RNA id: XM_034304991.1


Basic Information

Item Value
RNA id XM_034304991.1
length 8787
RNA type mRNA
GC content 0.49
exon number 57
gene id otogl
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27662408 ~ 27708771 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGACTCCACCTATGAGAGGGTGATTGAGGTTATTATGATGGACGCTGTACCTGCGTTCAGGTGGAGACTCCACTCATGAGAGGGTGATTGAGGTTATTATGAATGACACTGTACCTGCGCTCAGGTAGAGAGACTCCACCCATGAGAGGGTGATTGAGGTTATTATGAATGACACTGTACCTGCGCTCAGGTAGAGACTCCACCCATGAGAGGGTGATTGAGGTTATTATGATGGACGCTGTACCTGCGCTCAGGTAGAGACTCCACCCATGAGAGGGTGATTGAGGTTATTATGATGGACGCTGTACCTGCGCTCAGGTAGAGACTCCACCCATGAGAGGGTGATTGAGGTTATTATGATGGACGCTGTACCTGCGCTCAGGTAGAGAGACTCCACCCATGAGAGGGTGATTGAGGTTATTATGATGGACGCTGTACCTGCGCTCAGGTAGAGAGAGCGGTTCCACTCTAGCTGAAGATGGGAATTGGCCGCGAGTCGCTCAGGATAAAAACGCATCCCAGCGCCTGACCCTGATTTAAACTCCGCGGCTTTTTAGTCTGCTCACTTAGAGCTGACGGCGGCTTTAGCAAAAAcctgagagagaggggaaaaagcaaagaaaaatgacttcataATTTTAACCTGTTTCCATACGGACGCTGCCCTGAGATGAACGAACAGCGGAAAGTGAAGCTGTTTTCTCTGTGGACGCTTTTCTTCCTCAGACTGGTCGTATTTCCAGGATTCCTTTGCCAGGtatcaaaaacagaaaataacttGAATAGGAGAGTTAATGCACTGCGCCAGAAACGAGATCTCTTCCGTGAGGAGGCCGTCAGTGCAGCGCTGTCTGACTCAGCTCTCCATCGAAGTGTCCTGCGTAATTATACAGCTCGAGATGCatctgcagAGTATTGCGGGTGTCTTAATGGCGGCTGGTGTCAGGAGGGGGGGCAGTGTGACTGTGCACAGTTCCAGGCTCTGGGAGACCGCTGTCAGATCaTTCCCAACCTCGGGCAGGACCGGGATGGGATTTGTCGCTCATGGGGTCAGCACCATTTTGAGACATTTGATGGAATGTACTACTACTTCCCTGGAACATGTTCATATATCTTGGCCAAAGACTGTCACTCAGCAGAGCCCCGGTATACTGTGTGGGTTCACAACAGTCGTTCATGTCGTGGCTCAGTGTACTCTTGTCCTCGTTCTCTCAGTCTCTTCTTTCCAAACGAGGAGGAGATCCACATTAGAGGCTACCGGGTGCTGAAGGGGGAACAGAGACTAAGTTTGCCCCAGACGGTTCATAATGTCTTTATCGAGCGACTTGCTGACTACATCCTGGTGAAGAGCACATTTGGCTTCTCTCTGGCCTGGGATGGAAGCTCCGGGGTCTACCTCAAAATGACAGAGGAGCACAAAGGCCGGCCTTGTGGCCTGTGCGGAAACTTCAATGATGACGGATCAGATGATCTCACCAGCAGCCACGGTATAAAATCGGAAGACGTTGCTGAGTTTGGGAACAGCTGGATTGTGGACCTTCCTCATGAGCCACGCTGTCCTTCTATAAATGATGACTTTCCTGGACCATGTTCATCTGAGTCTGAAATGGATGATGCCATTGAGAAGTGCAgtgctttgcttttctttccttttatctCCTGCCATGAGAACATAGATCCCAATCCATTTGTTGCCAGCTGTGTTTCGGATCTATGCGTCTCACATGATGAAGAAACGTTTTGCCGGACACTAGTCGAATACACCAGGGCCTGCTCCCATGTTGGTTATCCAGTCCGAGAATGGAGAGACAGCTTCCCTACATGTGCGGATGGATGTGAAGATAGCTTTGTCCATAGAGACTGTATCAGTTGCTGCCCCCCCACCTGCACTTTTGAAAAAGAATGTCTAGGCACCAACCTGCACTGCCTGGATGGATGCTACTGCCCCGATGGGTTGATTCTACAGAATGGAACTTGTATAGCGGTGTCTCAGTGTCCATGTGTATATCATGGCACAGCTTATCCTTTGGGTCATGTTCTGGAGCAAGGCTGTACTGTCTGTGTCTGCATGGGAGGAGTATGGAACTGCACTGAAAACAATTGCACTTCGGAGTGTACAGTGATGGGTGACACACATGTGACCACGTTTGATGGGCGCATTTATATGCATACGGGCAAATGCCAGTATGTACTAGTGAAGAGCCGTGGCAACACCAGGTTTACTGTCACAGTGCAATACGCAGCATGTGGAGAGTCTCAGGAAGATTCCTGTAGTCACTCAGTGACTCTTGTGGTGGATGAAGACGTAAGCAGGCAAGTCACCCTCAACAGAGAAGGAGAGGTCATTATTGGAGCGAGCATGATTGTCAGTCTACCTTACTCAGATGacGTAGTGGCTGTGCGCAGGCTGACATCTGTGTTCATGGGCCTGCGGGCTTCCTTTGGACTGAAGCTGCATTATGACTGGCGGGGTGGGCGAATCTACCTGCAGCTGGACAGCACATGGACAGGCCGCACCCTCGGACTCTGTGGAACACTTAATGGCAACCTGCGAGATGACTTCCTctctCCAGCTGGTATGATAGAAGGTACACCACAGCTGCATGCAAATGCATGGAAAGTGTCTTCAGCATGTATCAGCCCTGTTAACATCCCTATCATTGACCCCTGCGAGATGAACCAACAAAACGTATTCTATGCATCATTGTGTGATATTCTGACTGGAGACGTGTTTGCTGCATGCCATGCATACGTGAGTCCTGGTGTGTACTACCAGCAGTGCCGCTTTCAAGCCTGTCGGTGTGGCAGTGGCTGCCTGTGCACTGCGCTCGCCCATTACGCCTACGTCTGCTCCAAACACCACATCAACATCTACTTCAGAGCACATGTCTCTGAATGTGgcATGGTCTGTTTAGGGGGAATGATGTACCACCCTTGCACGACTTCATGTGGGAGAACATGCCAGTCAGTGAGTAGTGGtgaagtgtgtgatggagaCTGTGCTGAAGGATGTGGCTGCATGGATGAGATGTTCTATGATCACGCACGTCAGCGCTGTGTACCCCTATCTCAGTGTCACTGTTACTTCATGGGTTCAGTCTTTCAGCCAGGAGAAGTGTCCTTCAGCTCCTCTGGGCcttgTCTCTGCAGAAATGGTCGTATGGAGTGTGTGCCTGAAGAAAGagAGCCTGAGACAGATGATTGTCCAAATGGAAAAGTGTACTACAACTGCAGGGGTCCCCAGGGTGCAGGGCCATCTGgcgtgggcgtggcctgtgaaCTCACCTGTAGGAACCTAATGCTGAACCTTACGTGTCCTCCTATGACCCCCTGTGTGTCTGGATGTGGCTGTCCAGCAGGGTTGGTTGGTCATAATGGAGAGTGCTATTATCCAGAAAACTGTCCATGTGCCTGGCTTGGTCTGGAGTATCTTCCAGGAGAGACAGTGGATACGCCTTGTTACCGCTGtgtgtgtcaTCGTGGGTTCTTTAATTGCACATACTTTCCCTGTCCAGCTGTGTGCACTGTCTACAGTGACCGTCATTACTACACATTCGACGGCCTGGAATACGACTATGCTAGTGATTGCCAAGTTTACCTTATAAAGAGTGTAGGTGATACAGAGATTTCTATTACAGCTCAGAATAAAGACTGCTACGAGAGTGGAATAGTCTGCATGAAGACCCTGCTCATCTATGTTGGCCTCACTAAAATCTACTTCAATGATAACTCAGGCAGACCTAGCCCCTCTACTGTGGTTGGACGAGGGTACGAATTTGAGCTGTGGACCGCAGGCTACTACACTGTGGTCCATTTCCCCAACCATGACTTGACTGTACTGTGGGACAGAAAAACAACCATCCACATTCGTGCTGGGCCACGATGGAAGGGTCAGTTCAGTGGCATGTGTGGGAACTTTGACATGGTGACAGTGAATGACATGACCACAGCGGGGCACATGGAGGTCAGCAATGCTCAGGCTTTTGGAAACAGCTGGGCTCTTGGCCAGTGTGAGAGTGATTTTATAGTGCGCAGACCATGTGAAGGGGACCTGAGCAGACAGCCATACGCTAAGCGAGAGTGTGGCCTTCTCTACAGTGACGTTTTTGCTTCATGCCACAATGTGGTGGATGTGACCTGGTTTTATAAAAACTGCCTGACAGACACCTGCAACTGCAATCGAGGGGGCGACTGCGAGTGTTTGTGCACCAGCATTGCTGCGTACGCGCATAAGTGCTGCCAACACGGCGTCACGGTACACTGGAGATCTCCCACTGTCTGCCCATATGACTGTGAATACTACAACCAAGagctgGGTGAGGGTCCATTCACTTTGTCTGCCACTGAACTGAatgattcagtgtgtgtgtttggagcgAATGTCAGTAGTGGAGAGGTGTTTCCTCTGCCGAAGACTAGTGCTCAGCCAACTGCCATCTTCAACCTCATGATCACCAGTGGACTTTACAAGGACCGAGCTTCACGACTCCCCGTTGTCTCACTGGAGTCTGCCGAGCGCCCAAACTACTTCCTGTGTGTCACACCCAGTCGCGTTGTGCGCCTGGAGCGCTGGAGACCCGATGAGGACTTTCGTCGCCAGGCAACCTTCATTCATCACCAGGGCTTGTGGTTACCCGGGCGATCCTCCTTTGAGCTGCACAGCCAGAAGGGTGTCttcattacactcacacacacacatgcacgtgcACAGAGCTACGACAACTCATACTTTTTCAAGGCCAGCAGCAGTTTTACCATTGAGGAGAGCAGTTTTGTGATTCCTTATCGACTGATGTGTGAGTGGAAGTACCATGCATGTGCCAGCGCATGtgtaaaaacatgcagtgaTCCTGATGCCACACGCTGCCAGTTCTTGCCTCTggtggaAGGCTGTTTCCCCCGCTGTCCGAAAACCATGGTGCTGGATGAAGTCACGAGGAGGTGTGTGTACCTAGAAGACTGCATAACACTTTCACCAACTCCTACTCCTTACATGTTTGTGACTCGATCTAACAGAACCACCAGAGCTCCTACCACGATGATTCCGACAACTGTGACTACAGCCCCGACCACCACAACTACCATGACTGCTCCCACAACGACCACAACGACCACTCCTCCCACCACTGCAGGCACCACTAGCACGACTGCGGCTCCTACTTCAGCCCCCACCACGTCTACCTTTATTACAACAACTCTTGAAATTCTTACATCCTCTCCACCAATCACAGAAAGCCCTTTTGTTACCTCAACCATGCCCACCACTAAGCCAACCACACCACCTACAACTACCTCTGTTACCACTACATCACCGCCACCCACCACTACAGAGATCTTGACCACAACTGAGGAAACAACCACTTCCATCATCACTACCACAACTCCTTTCACCACTCATCCCATTACAACAACAACCCCTCTTATCACCACAGAGATGGCCCCTGTTTCCACGGTAACCGAGGAGGACTTTATTTTGACGTCGACAGCAGGAACACCCCCAGAGCCAACATCCACTGCCCCCTCCTTGTCTCCCACAACGCTCAGACCAACAACCACCCTTCCTGCATTCGTGATCCCCACTGGACCCTGCACGCCTCCATTCTCTGTGCGAGTTGATGAGTGCAGTGAGTACATTTGCTTTAATGGGCAGCTGATGCTATACAACTCCTCCCAGCACTGCAGATTCAACATCACCCAACCGCAGTGTAACCTACTGGGCATGCCCATTCAGATCAACACAGACCCCTGCTGTCCACTGTGGCGCTGTCCCTGCCGCTGCTCTATAATCTCAGACCTTCGTGTGATCACGTTTGACGGGAACAATGTTGCTCTGTATGATAACGGCTCCTATATACTGGTTCACCTGCCTCGAGAGCACATTGTTGGACATGTCGAGAAATGCCCCACCAGTGAGagtgTGAACTACATTAGACGACCTaCTCCTACAGGTGGAACCTCTGGCCTATGTTTTAAGAAGTTGAACATAACCACTCATGCCTACAGGATCATGATCAGTCGCCTTGACCGCAAGGTATCTGTGAACCAGATCACAGCTCGGCTGCCATTCACCAGATTAAACCTGCATATCGATGACACAGGGACCATGTACATCATTCACACCCCCAGTGGAATCAGTATCCAGTGGTACCACAGCACCGGCATCATGGTCCTACAGTACGGCGCCCCTGATAACACCTCCACCAGAGGCCTCTgcgGCTGCTGTGACGGTAACCCAGCAGATGACTTACGTTTGCCCAACGGGACTGTGATGCGAAACGTGGAGGACATCCCTGTGTTTCTTCACAGCTGGATGGTGGACACATCCGAGGAGACGGATTACTTCCGGAGAGTGGGAGACAACTGCACCACGGGaaactgcacaaaatgttttcaaatgctCAACCAGAGCCCCTTCTCCAAGTGTCACCACAAGgTTTCACCAGAGCAGTTCTGTGACAAAATCTGGGCAGGTGACCTACACTACAAGGAGCACGAGTGTGACTTTCTTGCTGCTTATGTGGCCATCTGTTACACTCACCAGATCTGCTTCAGCTGGAGGACAAGCAACTTCTGCCCTCTGAAATGTCCTCCTGGTAAAGAATATAAGCCATGTGTGAACACATGCAAGACGATGACGTGTCAGAATCGAGATTATTATGAGGAAAGCACCTGTTCCTCCATTCGAGAGGAGTGTGTATGTAAGAGTGGTACCATCCTGCACCGAGCCGACTCCGCATACTGTGTCACTGAGGACCAATGTGTGTGTACGGATAACGATGGTTCGCCGCGGGCCCCAGGGGAGGTGTGGAATGGTTCTCTGCGAGGCTGCTGTCTGTTCACCTGCCTGGAGAATGGCAGTGTCGTCCCGGTGGAGCCCGAGTGTCCTCCTGAGCCTGCCCCTCTGTGTGAGCGTGAGGGCGAATACTACATCGATGTGCTGGAAGAGGGTGCTTGCTGCCCAAAAAAGATTTgcgAGTGTAACATAACCATTTGCCAGAATGACATTCCTTCCTGTGGGATTGGGAACAAGCTGGTGATTGGCTATAGCACCCTCTCCTGCTGTCCCGAATATCGATGTGAATGTGATCCACTGTCCTGTCCCAGTGTCCCAATGCCAGAATGCAAAGAGGACCAGTTCTTGGTGGAGGTCAGAGGGCAGCATGCCTGCTGCTATAACTATCTATGTGTGTGTGAGTCTTGTATGGAGCCCATCCCAGTATGTCTGCCTGGAGAGATTCTGGTTGTGGATATGAACACTACTCATCATTGCTGCCCCCATTATCGCTGTGtgtgtgatgtgagccTGTGTCCTGAGCCCAGCATTAGCTGTGTTACTGGTACTGCACTTGTTAAGACGCCTGTACCTGGCAGCTGCTGTCCAGACATTCACTGTGagtgtcagtgtgacaGTATTGCACGGCCTCAGTGCACTGTGGGAGAAATTCAAGTGGAGGAGCCAGATCACAGCAGTACCTGTGGCTGCATTCAGTACTTGTGCaAGAAGGCAGATGTATGTTTATTTCAGGGAGTGACTGTGCTGAGTCCAGGCCAGTCCATGGTGCAGTACGTTGAAGGAGAGCTGTGCTATACTGTGCAGTGcctcacacacagagacccCAGCACCGGTTTCTATGCCATGGATGTGACCACTTCAAACTGCTCTGAAAAGTGTGAGCCTCACCAGGTGTATGTCCCGTCCTCTGACCCGCATGTGTGTTGTGGCTCGTGTAAAAACGTCTCATGTTCATTTACCAGTGAGAACGGAACTACAGAAGTATTTACGGCAGGTAGCTCTTGGGTGTCTAATTGCACACGTTTCGACTGCATTGAGACAGCGGTGGGAGCGGTGATTCTCGCCTCTGGAGTCGTCTGCCCTCCGTTCAATGACACAGAGTGTATTCAGAATGGTGGTGTGGTGCAGACCTACGTTGATGGCTGCTGCAAGACATGTAAAGAGGATGGTAAAACATGCAAAAGAGTTGCCATCAGGACCACTATCAGGAAAGATGACTGCAGAAGTAATGCACCAgtaACAGTATACTCCTGTGATGGGAAGTGTCCTTCTGCCACCATATTTAACTTCAACATAAACAGCCATGCACGTTTTTGCAAGTGCTGTCGTGAAAATGGCCTACAGAACCGCGTCATCCAGCTGTACTGCACTCGCAATGCTACTTCTGTGGAATACAACTTCCAGGAGCCGATGGACTGCTCATGCCAGTGGAACTAATAACTGATACCAGTTTGTAGATGTGCAGTACCTTGGCATTTTCATCTCTATATACCCTCTCAGTGGACGTGCTCAGTTAATACCACACAGATCAGTACAACCACAAACTACTAActccatatttatatatatattttaaattctgaatTAACAATCTTGGGAATATTACATAATCACGTAGTCAGTAGATGAATGTATGACTAATAATCAGTCAGCTTATATATGtcaatatataaggaataataaaagaaataatgtaTGTGCCCAAGTACAGGTTATTAATATCAATATATCATGCAGTTTTGTTtctcaaaaatattttgaagCAAAATTGATTCTTGCACCTTGCATGTAATTAAGTAACCTAGGTAAGTCAGTAGTATTTTAGATGCcttttcagatttttgtatcttttttaacctcttgttttatttaagaaataactGTACTTTTTGAACAATTTGCcatcaacattttttaaaaaacacttaaacCCCCTACagggataaataaataagccagATTTGTGAAAGTCTGAATTCTATTAAACTGAAAA

