RNA id: XM_034304989.1


Basic Information

Item Value
RNA id XM_034304989.1
length 2409
RNA type mRNA
GC content 0.54
exon number 18
gene id LOC117597520
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30499865 ~ 30514364 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGTTCTCCTGGTTTGAGTGtggatacagtgtgtgtgtttgtaagtgtgtgtagagatggaGGATTGTGTGCGTTTGGTGTGTGAGACTCTGGGCGTACACACGGGCGATGAGGTGAGCGCAGAGAAGATCGCTGTGCTCTATCAGAAAGTCTTCCACACTGCCGCTGATCTCGGAGACGCACAGAGAGCCGTCAcgcaggtcagcGCACAGAACGGCGGGTTGCCATGTTCAGGCAGATGGATTCTGCATGTTCTTCTGGAGATGGAGAAGGAACGACAGAACAGGGAAAAGCTGTTCTGGGAGCTGCAGATGTTGAAAAGCAGCGTTTCTGATGGAGTAAACACACAACCGCTGTCCAAAAACTCCAGCTGCAAACACAAGAAAaagcGAGACACAAAGGCATGTGGTTTGTCGAGTCTCTTGGGAAGGGCTAGAAGACTTTATGTGagGCTGGATGTTGATGGTGTCTGGAGCATCCTCCCGTCTCCGTCCCTCAGTCACGTGACCTCCAGACGCCTGGGTTTGATCAATCCCACTAAATCAGACGTCCTGCTCTTACTGCAGTATAAATATGACATCATCAAAGAGCGACTTTACAGAGAGATGCTGCAGGAGGAGCATGgtgtcgGATGGTGGGAGTCGATGGAACCCTCGGAGcagacagactgtgtgtgtgatgtggagcAGAGAGCAGAAGAAGCTTTTAAACTGAAcgatgtgctgtgtgtgtgtgagctgcccGGCGTTCTTCACTGTTACAGGGGCGGAGACGAGGCGGAGTTACACTCCTGTCGTGATGAGGTCAGAGTGAGAGAGCGGGCGTGGACGTCCTCGCCCCGGGGACAGAGCTGGACATCCGCCATCTTCCTCTGTGATCTCCGGTCTCACTGTGAGGAGGAGAGACGCGCTCTCACCCGGCTGCTCAACAGAGTGGAGCGACTCGTCCTGACTGAGAtttatctgagtgtgtgtgtttctgtaaggagagccgagagagaaacacactcacacacggcACTGCTGACCTCCAGACAACACTGGGACAACtgGCCGTATCTGAGACGTTTGGGTGTGGAGGAGTTAGTGAAGTTCTGGCTGCAGGAGAAACAAGATCCAGCTACACCGCTCAGAAACGAGTGCAGAACATCACGCTGTGTACGACAGGCCGTGCTGCAGTGTGTGGTCCTGTGTCAGGAGCAGGAAAGGAGAACGCTCATGGAGATCCTACACAGTGTCTCACAGGAGGAGCTGCAggagcagagacacacactgacacctgactacaaggctgCAGGGACGACAGGTTCGGCTCTGAGACGAGGGTGTGTGTCCATCCTGAGGCAGATTAAATCCTCTCTACACTGCAGCTCCACACACTCGTCTGTGTCGTGGGCCGACTGCGCTGTTCATTTACTGgctcagctcacacacacacacgacgaGGAAGTCCagactgtaatacacacacttccagtcatgGATGCTGCTGCTCTTATGGTTCTGCTACACAAATATGAACTCGAGCTGCGTTCACCCAAACTACACAACCTGCACAACTTACTGCAGACGTCCAGCATCGAGAACACACAGATTAACGTCTCTGTAACAGACAGCGAGAGGACGGAGCAGAGACAGAACACTCCATCAGTTAGTGACGCACAACAAATCTGCACGGgcTGTGGTGTTGTCCTCGTCCCTGAGGACGCTCCGTATTTAGAGATCCTCGGCGTCGGAGAGAAGAGAGATgatgagaggaaagaaagaagagagggagaagaggaagagaggagagaaggaagagaggaagagaaagagaggagagaaagaagagagggagaagagaaagagtggAGAGAAGGAAGTgagggagaagagaagaggagagaaggacGAGAgGAAGTGACCTCAGCTCTACCTGAAGCACAGACGACAGAGGCGTCGTCTGCAGACTCACACACTccgcaccacacacactccgctTCGTCCGAGCACGAACACACACCGtctgcacacagacacacactcgtGGAGCCGCTGCAGGAGCAGTCCACATCCAGCATGGACGCTCAGAACGAGAGCAGCAGCGATGAACACGGAACAACATCAGCAGCTCTGGAGCTCGACTCGGAGAACGCACCGGCCACCggcgagacacacacacaggatgggGTGTGTGACggagtgtgtgaggaacagCAGCTCCAGCGAGATGCCACCATGCGCAGCCTCGTCGACATCCAGAGAAGAGCAGAGCAGCGGTGGCAACGAGACCGAGACCGACAAATTCTtagaGTTCAGGAGCGACTGTCAATCATTCAGAACAGGAAGTCAGACGAGGACGTGCTGGGCCTGAGACGCGAGGAAACATTCAGACACCTGACCAACACAcagGGACaacttgtgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127103 lncRNA downstream 29962 30443523 ~ 30469903 (-) True G107550
TU127127 lncRNA downstream 76527 30421252 ~ 30423338 (-) True G107574
TU127088 lncRNA downstream 92901 30368887 ~ 30406964 (-) True G107536
TU127084 lncRNA downstream 108407 30363627 ~ 30391458 (-) True G107532
XR_003402799.2 lncRNA upstream 199754 30714118 ~ 30715453 (-) True LOC113526678
TU127459 lncRNA upstream 271229 30785593 ~ 30849684 (-) False selenot1b
TU127460 lncRNA upstream 296683 30811047 ~ 30826087 (-) True G107800
TU127464 lncRNA upstream 304842 30819206 ~ 30820422 (-) False G107803
TU127466 lncRNA upstream 306345 30820709 ~ 30822357 (-) True G107804
XM_034305125.1 mRNA downstream 9952 30469960 ~ 30489913 (-) False ppp6r2b
XM_034305127.1 mRNA downstream 9952 30469960 ~ 30489913 (-) True ppp6r2b
XM_034305126.1 mRNA downstream 10130 30469960 ~ 30489735 (-) False ppp6r2b
XM_026913573.2 mRNA downstream 35791 30452707 ~ 30464074 (-) True LOC113526499
XM_026913453.2 mRNA downstream 55546 30437029 ~ 30444319 (-) True adm2b
XM_034304990.1 mRNA upstream 1989 30516353 ~ 30550285 (-) True kcp
XM_026914355.2 mRNA upstream 43231 30557595 ~ 30562846 (-) True calub
XM_034305476.1 mRNA upstream 43231 30557595 ~ 30562789 (-) False calub
XM_034304969.1 mRNA upstream 51038 30565402 ~ 30574675 (-) True utp15
XM_026914144.2 mRNA upstream 78357 30592721 ~ 30597744 (-) True cfap161
TU127077 other downstream 154989 30343531 ~ 30344876 (-) True G107525
TU126682 other downstream 785873 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3342725 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 3891536 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 4258860 26239330 ~ 26241005 (-) True G105376
TU127397 other upstream 215594 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 302215 30816579 ~ 30819614 (-) True G107803

Expression Profile