RNA id: XM_026914279.2


Basic Information

Item Value
RNA id XM_026914279.2
length 2275
RNA type mRNA
GC content 0.36
exon number 4
gene id LOC113526860
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27298985 ~ 27303730 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAATCCAGTAACAGCAGTGAAGGGGCTCACTTCATCTTGTACTGTCAAGTGACAATGGCTAGAACATCATGGATCATCTTGGACAGTTGAAATGCAACTGAACATTTTTATACAAGCCATTTTACCTGCATAAATCTGCAGCTGTCTTACAGAATAATGGGACAATTgcagagcacagagaacagTGAAGTAGCTCTTTCTCAGATCCAGGAGATGTACAAGAAGTTTGCAAATGAGTGCCCAAGTGGAAACTTGCACCTGCATGAATTCAAACGGATCTTTGGGGTTACGTGCGACTCATCAGTTGAAGAATCTGCCTACATGGACAATTTGTTTAGATCGTTTGATGCTAATCATGATAACACGATAGATTTCATGGAGTATGTGGCTGCACTGCATCTGGTCCTTCGTGGCAAGCTTGAGGATAAACTGAAGTGGTCTTTCAAAGTTTATGACAGGGATGGAAATGGACGACTGGACAAACAGGAGGTGGCACATGTAATTAAGATCATCCACAAATTGAGAAACTATGAGAACCCTTCAGACTCTGAAGAGCTCAATCCAGATCAGATAAGTGACAGGATCTTTGAGCTTGTTGATCTAAATCATGATGGTCAGATTTCATTGGAGGAGTTTATGGAGGGAGCACAGAGAGACACGTGGGTGATGGAGCAGCTCAGGCTCGACCTGCGGCCCACTCGCTGGttcatcaaacaccagaataaaaattcatgaagactaccaaataaacagaaactcTGACTTAAGGAAAAGTATAAGCTTTCCTAAAGTAATCTTCTTTAACAATGTATGTAACCATGAAGATTTCTTAATAACTCCTAACTCcttttgtgaaaaataatgtgcccatttttttcaatgtttatttatttaagtaatttttCAGATTGTTATGACATGTTTCTGGTTTCTGGACATATTTTGCTTTcaagaaatttaatttatatatgtgtgtcaaagaaaaatgtgtctgtaTAACAGCATTTAACGTTAAAGTAAAAcaacttatttatatttactcaaatatataaaatgagtgAATTGATGAATTGAAAGTAAACTTGAATAAtgcatacaaatacaaacacattcttaCAATTAAACACTAAGAACAATGTAACAATGTTTGACTATAATAGCAAAATAAGAATttttgaattaaatatttttcagtggCTTGTAATTCATTTTTTGTACATGTAACTCAAACAATACAGTTAACACTATGCCTTATTTGATTTATGTGTATGGTTGTTGacagttttctgttttattgaatgacatttcagttatttaaatttctgtatttttgacCTTAGCCTCGAAAGTgttacattctttctttctttctttctttctagctGAAAGTGGCGATATGTGGGATCCAATCTCACATTTTGTAATTATTGCTCCCAGATGAGACACAAACATACTGTTGAAGTTTTGTAACATTTGCTCAATGCTAACCCTGTCAGATatctgctgaaatctgattggctgatgatggatttttttcagTAACCTGGTCATCATTAGATATAGAATTACACCTTAGCATACCGATACAGTCTACCAAATTCCAATCTGATCCTATCCTGTGAAACTGTTGTCCGAATTTAACTCCGCCTCCTATAGTTGACCACGCCACAAACTTCGGATATGTCCTCAGACCCTTGTTCTTAACATGCTGCTCAAATTTTGTGTGAATCCATGAAGCCAGTTTTGAGATACAGCTGTTTGCGCAAAGGAAACACCGCCTCACTCAGGTTGATTGCATGTGACGGCCATATTGTCAATAGGCTAATTGAATTTACTGAAGAACATGTATATGAATAAACTGAAAAGAAATATCCTTGTATCTTTGTGTATGGCTCCCAATAGGCCTAATGCCTGTCCATGTCCATATACTACTCCTGCATGATTTCTAACACTTGAGCCACTCACATTAGTGGGGTTTTGGGTGAAGGAGCTTAAAGGCTAAGAGAATTAACACTGTGAGACAGTGGTCAAGAGCAAGTAATCTTCTCATGTAAACCAGAAGCTACAGAAGCTGAAGTATGTGCTTTACAATGTGCTATAGAATGTgctgtagaagtgtgtgttttggccCCCAGCCTCTGATTAAAACCTCTCTGTATCATGGATTGTCCAATAGTCCAGATTTAGCTTTATGCAATAAAGGCAAATATATAAACTAGATTCTAAGAAATcctaataaatgaaataattctaACAAAACCAAACCAGTATGTAT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402778.1 lncRNA downstream 110193 27188342 ~ 27188792 (-) True LOC113526487
XR_004578372.1 lncRNA downstream 154111 27143707 ~ 27144874 (-) True LOC117597606
TU125118 lncRNA downstream 169813 27123277 ~ 27129172 (-) True G105842
TU125109 lncRNA downstream 191414 27105368 ~ 27107571 (-) True G105835
TU124929 lncRNA downstream 423151 26875595 ~ 26875834 (-) True G105666
TU125590 lncRNA upstream 475402 27779132 ~ 27781800 (-) True G106193
TU125592 lncRNA upstream 558110 27861840 ~ 27905029 (-) True G106195
TU125660 lncRNA upstream 641086 27944816 ~ 27945033 (-) True G106258
TU125661 lncRNA upstream 649788 27953518 ~ 27953990 (-) True G106259
TU125662 lncRNA upstream 650534 27954264 ~ 27954479 (-) True G106260
XM_034305032.1 mRNA downstream 1814 27203767 ~ 27297171 (-) False LOC113526686
XM_034305048.1 mRNA downstream 4353 27203767 ~ 27294632 (-) False LOC113526686
XM_034305046.1 mRNA downstream 4353 27203767 ~ 27294632 (-) False LOC113526686
XM_034305037.1 mRNA downstream 4353 27203767 ~ 27294632 (-) False LOC113526686
XM_034305050.1 mRNA downstream 4353 27203767 ~ 27294632 (-) False LOC113526686
XM_026914124.2 mRNA upstream 8231 27311961 ~ 27314800 (-) True LOC113526781
XM_026913504.2 mRNA upstream 73107 27376837 ~ 27379548 (-) False LOC113526458
XM_026913503.2 mRNA upstream 73107 27376837 ~ 27379548 (-) True LOC113526458
XM_026914424.2 mRNA upstream 211950 27515680 ~ 27524516 (-) True fkbp4
XM_026914196.2 mRNA upstream 242767 27546497 ~ 27557970 (-) True wash1
TU125182 other downstream 141845 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 690656 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 1057980 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 1750057 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 2398422 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 3039801 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 3426228 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 3512849 30816579 ~ 30819614 (-) True G107803

Expression Profile