RNA id: XM_026914215.2


Basic Information

Item Value
RNA id XM_026914215.2
length 2367
RNA type mRNA
GC content 0.47
exon number 8
gene id cd276
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26194050 ~ 26292607 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctgctttGGATCCGTTTTATTGTGAGTGACAAAGCGAGCGAATGAACAGGGAGCGGTTGAATTTTGGCTGTTCTCTGAATAAAACCGTAATAAAGCATACATTAAGCTGAAACTCAGAAACGACCtggttttatttgtgtaaagaCTGAAACTCAGCCTGAGGTGAAAAAGGAATGAAGCAAGTAAGCTAGCTAACTCTGATGTTTATCCACCCCACACTGCCAGGCTGGACTCCGACTGCGTGCCGTGATTAAAGAAGCTTCCCTGCTgttacactcactcactcacacacacacacacacacacacacacactcctttccTGGATCACCATGCTGGCCCTCCTGTTGACTGCGCTGCTGGCTGTACACTCTATCGctcTGGAAGTGCACGTCCCTGATTTCCCAGTGGTGGTGCTTTACGGGACAGACACCATCCTCAACTGCACGTTCTTGGGGGCCAAGAACTTTAACCTTTCCGAGCTGAGCGTATTCTGGCAGCTGGCTGACACTCAGAGAAGCGTGCACGCTTACTTTGACAAGCAGGACCGGTTCATTGATCAGGACGAGCGGTTCGCTAACAGGACCAGCCTGTTTCCTGCAGAGTTAGCGTCTGGTAACGCATCGCTGCTCCTGAGGAGAGTCCGAGTGGCAGACGAGGGCAGCTACACATGCTTCGTTAAAGTGGACACCTACAGCAAGGATTCCATGTTCATGCAGGTGGCAGCCCCGTACTCCAAACCCTCAGTAACCTGGGAAACCGACGCCAACCCCAAGCCAGGTGACGTAGTAGCACTGACCTGCGTGGCATACGGCGGGTACCCCGAGGCTCAGGTGCTGTGGCAGGACGGGAGCGGGCAAAACCTGACGGAGAACGTCACCGTCTCACCTGTAGCCAACGAGCAGGGTCTTTTCACCATCAGGAGCGTCTTGACAGTGATCCTCGAACCGAACAGCACCTATAGCTGCAGACTGACCAATCCGCTTCTAGGGGACGAGGGCCACGCCTCTGTCACCATCACGGcccAGGCCCCGGTTTTTCCTCAAGTGGCTTTGTGGGTAACGATTGGGCTGGCGGTCTGTTTGCTTGGTCTCCTCATCGCCTTGGCTGCCGTCTGCCACAGGAAAATCAAAGAGAGCTGTGAAGAGATGAGAGCAGAGGAAGAAGCCAAAGAACTTGAGGAAGCCAAAGAACTTGAAGAATCCAAGACAGCTGCAACACCTCTAAAGAGCTAAAGGCAAAGAGCACAGGGTGAAACTACACATGAAGCATGGAGTCTCACATTAACCTTCAGTGCAACATGGCGTTCAACAAGAGGCACATtcgattttcacacacacacacacacacacacacacacacacacaggcacacacttTCAGTCTGTACAGGGCCGTTTTGGTGTTGCAAATATCTGTGCAACTTCTATTGCTTAAAATCAGAAAGTAGCAATTAACAATtgatatgtattttaaaatttttggaTTTTGTGCATTGACAAAGAGAGCGAATGCTGTTTGCCTTTTTCCTGGTTCTAGAGTGATGTTAAATATCAAACCCATCACTTGCTGATTTTTCTCCGCTTTCATTTCTGTTAACGGGTTAAGTTCTTGTTTTATAatctgactgtttttccaattttcttAAACAGCACGAATAGAAATAACCTCAGACATTCTAGTAGCCTAGCCTCATTTCAACAGCATCATTGGCTTCCTGTCTTCATCACAAAGactaaacagaaaagctgtttgAAGGCCACTGGCTCTGACAAGCTCCCAGCTCCACCACTGACACCAGCTCCCTCCACTCTGCATGCAGAGCCTTGCCTCATGTTCCACCTCACACCTAATGGAAAGTGAAGAGCTTAAGAGCAGAACCAGCAAGGAAGCTGCCATCAATGTATCCAGGATAgtcagtctctctttctttccctcgtCTTCTCCACCAGCGCACCAGCTCAGACTAATTAAGGCCTGCCCATGAACCAACATGTACCTGTCAGCATGTAGCTGTTTCTGCAAACTCAATGACTTGGGGGAGAAATTTGGTTGAATTCCAGTTAAGCTTGTACAAATTGCAAGTGGTTCACAGGACACACCCAGGTTTCTCTTTGTCCTTACAGTATTATGGTGAGAAATGGTTTTAATGATTACACAGTCAACTGTGATACTGTGAGGGGGAATCTGTTATGAATCTTGTAtgctgggctttttttttaaacaatggttCTTGACTTGGAACATGTTCAGTGCCAAATAGATTGATATGTTTTTCCACAAATGGATTAATTGTGCCAGTCAGTTATTATGAACatgctttaaataataaaatgatttgtcATTAAAATCTCATCTGCTACTGTGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124447 lncRNA downstream 106355 26087480 ~ 26087695 (-) True G105219
