RNA id: XM_034304990.1


Basic Information

Item Value
RNA id XM_034304990.1
length 7606
RNA type mRNA
GC content 0.50
exon number 43
gene id kcp
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30516353 ~ 30550285 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGCCGCCGCCAGATGTTTCTTGTTTCATGAGCGCGAATTCCTGTCATTAACaggaaaacagcagctctgtgtcatgctggtgtgtgtgagtgtgtgtgtgcgcgtgtgtgtgtgtgagaaatgcaGGACTGGGGTCAGTGTTCTTACAAAGAGCACCGATTTCTTTCTCCCGGTTGTGaatctttcatttttgtaaaGAAGTCAGAAAGTTCTTTGTCCCGCCGGTTGAGCTGCAGCTGGAGGGAACATGGAGCTGCTCATGGGGAGAAGGTTCCTCTCTGctctcctgagtgtgtgtgcgctgtggAGGATCTGCTCTGCGTCGCaaactgaccatcacagccaggTCAGTCTGCATCAGGACAGCGACGtcATCGACATTCTGGAAATTCTGAGCATCACAAACTCACATCGAGGCATCaccaaggtcaaaggtcatgacCCGGGCATGGCCGCCTGGCGTTTTCGCAGTCGCACGCCTCACCTGACCCTGCCGCTGGATGTCTATCGCCGCTTTGTGAGGGCGTGGCGCGGCTCGCTGAGCTTGTATCTGGTTGGTCAGCAGTTTGGAGGTTCGGCGGTGACTCTGCTGTCTCTGAGCTCTCCGGGGAACACGCCGCTGCTACGCATCATCTCCAACACGCAGGAGGATTTTCTCCAGCTGGAGATTCGCACGGAACCCAGCACAAAACTCACGGTGCTCAGAATCCCCGGGGGAAACCCGTTCTCAGGCGGGAGGTGGGCGAGGATGGTGCTGGGCATGAATCCTGGGTGGGTGTGGCTGGAACAAGAGTGTAAAGGAGCCACGGTGCTGAAGTTTGCACACCAGGGACGACCTTTGACCCTTAACCTCCCTCCCCATGACCTACAGGTCACCTTAGCAAGCAAAGCAGATGAGAAAGCCAGCAAGTTTAGCggttACCTGCAGATTGCACAGATCTCCACTAAACCCTATGAGAGACGTCCGTGGCTCTGCAGCAGCGTTACCGactcCGTCCCCATTACCCCCACCCCCTACAGCACTGTGGATTTGGAGCAGGAGCTACAGGACGAGCCGGAGCGCACGGTCGGCTCGGTGCTCGGTCCCCCGGCGACTCCACACAGGGAAGTGGCTCCCAGCGAACAGAGACAGCGAGCCAGAAGCCTGGAGGAGACTCTGCACAACATCAACACCATGCTGAGCATGCTGAAAGAACAGaatGAGCGCCTGCAGACTCGGGTGCTGTATTTGGagtcctgtgagtgtgtgaagaaaACCTGTGTCTGGCAGAACCGTAAGATGGAGGAGGGATCTCGCTGGAGGACTGAGAACCACTCCGAGTGTTCCTGCTCCTCTGGGACAGTCCAGTGTGACACTTCAAACAGATGTGTGTATAACGGAGGTGTGTATGATCAAGAAGAAGTGTTTGTACCCAGAACTAATCCGTGTCTCAGCTGCGTCTGCTCTAATGGGAAGGTAGCGTGTAGCAATGTACCCTGCCCTACGCCTGACTGCGGTTTGGTGGAAACTGTCAGTGGAGAGTGTTGTCCCAGGTGtcgaaGTTGTGGCCATTACGATGTGCGGCATGAGCACGGCTCAAAATGGAGGGATCCACGAAACCCCTGCAGTGTCTGCACATGCTCAGAGGGACGTGTTGAGTGTTCCACAGAGAAGTGTAACACCCAGTGTAGGGACCCGGCACCTTCTCCAGGAAACTGCTGTCCTTCCTGTAATAGTTGTGCCCAGAACGGACAGCAGTTCCAAAACGGGGCCACAGTTACGAGTAGAGATCGatgtagtcagtgtgtgtgtgagAATGGAAATATTAACTGTGAGCCCCTCCCCTGCCCCAACCCAAGCTGCTCTCATCCAATCAGGAGAGCCGGAGACTGCTGTCCAAGgtgtgaagAGTGTAATTATGAGTCGGAGGTGTATTCACATGGACAGAGTTTTACTTCCAAACAGAATCCCTGCGTGACCTGTCAGTGTTTAagAGGTAGTGTAAGATGCCATCAGGAGAGTTGTCCCCCTGTCAGATGTCCAAACCCCGTCAGAGACACCCGTGTCTGCTGTCCTGTGTGCAGAgtgtgtgtgtcgggGGGTGTAGAGTATGAGCACGGGGCAGTTTGGGACTCTGAGGACACACCCTGCACCAAGTGCTCCTGCGAGGAGGGGAATGCTAGGTGCTGGGTGAAAGATTGTCCTCCTCTGTCCTGCCATCATCCCAACACAGAGTCAGGAGAATGTTGTCCATCCTGTAATCACTGTCTCTACAAGCAGCGCATTTATGAAAATGGACAAAGGTTCCTCGACCAAGACGAACCGTGTAACAGCTGCACCTGTCAGgatggcTCAGTGGTCTGTAGTGCGATATACTGTCCACAAGTTTCCTGCCCCAACACTTTCACAGGGTCTGGAGAGTGCTGTCCCCAGTGTCcaaCCTGTGATGTTCATAACCATGTGTATGTCGACGGTGAGACGTTTACGAACCCCGAGAACccgtgtgaagagtgtgtgtgtcggggGGGAGACGTGAATTGTCTTAACAAGTGCCCCAGAGCCAACTGTCACTATCCCGTCACTGGGACCTGCTGCCAGAACAACTGCAACGGGTGTAGCTACGCGGGTAAAGATTATCCGAACGGAATGACGTTTCCTCATCCGGCCGACTCGTGCAGGGAATGTCACTGTCTCaatggTAATGTGCAGTGTAGGATGAGGAGATGTCCTCCTGTCCAGTGCAGTGAACCCATAATAACCCAAAGACAGTGCTGTCCTCAATGTCCAgCGCCCCCTGCTGACTGTGTTTATGGAGAACAATCATACAGACACGCACAGCGCTTCTACCATCCCACAGACAGCTGCCAGCTCTGCTCGTGCACCAACGGGACGATGAGCTGTCACCGTAAGCCCTGCCCCTCCGCCCCCTGCGCCCACCCTGTTCAACAGGAATGCTGTCGCACGTGTGATGgatgtCTGTATAACGGTGTGGAACGTGCTAACGGAGAGAGATTTGCGGACGCGTCGGATCGCTGTGGGACGTGTGTGTGTCGTGAAGGCACGGTGACCTGTGAGAGGAGACACTGTCCCCAGACCACATGTCCATTTCCTGTACAGACAGagtgctgtcagagctgcaacGGCTGTCATTATGCTGGTGCAGATTATTTAAGTGGACAGGAGTTCTTGGACCCCTCAGATCGCTGTAATCACTGCACGTGTATAAATGGTGATGTGACCTGCAGGCAGAAACCCTGCTACAACCCGGGCTGCTCTCACCCGGGGCCCTCTCCTGGACACTGCTGTCCCGTGTGTGACGCTTGTTCCTATAGTGGTGCGGTTCTGTTGAACGGACAATCACTACCAGACAGAACAAATCCATGTTCAGAGTGCACGTGcaggagCGGCTCGGTGCAGTGTGAGAGGAGAACGTGTCCTGCTGCTCCGTGTCCTAATCCTGTCACTGGATCCTGTGGTTGTCCTGTTTGTGAaggttgttCCTTCCACGGACGAGTTTATGAAGatggaaatgtttttccatCACCTAATGCACAATGTGAGGAGTGTACATGTTCTagAGGTGAGGTGAGATGTACCTCTAGGTCCTGCCCCAGTGTGTCGTGTCCTCACCCCGTGGTGGACGGTTGTGGATGTGCAGAGTGTAACCGCTGCAACTTTCACGGGCGAGTTTGTGTGAACGGAGAAAACTTTTCTGATCCTAAAGACAAGTGCCAGAGATGCACCTGCCtgaatggagatgtgtcgTGTCAGAGGACGCCGTGTCCTCAGCAGTGCACACACCCTGCACGCTCCTCAGGCTGCTGTCCTGCGTGCGACGCGTGTTTGTATGAAGACGTGCAGTACGCACACACGCAGGTGTTCACGCCGCTCTCGAACCCGTGTCTGCGCTGCACGTGTGTGAGCGGGAGCGTCACCTGCACACGGAGCGCCTGTCCTGTAGTCACGTGTCATAATCCAGTCATTCCTCCGGGACACTGCTGCCCCCAGTgcagagtgtgtgtgcagaacaATGTTGTGTACCGAGAGGGGGATAGGATTCCTTCTGACCGTGACCGGTGCTCTCAGTGTCTgtcaggtgagaacacacacacacacacacgtgcattaACACACCCTCAGACTCTATCTAAGAGATATAGTgATGGAGAGGTGTTATGTGCAGGGTCTCAGTGCGCAAAATTAAACTGCATGCACCAGGTTACTGATCCAGACTCCTGCTGCCCAAGATgccgagGCTGTGTGTATGACGGAGTTGAGCACTCTGAAGGCAGCACTTGGTTCGCCTCCAGTGGTCCCTGTATGtcgtgcatgtgtgtggacGGAGTGACCACCTGCTCGGAGAGCCAGTGTCTCTTTCCCTGCATCAACCAGATCACTGTTCCTGGAGAGTGTTGTCCTCTGTGTGCagACTGCGTCTATGAGGGTCGTGTGTATGGACCAGGGGAGAACTTCCATCCATCAGATGATCCCTGTCAGATCTGCACATGTgaggtgaTGCCAGACGGACAGCAGCACCTgcgctgttacaggaaacagTGTCCCCGTCTGGTGGACTGTCCCAAAAACAACATAATGTTCAGCAGTAGTGACTCCTGCTGTCCAGTGTGTGCACAGCCTCTCAGCGTCTGCACAGAAGCAATGATAGGAAATGAAGTTCTCGCTACGGATGACCCCTGTTTCACCTGCCAGTgcaaagatctAACATGGACATGCATCCATAAATCCTGTCCCACACTGAGCTGTCCTCCAGATGAACAGTACACACCACCCGACTCCTGCTGTCCTGTCTGTGAtgtgtgtgtggtggagggAGGGAGACGGCGTGTGAACAACGGAGCGAGCTGGACTGATAGTGAAGACGAGTGTATCACCTGCTCCTGCAAActggGACATATAGAGTGTAATATAGAGGAATGTGCTCCGCTTGTGTGTGAAGTCGGACTGCTGAAGGTCAAAAGCCCCGGAAAGTGCTGTTATGAATGTCAAgacgTCAgggcacagtgtgtgtatgagggacAGGTGTATGATTCTAATGCACAGTGGGAGGTGGATGAATGCACTTCCTGCACATGTGTGTCCGGAGACGTGCACTGTCAAACCGAGAGATGTCCAGCATTGTTCTGTGCCtctGATGAAACTCCGTCTGTGATTCCCGGGATGTGTTGTCCACGCTGTATCCCGCGTCCCGCCACCTGCATCGTGTTCGGAGATCCTCACTATCGCACGTTCGACGGCAAGATGGTGAACTTTCAGGGGACGTGTACCTACGTTTTAGCGCAGGATTGTGAGGGCGGCgacttcagtgttcatgTGACGAATGATGATCGCGGTCGTAAGGGCGTGTCCTGGACTAAAGAGGTGACGGTGTACATCAGGGATATTGTGATACAGCTGCTGCAGGACTGGGTGGTGAAGGTTGATCATCAAACCATCACGCTGCCGTTTCTTAAAGAGCCGTATATTTACCTGGAGCGCAAATCCAACACCATCCTCCTCAACACCATTGTTGGCATGAagGTGATGTGGAACGGACGTTCTCACCTGGAGGTCAGTGTTCCAGGGACGTATAAGGAGCACATGTGTGGTCTGTGTGGAAACTTCAACAACTATCCTCAGGATGACATGCGGCTGCGTAACGGACAGATCACCACCTCAGAGGCGACGTTCGGAAACAACTGGAAGgTGGACAGTGGGAATGGCATGAGCGCTCAGTGCTCAGACGCGAAGAGCATCAACCCGTGTATAAACGCTGGATATTCCTTTCGTAAGACGGCGAACAGTCGCTGTGCGGTCCTAAAGTCCACCGTGTTCGAGCGCTGTCACAAAGTGGTGCCTCCGGAGATGTTCTTCGCCTCGTGTGTGTATGACCTGTGCGCCTGCGCAGCCAACGCAGACGAGTGTCTGTGTGACGCTCTGGAGGCGTACGCTTCTGAGTGCCGCGAGGCCGGAGTCGTCTTACAGTGGAGATCACCTTCCCTCTGTGCTGTGGGCTGTCCTGTGGATCGCGGTTATGTTTTTGATGAATGCGGTCCTCCGTGTCCTAAAACCTGCTTCAACAAGGACGTGCCGCTGGGCGTGATCGAGGCGCACTGCTTTAAACCGTGTGTTCCAGGCTGCCAGTGTCCCGCCGGACTGGTGGAACATGAATCCCACTGCATTTCCCCGGAAAAATGTCCCAAAATCATCCACGGAAACCCCTGAGCTCCTCAGATCTATAAATCCACAGAACGGCACCAGAACTAAACCTGCTCCAAGGTTTCCATTTTTACACTATAACTCCTGATTTATCTTTGAGCAGTGTGTTGCATTATGGGAATTCTGTATCTGCTGTAGTTCAGATACTGCTGCTCGATGTGGCCATTTTCTTCTACCTGGTGCTCACCATAAAAACTTAAAGCggcagtttgtaatatttagagCTATCCCCTTTCCCCAGACTGACTCCACTCACTCTGactaaacaacacacacattgtaaGTTGCTATTTACAGAAAAAGAGTTGGCGCTGACCAGCTCTGTTACTGTTATGGGCGGGGCTAATTTCAGGACCAGAAATTTAACAAAGCCTGAATTTAAGAAACTTAGAAACCATATCTTTGGTATTGATTGATTATTACAGATGTAGGAACACTTCAatgttacaaactgcacctttaaaaccACAATGAAAGTCAGTCCTGCGAAATATGTTATGATTAGTTTAAATTTAAAGCGGTGTATAATTTGAGAATTTCAccttacaaaaaaatgcagcattataAGTGTCATTTATGTGctaaaaaatattaagaaaaagcAGACgcaatgaaaaatattaagTCTGAAAATCTAAACATGGCTAATataactacaaataaataaataaataaaagaacttCAGCTTAAGAGTCACACAGTTTTCGCAGCTAggatttatcttttattttagcGTTAATTTTTTAGCGTAGAATTTTTTGGAGAGTAACTCAAACCCTTCTTCTCTCGCTCTGTTCTGTTAAGCTAAGTTTCGTTTTCTGCAGGGATTTAACTACAATTAACAAACACTCATAGAAACATACGTTAGCTGCTAACTCAACGTGcgtttaaaaaaagatgatgttACGTGAGTTCACGTTTTTTTACGCAGTCAGTGCACATACTAATGAACATGTATAAGTTTTAAGGCATAACCTAAACTCAGGCTACGATCAGAGGTGGAAAATACTTTAACGATAATTTTACTgagtttgtattaaaatctgatttaaaatgtccttattttacttatttacatttatatgaaatatcatgttttatttcttattttttatttagacttttcAGGTTCTTGTTACAGATCTTTAAAGATTTTAGctttaatatttttcctttgtttagctagcaataaagttaaaagaaaaaaaattctattcgTTTAATTTCACTCTTCATGGTTTAAAGTTACTTAGTCACTCCAAAAGAAATGTTACTAACTCCGCCCCCAATCCCCATAACTCCGCCCCTTattctaaccttaaccttaaccttcaTATCTGATCAAGAgtgaaaatggttaaaaaaaaaaaaaaaacacattcataattttaattttagctaaaatat

