RNA id: XM_026914401.2


Basic Information

Item Value
RNA id XM_026914401.2
length 4651
RNA type mRNA
GC content 0.48
exon number 17
gene id spon1a
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29398604 ~ 29479432 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTgagattgttattattatttttttcccctgagctGAGGCTGTTTATAATGTCAGCGCCGCCGCTGGGAATTGCGCGTGAACTTCGGTTAAAAGCGCGTCGGCTCGACCCCCCTCGCGCGCACTCTGCGTCTCCATGACCCGGCAGCACGCGCGCTTCCGCTGCTGCGCGTCCGTCGTTGCGAATCGCGCACACGTCGAGTCTCAGCTCGGGAGTCCCCGTCGCTGTCGTCGTCGCCGCCGTCGTCGTCGCCGCAGGGGGCAGACGCTCGAGCGAATCGGCGCGCGCCTATTTATATTCCGGTGCCGTCCGGTCCGGCATGGGAGCAGCAGCCCGTCCTTAACGGAGGCGGAGATCGGACCAGTCTCTCGCGTGCACAGAAAgacaaattaataacaataacaacaataaccgTCCGCGTTTCTAACCAACTTCATTTTCGcatcacttctctctctctctctctctctctctctcgtgctctTGTGATTGTTCGCGCGATGGCAGGAGCGGCAGCGCGTGCCTTCCTGCTCCTCCTGTGCCTCTCGGTCGGTTCCCTGTGCGGCGCGCTCGCGTTCACCGAGGAGCCCGGGGACAGGGCGCCCAAATCGGACGGATATTGCAGCTGGATCATACGAGCGCACGGCGCGAGGAAGGAGCTTTACACCGAGTTTCGGCTCCGCGTCGAAGGAGAACCGGAGAGCTATCAGCCCGGCAGCACGTACAGAGTGACTCTGTACGCCACCAACCCTGCTTACTTCAGAGGCTTCACGCTCATTGCTTTAAAGGAAGGACGGAATGGCGAAAAAGAGGAGGATTACGCCGGGAATTTCCAGGTCATTGATGAAGAGGACACACAGTTTATGACTAATTGCCCCCCTGCTGTGACCGAGAGCACCCCTCGAAGGAGAACCAAAATACAAGTGTTTTGGACAGCGCCCCCGTCAGGCAGTGGCTGCATACTGCTCAAGGCGAGCATCATTCAGAGGAAGATTATCTCTTTCCAGGATGAAGGCTCTCTCACAAAGCGACTGTGTGAGAAAGAGCCATTATACGGCGAGGTCACTGAAAAACCTCTGCTGGATTGCTGTGCCTGTGGAACGGCCAAGTACAGAGTCACCTTCTACGGGAACTGGTCCGAAAAGCTGCACCCCAAAGACTACCCCAGACGAGCCAATCACTGGTCAGCCATCATTGGCGCGTCACACTCCAAGAACTATGTGCTGTGGGAATATGGAGGTTACGCAAGTGAAGGAGTCAAACAGGTAGCAGAGCTCGGCTCGCCCATCAAGATGGAGGAAGAGATTCGACAGAAGGGTGATGAAGTGTTGACGGTCATTAAGATGAAGGCGCAGTGGCCCGCATGGCAGCCTCTCAATGTGCGAGCCGCTCCCTCAGCGGAGTTCTCAGTGGACCGAACCCGTCACCTCATGTCCTTCCTGACCATGCTTGGGCCGAGTCCCGACTGGAACGTGGGTCTCTCGGCCGAAGATCTCTGTACGAAGGAGTGCGGATGGGTGCAGAAGCTCATCCAGGACATGATTCCGTGGGACGCCGGGACCGACAGCGGGGTCACTTACGAGTCCCCCAACAAGCCGACGCTTCCTCAGGAGAAGATTCGTCCTCTTACGAGTTTGGATCATCCCCAGAGCCCGTTTTACGACCCAGAGGGCGGAGCTATAACTCCGGTGGCcagggtggtggtggagagAATCGCCCGCAAGggtGAGCAGTGCAACATTGTGCCTGATAACGTTGACGACATCGTGGCAGACATCGctcaggaggagaaagaggaagACGACACTCCGGAGACGTGTATTTACTCCAACTGGTCTCCGTGGTCGGCCTGCAGCTCCTCCACCTGCGAGAAAGGAAAGCGGATGAGGCAGAGGATGCTGAAGGCCCAGCTGGACCTGAGCGTCccctgtccacacacacaggacttCGAGCCGTGTATGGGCCCTGGATGCAGTGACGAGgATGCGTCTACGTGTATGATGTCCGAGTGGATCACCTGGTCTCCATGCAGCGTGTCGTGCGGCGCGGGCGTTCGGTCCAGGGAACGCTACGTAAAGCAGTTTCCTGAAGATGGTTTTGCCTGCACCCTCCCCACCGAGGAGACCGAGCCGTGCACCGTCAACCAGGACTGCTCTCCTAGCAGTTGTCTCGTGACTGAATGGGGTGAGTGGGACACCTGCAGCGCCACCTGTGGGCTGGGCATGAAGCGCCGAGAGCGTATGGTCAAAATGCCTCCGTCTGATGGATCGATCTGTGGGGCTGAGGTGGTCGAGGTGGAGAAGTGCATGATGCCCGAGTGTCATACCATCCCGTGCTTGTTGTCTCCATGGTCTGATTGGAGTGACTGCAGTGTGACATGCGGTAAAGGAACCCGAACTCGGCAGCGCGTCCTCAAATCCCCGGTGGAGCTGGGAGAGTGCAGCGAAGAGCTGGAACAAGTGGAGAAATGCATGCTGCCGGAGTGCCcTTCAGACTGTGTGATGTCTGAGTGGTCTGAGTGGTCTGAGTGTAATAAGTCATGTGGGAAGGGTCACATGATCCGGACACGGATGATAAAGCTGGAGCCCCAGTTCGGGGGCGAGGCCTGCCCCGAGATTGTCCAGAGGAAGAAGTGCAAGATCAGGAAATGTAACCAAGGCAGCACCAGCAGCGATGAGAGAAAGAAACGCAAAGAAGCcagaaagaagaggaagaacagCCAGGGCAGGGAGGAGTGGATTGATGAGCTCGCAGGATGCAAAATGAAGCCCTGGTCTGGATGGAGTGACTGTACCAAGTTGTGTGGTGGGGGGATCCAAGAGAGGTTAATGACAGCCAAGAAGAGATTCAAGAGCACACAGTTAACCAGCTGCAAGGACAGGAAGGAGATCCGCGCCTGTAACGTCCATCCCTGCTAAGTGGTGCAGGGGATTGTGGGAAGGGACTCGATGTGATGAGGATATGGGAGGGGCAGGATTGAGTGTCAGTCGcggctctctttctctttcagtggTCTCTTTCAACCTGTTTAGGGTTGGCAGCAGTTTggtaattttttactttttctttttttttttgtactagaATGTAGTATAGTGGTAATTTGTCATATAAAAGAAATGCAGAGCAATGCTTAGAGTTGATGTTAAAGTTCTATATGATTTCTAATTTGTAGTACATTTCTATCTGAAAGTGGCTTATTAAAGTTCCGTAAGTTTCGTTTAAGTCGTAAGATTTAGTAATTAAAGTTAGACGATAGTGCATAAAGggccttttattttttcagtcaGCAAAAAATGTATTTCCTTCTCATTGATCccttctttattttaataataaaaaacaacactggACGCAGTATcctaagtgcaaaagtttgcatacccactaggacaaaataaagaagacaaaGGGTTACTTccctttgtgtgtttctttcccTAATATTGCAATATTAGCTGTAATGTTCAATGTTGTTCTGAAATGTGATTTAAGAGTAATTCCTTTCAAAAATTAATTGGGAATGCTAACTTTTGCACTGTAAATCTCCAGacaaaaatatagaatataatctttttttgtttgtttgttttataaaatcattccattttaataaaattgttttaaaactcATAATGTGTCATtaacacaattaatttattacataaaaatcCACCGttatctacagtatatttttgtCTGGATCTTTATTTACTGAGTCTGGTGTTTcagactgaaatatcacattatgCACATTGCTGTACTGAATTAAAGTCTTGGAGGTTCATTGCTAACTCATGTATAAtaggtcagtggttaaggttgGATTGGATTGTGTCTCACTTATTaattggataaaagtgtctccTAAGTGAATGTAATGTTGTTTTCAGTGTACAAACGGCACAAAATGGACCAAAGACAGGAACATTTGCTGGCACAAACATTGTTCTTACCCTGTACACTTCAAAAACTGGAATGAtggactattattattattattattcaacatttttaatgtcTAGAGATGTAACCAGAGCCATAAGACATGCAAGGTCAAGACCTCATGTTTCTAGCCACAGCAAAAATCTGAAGCATTAGCGTACAGGTTTTTAAGCTAACTAGCAGCATAACAACATGAAGAGTTCTTATTATTCTGTGAGACTGCTTGTGtggtatttaattttatttaaatttttaaaatatgtaaaaaactattttaacaaTTCTATGATAACTGGCCACTCTGgatattaatgtgttttatgaCATTCTTATAAATCAATAATGGATTTGAGCCAACTGAATGAATAACAGTagcattttcttctttcatGTGTCTCTTATGTGAAAGCAAAGCACAGCTAAACAGCCATTTTCTAAGCCTAAGAATATTTCTAggaatattcattttaatccaTTGTGACTTTTTAATCCAGCTGTGTAGACAGATGCCATTTTACTTGTTTCATTCTGATTGCATTTACGTTTCTTTTCCTCGTCTTAAGAGTGTACCCAAGATTGCTACCAAAGTGTTGTGTTGATCTTTTCTAGTTGTTTGTTGCCATCTTTGCTCCctgacataaaaaaagaaatactctGAATATTTTGGAATATGCCACCTTTACAATAAAAGTGATTGTGATCAAA

