other upstream 410544 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 539640 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 1172353 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 1172353 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other upstream 1172353 25385325 ~ 25485121 (-) False si:cabz01090165.1

Expression Profile