Function

GO: NA

KEGG:

id description
K25030 OTOG, OTOGL; otogelin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402778.1 lncRNA downstream 473616 27188342 ~ 27188792 (-) True LOC113526487
XR_004578372.1 lncRNA downstream 517534 27143707 ~ 27144874 (-) True LOC117597606
TU125118 lncRNA downstream 533236 27123277 ~ 27129172 (-) True G105842
TU125109 lncRNA downstream 554837 27105368 ~ 27107571 (-) True G105835
TU124929 lncRNA downstream 786574 26875595 ~ 26875834 (-) True G105666
TU125590 lncRNA upstream 70361 27779132 ~ 27781800 (-) True G106193
TU125592 lncRNA upstream 153069 27861840 ~ 27905029 (-) True G106195
TU125660 lncRNA upstream 236045 27944816 ~ 27945033 (-) True G106258
TU125661 lncRNA upstream 244747 27953518 ~ 27953990 (-) True G106259
TU125662 lncRNA upstream 245493 27954264 ~ 27954479 (-) True G106260
XM_026914021.2 mRNA downstream 3571 27602226 ~ 27658837 (-) False ptprq
XM_026914020.2 mRNA downstream 3571 27602226 ~ 27658837 (-) False ptprq
XM_026914019.2 mRNA downstream 3571 27602226 ~ 27658837 (-) False ptprq
XM_026914018.2 mRNA downstream 3571 27602226 ~ 27658837 (-) True ptprq
XM_026914196.2 mRNA downstream 104438 27546497 ~ 27557970 (-) True wash1
XM_026913635.2 mRNA upstream 25568 27734339 ~ 27768803 (-) True si:ch73-386h18.1
XM_026913966.2 mRNA upstream 73050 27781821 ~ 27823226 (-) True glg1b
XM_026913968.2 mRNA upstream 73050 27781821 ~ 27823225 (-) False glg1b
XM_026914381.2 mRNA upstream 116553 27825324 ~ 27846822 (-) False wdr59
XM_034305151.1 mRNA upstream 116553 27825324 ~ 27846822 (-) True wdr59
TU125182 other downstream 505268 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 1054079 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 1421403 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 2113480 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 1993381 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 2634760 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 3021187 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 3107808 30816579 ~ 30819614 (-) True G107803

Expression Profile