Function

GO: NA

KEGG:

id description
K24522 KCP; kielin/chordin-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127103 lncRNA downstream 46450 30443523 ~ 30469903 (-) True G107550
TU127127 lncRNA downstream 93015 30421252 ~ 30423338 (-) True G107574
TU127088 lncRNA downstream 109389 30368887 ~ 30406964 (-) True G107536
TU127084 lncRNA downstream 124895 30363627 ~ 30391458 (-) True G107532
XR_003402799.2 lncRNA upstream 163833 30714118 ~ 30715453 (-) True LOC113526678
TU127459 lncRNA upstream 235308 30785593 ~ 30849684 (-) False selenot1b
TU127460 lncRNA upstream 260762 30811047 ~ 30826087 (-) True G107800
TU127464 lncRNA upstream 268921 30819206 ~ 30820422 (-) False G107803
TU127466 lncRNA upstream 270424 30820709 ~ 30822357 (-) True G107804
XM_034304989.1 mRNA downstream 1989 30499865 ~ 30514364 (-) True LOC117597520
XM_034305125.1 mRNA downstream 26440 30469960 ~ 30489913 (-) False ppp6r2b
XM_034305127.1 mRNA downstream 26440 30469960 ~ 30489913 (-) True ppp6r2b
XM_034305126.1 mRNA downstream 26618 30469960 ~ 30489735 (-) False ppp6r2b
XM_026913573.2 mRNA downstream 52279 30452707 ~ 30464074 (-) True LOC113526499
XM_026914355.2 mRNA upstream 7310 30557595 ~ 30562846 (-) True calub
XM_034305476.1 mRNA upstream 7310 30557595 ~ 30562789 (-) False calub
XM_034304969.1 mRNA upstream 15117 30565402 ~ 30574675 (-) True utp15
XM_026914144.2 mRNA upstream 42436 30592721 ~ 30597744 (-) True cfap161
XM_026914231.2 mRNA upstream 53804 30604089 ~ 30609207 (-) True si:dkey-88e18.8
TU127077 other downstream 171477 30343531 ~ 30344876 (-) True G107525
TU126682 other downstream 802361 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3359213 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 3908024 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 4275348 26239330 ~ 26241005 (-) True G105376
TU127397 other upstream 179673 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 266294 30816579 ~ 30819614 (-) True G107803

Expression Profile