RNA id: XM_026927299.2


Basic Information

Item Value
RNA id XM_026927299.2
length 4232
RNA type mRNA
GC content 0.42
exon number 4
gene id c6h15orf39
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13550680 ~ 13562574 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgtcaTATTGTAATTGGCTAACCGTGTGCCAACAGCTTACATACTTATGGACTGACGCCTACAAACTCTTGAGAAAAATAAGGCAGTACTATCTGAGCAGCCTTCACCATCTCTCCATCCGCTAGAGTTCTCCAAACCACACGCTGTCTATGGAACTGAGCTTCTTCACAAGAATGATGATGGCTAACTTTCGCTTTTGGCATGGCTAGTCTAATAGAGCCGGGTGTTGGACGAGTAGGAGTCTCTGTCCTCGgtgtcaTTTGGTACGAATATATAACCTCAAAGACAGGATAATGATGAACAGTAAGCGGGTGCAGAGTTTCATGGATCCTCTACCTCAAGGCAAGAGAGCAAGACTAGAGGGTACCATGGGTACTGTGGGGACTTCAGGGCTTTCCAAAACCAACAGCCTGCCTCAGTACTCCCAAGACAAGTCTATACCCTACAGACACACCTATATGTCTTGCTCTCTCAGTGGACAAGAGACTTTAGATCTTCCCTCACCATGGAGTCCCTCTAGGATTTTTGTGAGAAATGGAGGGAGCCCTGTGGTTCATGCTAGAGCCACAGAGGGGTCAATTACAAATCCAGTCATTTACAGGCCTGAAAATGTGAATTTCCCTGAGGACAATGGCTCCCCCACTGTAGCAGAAGAAGTGGTAGTGAAGCAGAAGCTTGCCTACTGTTCTAGAAGTCCAAGTAAGCACAGCCCTAGTACTGCGAGAATAATGTCCCCTGTCCCTTTCAGGAAAATCCCTATAGGTTGCACAAGCTTATCGCCCTCAACAGCAGAAAAATCTGGTGGACTTGCTATTCCAAAACCAGTGTATGGACATAGTCCTTGCTGTGCTGGCCAAAAGTGCACAGTAGGTCACAGCTATACTATGGACCAAGGGCTGCAACGGATGCCCCCACAAATGTTTGAGGATGATCGGATGACATATTATGGTCACTGGGCATGCATGCATAAAAAGGAGTCAGAAACCTTGTTGCAGCAGAGATTATTGCCGTTTGAGCACTGTGGAGAGAGGATACCATTGAAAGACGTAACCACAGAAGGCTACCATGGCCTCAGCCCAAGCAAACCTCAGCGGGTTTCTGCTTTTTCTGATCCACGCCAGAGCAGCTATATGTATAACCATGTCCACCCATTTGTCCCCTCTTCACCAGATCGCTGCCAACGTTTTCAGATGCCCAAACAGGTACATAAGGATCTGGTTCCTATATATGAGCCAGTACCTGGGATGCAATATGGAACACACATGCAGATTTATCAAGACTGTCCTCACACATCTAAGTATAGAGATATACCTCAGCATTCCTTGCTTTATTGTCCAAAGAATAACATTGATGTTTACAGACCTGAGAATTTTCAGCAAACATCTGGGCACCGCCCTATTCTTCAGCCATTTTTTAGGGATTTCAAGAATTCCTACACTGTTGTCCCTCCTGGCCACCCAGTTGTTAGGAACGTACCTGTCTATCCTGCTTATAGAACACACTTAAATGCTAGACACATGAATCCGTTCACTAAGAGACCATTTTGTCCTCCTGTCATGCAGCAGGTAGAACAACCCCTGGACTTTTCCATGCGGCGAGAGCAGAATGCAGACTCCAACCAGGAACAACCTCCTCAAGGACAGCTTGGAATTAAAGGGACTTTTTATCAAACTGAGCCCCAAGCCCACTATATGGTTTCAAATAATTTACATCTTGAAAATTCATCCCTGGACAGTCCATGTCAGGGAGAAGATAATTGTCTTTTTATTAGTCACAATTATACAGCCTCTCCCACATGCACTGGTGATATATTCAATAAAAAGCAGAGTTTATGTTTTTCAGACAAAGCAGGTAATGGTGCTGATCTATCTAAAAAGCACAGGGTGGAAACTGACAAAAGctgtgaaaatgattctttgGTTAAACTTCAAATGATACATCAGCTGAAAGCTAATGAGACTAAGCACCCTTCTTCCCCTCCAATGCCAGTAATTAACAAAGTCTTTAGTCTGGCCCCTTACAAAGCCTACTTAGAAGCTACAGGTGTATTGTCGCCTGTACAAGACCCCAGTTGTCCAGTCATGGCACCTGACTCAAAGCCACCAAAAGATGAACCAGAAGCACAAAACACAGATCCAAAAACAAATTTAGACAAAGACGTCTTTAAGCCGAAAGTCAAAACTGAGAAAATAGAGCCTGATGAAAGGGCATGTCAATCAGAAAAAGAGAGCCATAGTCCTGTGATTAGTCAGAGCAAcaataatgtaaatgttaaagagGAACAAGACAATTTAGACTCAACAGAGGGTGACACCAAACACAACCTAGTTATAAAGAGTGGCTTTTATTCAGGTTCAAAGTCAGTCACATCTGAAATGCCAGAAAGCCCCCTTGAATGCACTACTGCGTTTAGTGTGATGGATGGAGTTGCTATGCCAACtcaaaacactgacaaaaaacAATCTGATTTTCCAGCCCCTTTGTCTGCGAAACCCCCAGTTCCAAGTCAGACAAATCAGGCTACGTTTTCCCTCAATAAAATCCCTCCTCATTGCCTTAAACTGACtagctttaaaataattttgcctGAAGGCTTCAAAACTTCCATGTCTCCAGTCCCTGAGGTTCTTCAGTCTCCTGTTGAGAATAAAGTAGCCATAAGCAGTAGACAGGCCCGGTATCAGTTCATGGAGCTTCACCAGTCACTCTGCAGAGTTATATCAGGCTGCATTTCTCAAACCTCACTTTGTGAGCTCAGGAACTGGTTATCCAGGTTGGACCTGGATGAGTCTGCTTCTCTTCAAGCTAAAACCCAAAAGGTCTCTTGCCTTCTGGGTCCCAAGGCTAGGGAGATGTGGATGAAAGATGGAGAGGCGATGAGAGCACTCCAGAAAGTTCTTTACCAGCTTGAGAACTATGTCAGAATTCAAGAGTGCCCCTTTCCTCATGTCATCAGAGCAGGGGCCGTGTTCATCCCCATGCTGGTGGTGAAGGAGGTGCTGTTTCCTCAGGTCCAGGGCACATTTATAGACCAGGTTCTACAAGAGCATCGAGTTGAGTTGCGGCCAACCACACTGTCGGAGGAGAGACAGCTGACTCAGCTACATAAGCGGGCTTTTTCTTCTAAACTAAGGAGGCTCATGTCCCTCAAACACCTGCCAGATATCTATCCAGATGTCCTCAACCTCCACTACTATGCTGATGTCTGCAAATTCCTTGattctACTCCTACAGATGATGCACAAAAgGTAGAGCCACCTTCTGCGTAATGTGATCGGATGCTGTGGTGAGCTGTAGGAAGTGATGTGGTTTGGGATCTCGGTCAAACCTGTTGCACACATCCCCCCAGCAAAGAAGCATCTCAGGCATCCGTTGATAAAACAGTGCAGGTGTTTACTTGGCCTAGTTATCATATACAGCTTCCTCTACTTTTTCaccaagggtttttttttttttttttaaacttccttTTTACTCCATACATGCAGGAGACTTTATAGAAAGATGTTTTTTGCCAGATACTTATTTTACACCATCAACCTTCTGGGCCAGATTTTCTCTAATTGCAttggaaaaataaattgatATAATTTAGTAATTTTCTCTGGCCATAAAATTGCTACTCACTCAGGCTTGTCTAGAGATCTTCCACTTGCTCAGGTCTGTTTTCaacctttctttattttcatattattatattcttaATCTTAGTAACAAGATTGTCTGTCTTGTCTTCTCTGGTACCTTTATATAGCTAATAATTAGTAGTGTAAATCCTCTACTAATATTTGCAGTTTAATGAAAAGTATAGAATTCTTTTCCAATATTCCATTTTCAGAGTAgtattgaaaatgtattgaaaatAGTATTGAAAATGCACATGGCATTTTATGTTATTACAATAAACTGTAGCCAACAGTTCCTTGATGCGGGGTGCAACCCTCAAGCATGTATGTTTTGTCCATGGTATTTATCTTTCCCATGGAAATGTGAAAGTATTGaaccttttaaaaatgatctggGATACATCATCAGAGGTTTATTAGtatatttaattagtttaattagaGTAAAGGGCTAAAGGTATTACATGCACCTTTTCAGGTAAAAAATACTAAAGATGCATACTAAAGGTGTGCTGTTAAAGCTCTCAGAGAGTGTAgatgatagattttttttttgtattttgcttgagtaaagaaaaatgactctaactttgccctttttttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117412 lncRNA downstream 234440 13311405 ~ 13318008 (-) False LOC117597528
