RNA id: XM_034305069.1


Basic Information

Item Value
RNA id XM_034305069.1
length 1012
RNA type mRNA
GC content 0.51
exon number 4
gene id gemin7
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30961363 ~ 30967129 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCTGCAGCTCCGCGGCTAATGggttacatttattaatgtgtttaatgtgttcatgtgtttaatgtgttcatgtgttaAGTGATGGATGGATTAGGAGTGACAGCTGTAACTGCAATTAAACCTGACAGAATCGAGATGAAGAACCCGGTGAACGTGTTGCGCTTGCCCAGAGGTCCGGACCCCAACAGCCGCGGGTTTGACCCCACCTCACCCCGGTACATTGCGCTGTGTCCCTCGTCCATCCCGGCGTCCACCGCGAGCAGTACTGACCTCAAGAGCATCGAGGAAGAGCAGAGATTACGCACAGAGCTGCGAGAACGGTTCCTCAGGACTCTTATAGCCATGACGGACAAACAGGTCCACTTCAGCATGTACGAAAAAGTTCACGTGCAGGCGAAATTCGGAGCCTCAGACATCGACGTGCTGAACTTTCAGGTTTCTGATCTGCAAACACCTCTGGGCGTTCAGAAGGAGGCGTTACTCCGGTGTCAGGACGTGATCTCATGCTCGTTTGACTTTTCCTGGATCTCTAACACACCTCACCCAAGCAGTGGAGAACCCTGATTACCTGGAAGGAGTGCTCTGGGATCTGAGAGGTTCTTCAGCGGCGTCAGGAGAACCAGCTGATTTCAGCAAGACATTCCACTCTGAAGTGTCATTTGGGTTCTAGATTCTGGGTTCTCTCcaaagattttttatttctgttcctGAGTGGTTCGCCTGCAGCTCCGAGATTTGCGGTGTAaaaacactggtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttggatggTACAGGGAATCTGCCCTGGCCAACAGGAAGTACATTCCAGTGCGTCCTGTTTGTGGCCGTCTCTGTCTTCCTGCTGGAGCAGAACCGAGTCTGTGATAACCTACAATAATACATCAGCACCGGCACTTAATCAAGACAGAACACACTGACCTCAGATCAGACCACAGACACTGAATCACGACCtgctgccctgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0032797 SMN complex cellular_component

KEGG:

id description
K13135 GEMIN7, SIP3; gem associated protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578353.1 lncRNA downstream 53342 30900565 ~ 30908021 (-) True LOC117597590
TU127458 lncRNA downstream 111679 30845729 ~ 30849684 (-) True selenot1b
TU127476 lncRNA downstream 117871 30835634 ~ 30843492 (-) False G107806
TU127503 lncRNA upstream 29298 30996273 ~ 30998215 (-) False LOC117597523
TU127506 lncRNA upstream 29298 30996273 ~ 30999390 (-) False LOC117597523
TU127507 lncRNA upstream 29298 30996273 ~ 30998215 (-) False LOC117597523
TU127508 lncRNA upstream 29298 30996273 ~ 30996588 (-) False LOC117597523
TU127509 lncRNA upstream 29298 30996273 ~ 30999390 (-) False LOC117597523
XM_034305388.1 mRNA downstream 31163 30919185 ~ 30930200 (-) True LOC113524890
XM_034305070.1 mRNA downstream 63273 30857929 ~ 30898090 (-) True ppp1r37
XM_026911251.2 mRNA downstream 104216 30850404 ~ 30857147 (-) False LOC113524884
XM_034304998.1 mRNA upstream 20280 30987255 ~ 31068479 (-) True LOC113524886
XM_034304999.1 mRNA upstream 20280 30987255 ~ 31068169 (-) False LOC113524886
XM_034304944.1 mRNA upstream 140715 31107690 ~ 31236932 (-) False cntn5
XM_026911248.2 mRNA upstream 140715 31107690 ~ 31236932 (-) False cntn5
XM_034304941.1 mRNA upstream 140715 31107690 ~ 31236932 (-) True cntn5
TU127465 other downstream 141749 30816579 ~ 30819614 (-) True G107803
TU127397 other downstream 229332 30729958 ~ 30732031 (-) False bbs10
TU127077 other downstream 616487 30343531 ~ 30344876 (-) True G107525
TU126682 other downstream 1247371 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3804223 27152312 ~ 27157140 (-) False si:dkey-151j17.4

Expression Profile