RNA id: XM_026914376.2


Basic Information

Item Value
RNA id XM_026914376.2
length 2483
RNA type mRNA
GC content 0.53
exon number 5
gene id fosb
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24680767 ~ 24686250 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGGCTTCATTCAGAAGACGAGGGACGCCGGCTCGCGCGCACAAAACGCTGTTTATTATCGCTGACCAAACACGCTGCGGACATTTTTTTCATGGATTTATAAATGCACACTTCGAAAAAAAGGGAATCTTTTAGGGATTGTGATCTCGCCAGCCAGGGTGGACGTCTCCGCTTTGGAGTTGTAAACTTGTTTCCCCCCAACGCAGAACTGGATTGCCATCTTAATGCAACTTTTTTGGAAAGACACGAAAGGCATCTTGACTGACTCTTCAAGTAAATCTTGTTACGACAGTGCACTAGAAGGCCAAATCTTTCGCTGGGCGCCAGGTGACGTGCCATTTTCGCCGGGAGCGAGCGCTTTCTCGGTTCCACTCGGCTCTGCCGGGGAGATGTTCCAGGGGTTTCCCGGTGACCCGGACAGCGGCTCCCGTGGAAGTTCCTCTCCGTCGGTCGAATCTCAGTACCTGTCTTCGGTGGACTCCTTCGGGAGCCCCTCCACCACCACTGCACCACAAGAGTGTGTATCTGCCGCTGGAGGTGTAGGGGTGGGTGGCGGGTCAGCTGGCAGCGCTCCAGGGGTGGACATGCCTGGCTCCTTCGTTCCCACAGTGACTGCCATCACCACAAGTCAGGACCTGCAGTGGATGGTGCAACCCACCCTCATCTCCTCTGTGGCTCCAGGGCAGAGTGGCACAGGTACGACCACCATGACCCAGTCGGTGGCCCTGGACCCATACGACATGCCAGGGCCAAGCTTCTCCTCCGGCTCGGGCTTCACTCCTCCCAGCTCGGACACCCCAGGTCCCTTGCGCCAGTCAAGGAGCCGCCGGCGCACGCGTGACGAAACGCTGACtccagaggaggaagagaagaggcgcgtcaggagagagagaaacaaactgGCCGCTGCCAAGTGTCGCAATCGACGGCGTGAGCTTACAGACAGGCTACAGTCGGAAACCGATAtgctggaggaggagaaggcCGAGCTGGAGGCTGAGATCTCAGAgctgcagaaggagaaggagcgTCTGGAGTTTGTCCTCATCACCCATCAGCCGAGCTGCAAGATCCCTTAccaggaggagcagcagcagacGCCGGCTCCTCCTCCGCCTCCATCCTCCTCTGTGGCAGTGGTGGGTTTGACTGTGAAGGAGGATGCGTTCTACCTGCCTCCACCTTACTCGtctcaccatcaccaccagcagcaccaccaccagcagcagcagcagcagcagcagcagccagtGCAGCAGCAGCAAGGGATGATGCAGGAGGTAGCCTTTTCTAGTTCTTTCTATGGGCCGAGCCAGCCGGCGCCGGGTGGCCCGTGCCTTGTCGCCGACGTCGGCGGTAACCCTGACGCTGGCAGCCACATCCCCTCATACACATCTTCATTTGTGTTCACCTACCCAGAGGGAGCCTGCGGCGCCAGCGCTAACCAGCGaaccagcagcagcgagcagtCCTCTGACTCCATGAACTCGCCCTCACTTCTCGCACTCTGAATGCCCTGACCCCTTCCTTCCTATCATTGCCctttttcatacacacacagacacacacacacatgcaatcatTCACTTTATCATGTGCAGCACAGTAGATGTGCTCAGCCTCTTTGACATTTTTCAAGAAGACCCTTTGTTATTGCATATTCACATCTTAGAGTTatatttattgcaaaaaaaaagtacaaaagttcTCACCGTTTCATTTGTTCcagctaaatgtttttttgcactGGTGCTTTAGTTGCTTAACTCAAGCCTGAATCACTATCAGATAAAGTATTAATTTGTAATAGATTCAAACATAGTATCAAAAAGAGTCAGCACCTGTGACATCCccccccacacactcacacatgttAAAATGACACCTGGTAATGCACTTAGTTATATTTATCTCTCCTCCTGCttggtctctttctttctctctctctcgttgcTCCTGCTTACTGCTGGTGTTTgagctctctttttctctccatgcTGATCCTCTGCACAGTGTATTTGTCTGAGTTGAAAAGGGGGCAAACACCTTCTGTGGCttcaatattttagttttttcatAGGCCAAACTGTAATCCACCCACTTCTGCACTCTTCATCCTCCATCTaatccttcctttccttctctgtcATTGTGCCGGGACTTTTAAACAATAAGGGACGTCATTTCCCTctacaatcaatcaatcaatcagtcagtcaatcagtcagtcaaaTCACTATCTATCTCTTTTTCTTGTCTCCTGCATCGTCCATCTGCCCATCTGTTTCTCCTCTCTTCTGTCTCTATGTGCCTCTGGTACTCTGTGAAGCCTTCAGCCCCTGAGAGCCCATTGGACCCTGAAAGCCCATGGAACCTTGAATGATGGCCGGGCCACCCCAGCACCACAGACAGCCCCCCTTTTCCCCTCCAGCATGGACCGACAGCCACACTGCACAGAGGAAAcgcaggatttaaaaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123618 