RNA id: XM_034304999.1


Basic Information

Item Value
RNA id XM_034304999.1
length 2854
RNA type mRNA
GC content 0.51
exon number 24
gene id LOC113524886
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30987255 ~ 31068479 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGGATTACCGACTCTGGAGTTCAGTGACTCGGTTCTGGACAGTCCGGCCTTCAGAGACACACTGAAGAACCACGAGCTCGAGCTGGAGAACACCAACAAGTTCATCAAGGAGCTCATCAAGGACGGGAACGCGCTTATAGGCGCACTGAGAAatctGTCTGAATCTGTGCTGAAGTTTGCTCAGTCTCTGCAGGAGTTTCAGTTCGAGTGCATCGGTGATGCTGAGACCGACGACGAGGTAAACATCGCTCAGTCTTTTAAAGAATTCTCACAGCTGCTGAacacagtggaggaggagagacGCCGCCTCATCCAGAATGCTGACGACGTGCTCATCACACCGTTGGAGAAATTCCGTACGGAGCAGATCGGAGCGGCTAAAgaaggaaggaagaagttCATCAAAGAGAGTGAGAAGTACTACTCATCCCTGGAGAAACATCTCAACCTGTCTTCAAAGAAGAAGGAGTCGTTGCTCCAGGAGGCTGATGCTCAGATCgataaagagaggctgctgtTCTATGACGCCTCACTCGAGTATGTCTTCAAAATCCAGGAAGTGCAGGAGAAGAAGAAGTTTGAGTTTGTCGAGCCGCTCCTGGCCTTCCTACAGGGTTTATTCACTTTCTACCACGAAGGATATGAACTGGCTCAAGAGTTCGAACCTTATAAACAACAGCTCCAGTTCAACCTGCagaatactCGGAACAACTTCCTGAGCACTAAGCAGGAGGTGGAGAAACTGATGAACAGAGTGAGATCTGCGGATCAGGACCAGAAACCACCAGGACAGTGGACCATGGAGGGCTACCTGTACATCCAGGAAAAACGACCTCTGGGCTGTGCCTGGACACGACATTACTGCACTTATGATAAAGCGAGTAAGACCTTCACCGTGACCAACACCGAGACCAAGACCACCAACAAGCAGAGTGACGTGGTGTTAAACCCACCTGAAGTGTTCAAGCTGAAGTCGTGCATCAGGAGAAAAACAGACTCCATCGACAAGCGCTTCTGTTTCGACGTGGAGGTGGTAGAGAGacatgGTATCATCACCTTGCAGGCTCTGTCTGAATCTAACAGGAGGATGTGGCTGGAAGCGATGGACGGCAAAGAGCCAATCTACAACCTGCCTGCAGTCCTGAGCAAGAAAGACGAGACTCATCTGAACGAAGCCGGCTTTAACTttgtgaagaagtgtgtgagcGTGGTCGAGGCGAGAGGCATTAACACGATGGGACTTTACCGTATCGGAGGAGTGAACTCTAAAGTGCAGAAACTGATGAACACCGTCTTCTCACCGAAAGCTCCAGCAGACGTGGACCTGGACCCTGAAATCTGGGATAATAAAACCATCACCAGCGGCCTGAAAAATTACCTCAGGTGTCTCACTGAGCCGCTCATGACCTACAGACTCCATGCGGATTTCATCACTGCTGTCAaatcAGATGATCAGAATTACAGAGTGTGTGCTGTTCACGCGCTGGTCCATAAACTGcctgaaaaaaataaggaaatgcTGCAGATTCTCATAAAACACCTTCTTATTGTTTCCTCCCACAGTAAGACCAACATGATGACGGTGTCGAACCTGGGCGTGATCTTCGGTCCCACACTGATGCGCTCTCAGGAGGAGACGGTGGCTGCCATGATGAACATCAAGTTCCAGAACGTGGTGGTGGAGATTCTGATCGAGAACTTTGAGAAGatctTCCACCAGACTCCAGACCCCAACGTTCCCCTGGCGCAGCTTCACACTCGGCCGGAGTCACGCAGGAACAGAGCCATCTGTCTCTCCACAGGAGCTCGCAAACCCAAACCCCCGtacacacactcgctgtgtgtcgctGACGCAGACAgtgacaCATTCAGCAGCAGCTCCTGCAGCACTGCGATGGGCAGCATGGAGTCGCTCTCGTCTCACTCGTCAGAGCAGAACGTGTCCAAACGGAGCTCCTGCGCTCTGCATAAAGAGAAGCCGTCGTTCCCGTCGTCTCTGTCCTCCAGCGGGCCCCGGGGCCGGGACTCGGGCTCCAGAGAGGACGCGGGGCGGGCGGATGGAGACTCGGAGGACTCGTACAGCTCGCCTGCTCTGAGGAAATCTCACAGAAATGTCACACAGAGCTGCGGAGCTGCGCTGAGATCAGACCGATCTGTCCAATCACTCCACAGCACCGACGagaaacagactgaTGGCGTCCTGCGTCCCGACCTGCCGCCCAAAATGCCCCAGCGCCAGCGTCAGGACATCGGCTCTAGCAGCGGCTACCAGAGACCAGTCTCAGTaGTGGCGGCGAGAGCGCTGATGTTCGAAAGTCCCTCGCCGTCGACACAAACGGGACGAGACGCGAAGGCGATATACTCCTGTGAGGCGGAGCATAGCAATGAGCTGAGTTTCCCCCAGGGGGCGCACTTCTCGAACGTGTACCCTTCAGTGGAACCCGGCTGGCTCCAGGCCACGTACGAGGGCAAAACAGGACTCGTTCCCAAAAACTATGTGGTTTTCCTCTGAGCCCACACACGGAGACGTCATCGAGCATTTCCTGCTGGAGCAGAGATTGTGTAGCGGTCATACTTGGCTGTAACACTCGGTGTCTGTGCAGTGAAGAGCTGTATAAACTGTTCTGCTGTCCTTCAGCCTCATGATGGTTTTAgcataaaaaaatcttacagcattataaagttttataaCCTTTTATTCACCTGTAGTgcttttttacctttttttaatctgtaatgAAAGATTGTGCCTTGTTGAATCTGGTAATAAGTAGGTTTTATAACTGTTTcatctttacaaaaaaaaaaaacaagaaatttaAGTGAATGCAGATCTGCTGACCTTCACACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578353.1 lncRNA downstream 79234 30900565 ~ 30908021 (-) True LOC117597590
TU127458 lncRNA downstream 137571 30845729 ~ 30849684 (-) True selenot1b
TU127476 lncRNA downstream 143763 30835634 ~ 30843492 (-) False G107806
TU127657 lncRNA upstream 205043 31273212 ~ 31273477 (-) True G107967
XM_034305067.1 mRNA downstream 20126 30961366 ~ 30967129 (-) False gemin7
XM_034305068.1 mRNA downstream 20154 30961363 ~ 30967101 (-) False gemin7
XM_034305066.1 mRNA downstream 20235 30961363 ~ 30967020 (-) False gemin7
XM_034305069.1 mRNA downstream 20280 30961363 ~ 30966975 (-) True gemin7
XM_034305388.1 mRNA downstream 57055 30919185 ~ 30930200 (-) True LOC113524890
XM_034304944.1 mRNA upstream 39521 31107690 ~ 31236932 (-) False cntn5
XM_026911248.2 mRNA upstream 39521 31107690 ~ 31236932 (-) False cntn5
XM_034304941.1 mRNA upstream 39521 31107690 ~ 31236932 (-) True cntn5
XM_034304942.1 mRNA upstream 39521 31107690 ~ 31203695 (-) False cntn5
XM_034304943.1 mRNA upstream 39521 31107690 ~ 31195457 (-) False cntn5
TU127465 other downstream 167641 30816579 ~ 30819614 (-) True G107803
TU127397 other downstream 255224 30729958 ~ 30732031 (-) False bbs10
TU127077 other downstream 642379 30343531 ~ 30344876 (-) True G107525
TU126682 other downstream 1273263 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3830115 27152312 ~ 27157140 (-) False si:dkey-151j17.4

Expression Profile