TU124309 lncRNA downstream 358012 25833279 ~ 25836038 (-) True G105092
TU123932 lncRNA downstream 948806 25243472 ~ 25245244 (-) True G104750
TU123936 lncRNA downstream 950033 25243472 ~ 25244017 (-) False G104750
TU123929 lncRNA downstream 952280 25239110 ~ 25241770 (-) True G104747
TU124618 lncRNA upstream 27425 26320032 ~ 26320770 (-) True G105379
TU124743 lncRNA upstream 289687 26582294 ~ 26608329 (-) False LOC113526510
XR_004578318.1 lncRNA upstream 304827 26597434 ~ 26608339 (-) False LOC113526510
XR_004578319.1 lncRNA upstream 305409 26598016 ~ 26608327 (-) False LOC113526510
XR_004578317.1 lncRNA upstream 305410 26598017 ~ 26608327 (-) True LOC113526510
XM_026913764.2 mRNA downstream 288710 25890299 ~ 25905340 (-) True loxl1
XM_034305190.1 mRNA downstream 323779 25839470 ~ 25870271 (-) True LOC113526366
XM_026913264.2 mRNA downstream 645122 25385325 ~ 25548928 (-) False si:cabz01090165.1
XM_026913337.2 mRNA downstream 847086 25344225 ~ 25346964 (-) True LOC113526369
XM_026913666.2 mRNA downstream 874368 25304736 ~ 25319682 (-) False LOC113526534
XM_026913597.2 mRNA upstream 31774 26324381 ~ 26464945 (-) False zgc:158464
XM_026913596.2 mRNA upstream 31774 26324381 ~ 26464944 (-) True zgc:158464
XM_026913600.2 mRNA upstream 31774 26324381 ~ 26464943 (-) False zgc:158464
XM_026913601.2 mRNA upstream 31774 26324381 ~ 26464938 (-) False zgc:158464
XM_026913357.2 mRNA upstream 222914 26515521 ~ 26532135 (-) True ube2q1
XR_003402763.2 other downstream 645122 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other downstream 645122 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other downstream 708929 25385325 ~ 25485121 (-) False si:cabz01090165.1
XR_003402792.2 other downstream 1431269 24752612 ~ 24762781 (-) False clasrp
TU123617 other downstream 1482682 24623516 ~ 24711368 (-) True G104473
TU124747 other upstream 276478 26569085 ~ 26608329 (-) False LOC113526510
TU125182 other upstream 859705 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU126682 other upstream 3409545 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 4050924 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 4437351 30729958 ~ 30732031 (-) False bbs10

Expression Profile