lncRNA downstream 19419 24631658 ~ 24661348 (-) False ttc9b
TU123452 lncRNA downstream 146348 24533737 ~ 24534419 (-) True G104320
TU123423 lncRNA downstream 196695 24480361 ~ 24484072 (-) False sipa1l3
TU123422 lncRNA downstream 196695 24480391 ~ 24484072 (-) False sipa1l3
TU123411 lncRNA downstream 216189 24414900 ~ 24464578 (-) True G104291
TU123851 lncRNA upstream 357537 25043786 ~ 25079487 (-) False tmem91
TU123870 lncRNA upstream 427728 25113977 ~ 25151156 (-) False G104694
TU123871 lncRNA upstream 460111 25146360 ~ 25151156 (-) True G104694
XR_004578344.1 lncRNA upstream 505808 25192057 ~ 25214790 (-) True LOC117597583
TU123929 lncRNA upstream 552861 25239110 ~ 25241770 (-) True G104747
XM_026914481.2 mRNA downstream 5911 24667061 ~ 24674856 (-) False c6h19orf47
XM_026914480.2 mRNA downstream 5926 24667061 ~ 24674841 (-) False c6h19orf47
XM_034305321.1 mRNA downstream 6060 24667061 ~ 24674707 (-) True c6h19orf47
XM_026913281.2 mRNA downstream 18789 24631639 ~ 24661978 (-) True ttc9b
XM_026913529.2 mRNA downstream 106092 24480302 ~ 24574675 (-) True sipa1l3
XM_026913398.2 mRNA upstream 18755 24705004 ~ 24727022 (-) True capn12
XM_026914354.2 mRNA upstream 52842 24739091 ~ 24750597 (-) True znf296
XM_034305359.1 mRNA upstream 65404 24751653 ~ 24764161 (-) True clasrp
XM_026913845.2 mRNA upstream 65404 24751653 ~ 24764161 (-) False clasrp
XM_026913843.2 mRNA upstream 65404 24751653 ~ 24764160 (-) False clasrp
XR_004578330.1 other downstream 1070319 23590945 ~ 23610448 (-) True mmp23bb
XR_004578321.1 other downstream 2373998 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 3667667 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 3713857 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 4700508 19980069 ~ 19980259 (-) True LOC113527007
XR_003402792.2 other upstream 66363 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 699076 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 699076 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other upstream 699076 25385325 ~ 25485121 (-) False si:cabz01090165.1
TU124615 other upstream 1553081 26239330 ~ 26241005 (-) True G105376

Expression Profile