RNA id: XM_026914213.2


Basic Information

Item Value
RNA id XM_026914213.2
length 2297
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC113526825
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23158732 ~ 23162309 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCCTTCACAAGAGCAAGGGAATGAGAGGTTCAACCTGAGGAAttgtgagaaaagagaaagaaaccacGATAGGATTATTTCTCCTGGATTGATCATTACACCAactTCCACGAATCAAGATGGCTGCcttaaacatttccagtttcaTCAACAGCAGTTCTCAATACCACTGCAAGTTTAATGAGGACTTCAAGTACATCTTACTTCCTGTCAGCTATGGGGTGGTGTTTATTGTTGGGCTGGTGCTCAACGTCATTGCATTGTATTCCATCTTGTTCCGGATCAAACACTGGAGCCCCAACACCATCTACATGCTCAACCTGAATGTGTGTGACACACTCTATATCCTCACACTACCCTTTCTGATCTACTACTACGCTGACAAGAATGACTGGCCTTTCACTGAACCTTTCTGCAAACTTATACGCTTTCTTTTCTATACCAATCTCTATGGTAGTATCCTTTTTCTCAGCTGCATCAGCATCCATCGCTTCCTTGGCATTTGCCACCCGGTGCAATCAATGCAGTGGGTTAATGCCCGACGTGCCCGTTATGTCTCAGTCCTTGTTTGGGTAATTGTTCTCATCTTTCAGGCACCGGTGCTCTACTTTTCCCGAACCACCAATCAAGTCTGCCATGACACCACATCTCAGGACCTCTTTAATTACTTTATGGTCTATAGCTCGGCCATTTCGGTCATTTTGTTTGTAATACCCTTTGCATTAGTGCTAGTTTGCAATGGTCTGATGGTGCGAAAACTTCTAGAGCCCACCACCATAGGAGGTGCCACGTCCCAGCGCTCCAAGCAAAAGTCAGTGAAGATGATTGTCATAGTGCTGCTGGTCTTCATACTCTGCTTTCTGCCCTTCCACCTCACACGGAGCCTGTATTACAGTTTTCGATACGTAAAAGTGAACTGTACACTGTTGGAAGGTTCTAACATAGCTTACAAGGTCACAAGGCCACTAGCCAGTGCAAACAGCTGTATTGACCCCATCCTCTACTTCATGGCAGGCCAGGGTTTCCGACAGAGCCTAAACAAGAAACACAGACAATCtcagagaaaggaggagagcAAGTGCCTCTCCACCTCTTTATGAACAAATAATTTGAAATATGAAtctgaaacacaaacaagtgCAATGGATTAAAGAAAGTTATGAAGTGCATAGGAATGCTTTCATGACTGCTGAGCTAAATGGGTGCTTACTAAACTTGGGTGTACTGAACGCAgacatgctttttaaatatctcGTCACAAGGGGGAACAGGAGACAAACACTTATCTAAAGCAACTCATCTATAGCTCTTTGAGAATACAGGGACACGAGAtacaatgaaaataatttaaaatatggcTTTATTTCTAATAATTCCCTGctttagatttttctttttcttattaagATAATGAGAAGTAAGATTTTAGGAAATGTTTGGTAAGCCATGAGTCTCcatctttatattatttaccAGCAATAGGTAGTTAAACTAATTTATGCTAAATCCATGTAAGACTTCTATACGTATGTAGAGAAGCCAAGAAGGTCAAGCAAGCTCAGGGACATGATAAACATAGAAGGAAAATAGATGGAATAtaatattttagatttagatttaatggCTGTAATGGTAAATCTGTTGTTTAGCGCTAGATACCGAAAGAGTCACTGTGTTGAGCACTTGATCAGGGCTCTTAACCCTCATGCATTCTGTTCTTggactgtatattttacatttgtaaaatgCATTGGATAAAGGAAatcttaaatatgtaaatattgaaatgtattaaaaaggTAAAGCTTAAACAGAAAGCTTTGGATATCCTGAGCTTGTCTGGAGACAAGACTGGAAACAATCAGGAAACCCTTTTTggtgagagattttttttaatattcatttttcttttcatagaGTGTGCATCCATATTGGGGGTTATTAAGTGTTTAAGGGATATGGAAGTGTTTAAGGGATATTGAAAATCTTTTTGAccattattacaaaataatatagGCCTAAAGTGTTCTTTATAACTCAAAAGGCAAGGTTTTATTGCATGTAGTTGAGGATTGCTGACAAGAAAACCTGATTAAGATGATTGCACACAACTTTACTATGATAAACCTGTTACTTTCATTTTTCTGGTCATTTTCCCGATTGTCCATTAATGTATTCAgctgtcaaattaataaaattgtgttGACATTGTGGTTAATTCATGTTCTCAAAATGTAAAGTGCCCATGGAGCACTATGGCAGCATTGtgcctaataaataaatacatttcatcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122418 lncRNA downstream 222686 22928169 ~ 22936046 (-) True G103436
TU122387 lncRNA downstream 275579 22865924 ~ 22883153 (-) True G103410
TU122186 lncRNA downstream 822029 22335946 ~ 22336703 (-) True G103235
TU122108 lncRNA downstream 930016 22228385 ~ 22228716 (-) True G103161
TU122106 lncRNA downstream 930869 22227628 ~ 22227863 (-) True G103159
TU122573 lncRNA upstream 56713 23219022 ~ 23259188 (-) True G103576
TU122600 lncRNA upstream 100498 23262807 ~ 23263083 (-) True G103600
TU122712 lncRNA upstream 107835 23270144 ~ 23275282 (-) True G103702
TU122733 lncRNA upstream 159354 23321663 ~ 23323412 (-) True G103719
TU122741 lncRNA upstream 167367 23329676 ~ 23330101 (-) True G103727
XM_026914311.2 mRNA downstream 5083 23150108 ~ 23153649 (-) True LOC113526884
XM_026913500.2 mRNA downstream 817291 22336760 ~ 22341441 (-) True slitrk3a
XM_034305154.1 mRNA downstream 851963 22231448 ~ 22306769 (-) True si
XM_026913317.2 mRNA downstream 1494405 21641638 ~ 21664327 (-) True serpini1
XM_026913538.2 mRNA downstream 1524175 21623853 ~ 21634557 (-) False LOC113526476
XM_026914031.2 mRNA upstream 135046 23297355 ~ 23299010 (-) True aamdc
XM_026914029.2 mRNA upstream 135055 23297364 ~ 23298984 (-) False aamdc
XM_026913338.2 mRNA upstream 171868 23334177 ~ 23340381 (-) True aqp11
XM_034305528.1 mRNA upstream 293384 23455693 ~ 23504297 (-) False myo7aa
XM_034305527.1 mRNA upstream 293384 23455693 ~ 23498506 (-) False myo7aa
XR_004578321.1 other downstream 851963 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 2145632 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 2191822 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 3178473 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 3807789 19350762 ~ 19350943 (-) True LOC113527011
XR_004578330.1 other upstream 428636 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 1461207 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 1590303 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 2223016 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 2223016 25385325 ~ 25548928 (-) True si:cabz01090165.1

Expression Profile