Function

GO: NA

KEGG:

id description
K24427 SPON1; spondin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402809.2 lncRNA downstream 118421 29273077 ~ 29280183 (-) True LOC113526826
TU126422 lncRNA downstream 195760 29202007 ~ 29202844 (-) True G106951
TU126243 lncRNA downstream 593174 28805033 ~ 28805430 (-) True G106772
TU126180 lncRNA downstream 619586 28764739 ~ 28779018 (-) True G106713
TU126166 lncRNA downstream 636867 28761518 ~ 28761737 (-) True G106705
TU126683 lncRNA upstream 141367 29620799 ~ 29661699 (-) False hipk3b
TU126679 lncRNA upstream 180209 29659641 ~ 29677509 (-) False hipk3b
TU126704 lncRNA upstream 200831 29680263 ~ 29707900 (-) True G107193
TU126702 lncRNA upstream 244682 29724114 ~ 29724377 (-) True G107191
TU126723 lncRNA upstream 285944 29765376 ~ 29844857 (-) True G107210
XM_026913423.2 mRNA downstream 29053 29345335 ~ 29369551 (-) True syt9a
XM_026913922.2 mRNA downstream 67651 29294886 ~ 29330953 (-) False ppfibp2a
XM_026913921.2 mRNA downstream 67651 29294887 ~ 29330953 (-) True ppfibp2a
XM_026913926.2 mRNA downstream 67653 29294888 ~ 29330951 (-) False ppfibp2a
XM_026913927.2 mRNA downstream 67654 29294889 ~ 29330950 (-) False ppfibp2a
XM_026913638.2 mRNA upstream 120153 29599585 ~ 29657809 (-) True kiaa1549lb
XM_034305475.1 mRNA upstream 189475 29668907 ~ 29714001 (-) True hipk3b
XM_026913661.2 mRNA upstream 247658 29727090 ~ 29766745 (-) False lrch3
XM_034305169.1 mRNA upstream 248652 29728084 ~ 29766747 (-) False lrch3
XM_026913659.2 mRNA upstream 248653 29728085 ~ 29766747 (-) True lrch3
TU125182 other downstream 2241464 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 2790275 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 3157599 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 3849676 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 222720 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 864099 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 1250526 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 1337147 30816579 ~ 30819614 (-) True G107803

Expression Profile