XR_004578307.1 lncRNA downstream 240102 13311395 ~ 13312346 (-) True LOC117597528
TU117133 lncRNA downstream 369898 13182343 ~ 13182550 (-) True G98790
TU117117 lncRNA downstream 417275 13129200 ~ 13135173 (-) True G98776
TU117108 lncRNA downstream 523851 13027458 ~ 13028597 (-) True G98767
TU117519 lncRNA upstream 83001 13645575 ~ 13647786 (-) True G99118
TU117536 lncRNA upstream 170377 13732951 ~ 13768470 (-) True G99134
XR_003403491.2 lncRNA upstream 220201 13782775 ~ 13784737 (-) True LOC113534347
XR_003403492.2 lncRNA upstream 220201 13782775 ~ 13784674 (-) False LOC113534347
TU117539 lncRNA upstream 220218 13782792 ~ 13784697 (-) False LOC113534347
XM_026927749.2 mRNA downstream 26474 13522151 ~ 13525974 (-) True arl2bp
XM_026927460.2 mRNA downstream 46996 13494603 ~ 13505452 (-) False tgm2l
XM_026927459.2 mRNA downstream 46996 13494603 ~ 13505452 (-) True tgm2l
XM_026927145.2 mRNA downstream 61164 13475531 ~ 13491284 (-) True aars1
XM_026927282.2 mRNA upstream 9279 13571853 ~ 13575817 (-) True ppcdc
XM_034305365.1 mRNA upstream 20354 13582928 ~ 13588254 (-) True ints14
XM_026927280.2 mRNA upstream 20688 13583262 ~ 13588984 (-) False ints14
XM_034305364.1 mRNA upstream 20688 13583262 ~ 13588834 (-) False ints14
XM_026927136.2 mRNA upstream 50222 13612796 ~ 13643572 (-) False dennd4a
XR_003403539.1 other downstream 115473 13436901 ~ 13436975 (-) True LOC113534846
TU117111 other downstream 500137 13045823 ~ 13052311 (-) True G98770
TU116638 other downstream 1128470 12421102 ~ 12423978 (-) True akip1
XR_003403510.2 other downstream 1147167 12397687 ~ 12405281 (-) False znf143b
TU116624 other downstream 1237923 12312082 ~ 12314525 (-) False admb
trnaq-cug_10 other upstream 82835 13645409 ~ 13645480 (-) True trnaq-cug_10
XR_003403538.1 other upstream 202352 13764926 ~ 13765056 (-) True LOC113534845
XR_003403544.1 other upstream 220981 13783555 ~ 13783624 (-) True LOC113534852
XR_003403543.1 other upstream 224204 13786778 ~ 13786848 (-) True LOC113534851
XR_003403542.1 other upstream 224560 13787134 ~ 13787202 (-) True LOC113534850

Expression Profile