RNA id: XM_034305190.1


Basic Information

Item Value
RNA id XM_034305190.1
length 5164
RNA type mRNA
GC content 0.49
exon number 41
gene id LOC113526366
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25839470 ~ 25870271 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATAATCCGCGGGGATTAGGAGCTCCAGCAGTGCTGTAGGTGGTTGGATGTACTTCAGTCCATGGTGGAGTTGGGGAAGCGCAGCGCGCGGAGCTTCTCTCCAACATGATGCACGGATACAGAGCGaCTCCAGTCTCCAACAGTACCCTGTCTTTCTGTGGTACTGATAACTCCTCTGCCTATAAGGTGGATAATGGGCTTCTGAATAACGGCTGTTTCCTGGATGCTCTGGGGCTTGTGCCACACGTCTTCCTCCTCTTCAGCACTTTCCCCATCCTCTTCATTGGTTGGGGCAGCCAGAGCTCTAAGGTTCATATCCATCACAGCACATGGCTGCATTTCCCTGGCCATAACCTGCGCTGGTTGCTCACAGCTGCTCTGTTGTTTGTGCTGGTGTGTGAGGTCGCTGAGGGGATTGTCTCAGATGGGTTTAACCAGTCCCGCCATCTTCATCTTTATATGCCTGCTGGACTTGGCATTCTGGCAGCTATAACCTCCATAGTCTACTACCACAACATAGAGACCTCCAACTTTCCCAAACTTCTGTTAGCTCTGCTCATCTACTGGATTTTGGCCTTTGTCACCAAAACCATCAAGTTCACTAAGTACGATGAACACGGAATCGGCCTGGGGCAGCTGAGCTTCTGCATCACAGGCTTGCTGGCTTTAATCTACGGCCTGCTGCTGACCGTGGAGATCAGCGTTATACTGCGCAGGCGCTACATATTCTTCCCACACCCGACTGAAGTGAAGCCTCCTGAGGACCTGCAGGACCTTGGTGTGCGTTTCCTTCAGCCATTCGTCAACCTGCTGTCCAAGAGCACATATTGGTGGATGAACACATTTATCACATCGGCTCACAAACGGCCCATCCACCTGAAAACCATCGGCAAGCTGCCCATAGCTATGAGAGCGCTCACCAACTACCAGAAGCTACGCAAAGCCTTCAGTGCACAGAAGgagCGAGGCATGATCCCTGCACGAAGCCCACGATCGATTTGGTACGCTCTGAGGCAGGCGTTTGGAGGCCCTCTGCTCCTCAGCATCACTCACCGCTTCCTGGCCGACCTGCTGGGCTTCACTGGGCCACTCTGCATCTCCGGCATCGTCCACCACATCAGCCGAGATAATCACACCATCAAGCCACCGgtcaAGCTGCTAGGCATCCACTTCATTTCCTCTCAGGCATTTTTAGCGAATGCCTATGTGTTGGCAGTGCTGTTTTTCCTAGCTCTGCTCCTTCAAAGGACATTCCTACAGGCTTCCTACTACGCCGCCATGGAGACCGGCATTAAAATCAGGGGAGCCATCCAGtgtaAGATCTACAATAAGATCATGTGCCTGAGTACCTCCAACATGTCCATGGGAGACATGACCATCTCTCAGATCTGTAATCTGGTGGCCAGAGACACGGAGCAGCTCATGTGGTTCTTCTTTCTGTGTCCCAACCTGTGTGCCATGCCAGTGCAGATCACTATTGGCGTGATCTTGCTATACTACTTACTGGGGATCAGTGCTCTGATTGGAGCTGCAGTGATCGCCATTCTCGCCCCGATGCAATACTTCGTGGCCACACAGCTTTCACGAACTCAGAAAAGCACACTGgagtACTCCAGTGAGAGACTGAAGAAGACTAATGAGATGTTGAGAGGCATTAAGCTGCTGAAATTATATGCCTGGGAGCACATCTTTAGATCCAGTGTGGAGGAGACGAGAAAAAAAGAGCTGACCAGCCTCCGAGCCTTCGCCCTGTACACATCACTCTCAATTTTCATTAATGCAGCCATTCCCATCGCAGCGGTTCTTACAACATTTGTAGTACATGCCTATGTACACAGCTCTACAgacactcctctctctcctgctgtgGCATTtgcttctctctcactctttcacatCTTGGTCACGCCCCTCTTCCTGCTTTCTAGTGTACTACACTCAACTGTTAAGGCACTTGTAAGTGTGCAGAAACTTAGCGAATTCTTTGCTAGTGAAGAGATTGAACTTGATCAAGAACCCAAGACCCCCACCCCAACTGATACAAGCAACCACAGTAACATAAATTCAGTTTACATGCTGCAGCTCCAGGCCTCAAAGCTGGTTAACCGGAAGAACAAAGCCAAACAGGACAAGAACAGTAAGATACCACAGCAGGATCCGAACCTGAACATGTCTATTGTAAATGAGGAGAATATCTGTCTCAAGatcGTGAATGGCTACTTCACCTGGACTCAGGGATGTCCCACTCTGACCAACATTGACATAAAGGTTCCTTTTGgtgCGTTGACTATGATTGTAGGACAGGTAGGATGTGGAAAATCCTCCCTACTGTTAGCTGCTCTGGGAGAAATGCAGAAGATCTCAGGAAGTGTCACATGGAACAAATTACCAGatcaggaagaggaagagaataaCAGGTTGCTTGTTAATCACGTTACTGGTCCAAAAGCACCCGAGAAGAGAGCTTCGGTGGCCTACGCTTCTCAGAGGCCATGGCTCCTCAATGCCACAGTGGAGGAGAACATCTTGTTCGACATGGCCCCTAACAAGAAAAGGTATGCAGAAGTGATCGAGGCATGCCAGCTTCAGCCTGATATCGACACACTTCCCCAAGGAGACCAAACCGTGGTTGGAGAAAgggGCATTATTCTGTCTGGCGGGCAGCGGCAGCGCATCAGTGTAGCCAGAGCTCTTTATCAGCAAACTAAAGTGGTGTTTCTGGATGACCCATTCTCAGCTCTGGACATCCACTTGAGTGACCACCTGATGCTGGAAGGAATTCTGAAGTTCCTCAGACAGGAGAGAAGGACGGTGGTTCTGGTCACACATAAACTGCAGTACTTACCACATGCAGACTGGATCATAGCCATGAAGGATGGGACAGTCCAGACACAAGGCACCTTAAAGGATATCCAGTGTGCTGAGCCTGAACTGTTTGAACACTGGAAAACCCTGATGAACAGACAAGACAAGGAGAACGCTGTGGAGCTGAAGAGGAAGAGTTTCCGGAGGATGTACTCCAGAGACACACTTGCTAcagaggatgaggatgaagATGGTTCCCTGTGTACAGATGAGGACAGCCTGACAGTTGAATTGCATCAGAGGAACACAATGCTATGGGGCTCATTGGGGACATACCTGCGAACAGCTGGCCTCCTGCTGCTTCCACTGCTCATCCTGTCACAGCTCACCAAACACTCACTCATGCTGGCGATAGACTACTGGCTCGCCCACTGGACGTCTCAGGCCATCACAGCTCGGAACTGCACATCTGCACAGGACTGTGTGCAGAGTCATTCTCTGTACCCGCGGGTGTTCTGTATCTTGTGTTTTCTGGGTATCGTGTTATGTTTGATCACCTCTCTGGCCGTGGAGTGGATGGGACTCCGGGTCGCTCAGGAGCTCCACTGCAGTCTTCTCCGTATCATCATCCTCGCTCCGATGAGGTTGTTTGAAACGACTCCTCTTGGGAATATTCTTAACCGATTCTCTGGTGACATCAACATCATTGATCAGCATATCCCGGTTACCATGGAGTGTTTGATCCGCTCcactctgctgtgtgtgtcgGCGGTGGGTGTTATATCCTACATCACCCCAGTCTTCCTCATCGCTCTGCTCCCACTGGCCATCATCTGCTACTTCATTCAGAAGTACTTCCGGGTGGCATCCAGggATCTGCAGCAGTTAGAGGACAGCACCCAGATCCCCCTGCTGTCCCACTACTCAGTGACTGTAGAGGGTCTCACCACCATCAGAGCCTTCAgACACGAACAAAGATTTAAGAAGAGACTTTTGGAATACACAGATGCCAATAACATCGCCTCACTCTTTCTCACAGCAGCCAATCGCTGGCTCGAAGTTCGCATGGAGTACATCGGGGCGTTTGTGGTGCTGATAGCTGCCGTGGCGTCCATCAGCAATGCCCTGTACAGTGAGCTCTCCGCTGGATTAGTGGGTCTGGGCCTCACATATGCTCTCATGGTGTCGAACTACCTGAACTGGATGGTGCGTAACCTGGCTGATATGGAGGTGCAGCTCGGCTGTGTGAAGAGGATCAGCAGTCTGCTCACCACAGAGTCTGAGAACTACAATGGAGAAATGACTCCAGCCCAGGTTCCAGCAGGTTGGCCCAAATATGGCGAGATCCAAATAAAGAACCTGAGCGTGAGATATGATAGCAGCTTAAAACCCGTCCTAAAGCGTGtcaatgctcacatcaaacctGGACAAAAGGTGGGGATATGTGGACGAACAGGAAGTGGAAAGTCTTCCTTCTCCTTGGCTCTTTTCCGAATGGTTAACACGTGCGAGGGTCGAATTATTATTGATGGGATTGATATTGCTAAATTGCCTCTTCAAACCCTGCGCTCCAAATTTTCCATCATTCTTCAGGACCCCATTGTATTCAGTGGAACAATTCGatttaatCTGGATCCAGAGAAGGCCACTGACCGGATGCTGTGGGAAGCTCTGAATATCGCTCAGCTCACACCCGTGGTGGAAGCTTTACCTGGAGGACTAGATGCCATGGTGACGGAGGGAGGAGAAAACTTCAGCCAGGGGCAGCGGCAGCTCTTCTGTCTGGCCCGAGCGTTTGTGAGGAAGAGCAGCATCCTGATCATGGATGAAGCCACAGCGTCTATCGACATGGCCACTGAGAACATTCTACAAAAAGTGGTTATGACTGCTTTTGCAGATCGGACGGTTGTAAACATTGCTCATCGTGTGCACACCATCCTGGGCTCAGACGTGGTCATCGTGATGAAGCGTGGAGCCATTCTGGAATACGACAGACCCGACGTCCTGCTGGAGCAGAAAGACAGTGTCTTCTATTCTTTCGTCAGAGCAGACAAGTGAGAAAGGCAAGGAGGAGTGTGCATGTCATGAGCAGGGCAGGACAAAGGGATTTTACTATGATctgtatataatttgtaaatgtttaattactGACAGATAATATGAACCTTGGAACCAATAATAAACCTTTCAAATGGTTCCAATATAAAACCAGTTTCCTACAAAACTCTCCAATAAAGAACTCTTTAATCATTACTTCACTTTTACTGTTACTGTCGCTATGAATTGCTAGTAGAAATGACGTGAACAACACAGGAATtagtgacattttaaatattttattagggTATAATTTGCAgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124309 lncRNA downstream 3432 25833279 ~ 25836038 (-) True G105092
TU123932 lncRNA downstream 594226 25243472 ~ 25245244 (-) True G104750
TU123936 lncRNA downstream 595453 25243472 ~ 25244017 (-) False G104750
TU123929 lncRNA downstream 597700 25239110 ~ 25241770 (-) True G104747
XR_004578344.1 lncRNA downstream 624680 25192057 ~ 25214790 (-) True LOC117597583
TU124447 lncRNA upstream 217209 26087480 ~ 26087695 (-) True G105219
TU124618 lncRNA upstream 449761 26320032 ~ 26320770 (-) True G105379
TU124743 lncRNA upstream 712023 26582294 ~ 26608329 (-) False LOC113526510
XR_004578318.1 lncRNA upstream 727163 26597434 ~ 26608339 (-) False LOC113526510
XR_004578319.1 lncRNA upstream 727745 26598016 ~ 26608327 (-) False LOC113526510
XM_026913264.2 mRNA downstream 290542 25385325 ~ 25548928 (-) False si:cabz01090165.1
XM_026913337.2 mRNA downstream 492506 25344225 ~ 25346964 (-) True LOC113526369
XM_034305278.1 mRNA downstream 519777 25304736 ~ 25319693 (-) False LOC113526534
XM_026913764.2 mRNA upstream 20028 25890299 ~ 25905340 (-) True loxl1
XM_026914215.2 mRNA upstream 323779 26194050 ~ 26292607 (-) False cd276
XM_026914216.2 mRNA upstream 336678 26206949 ~ 26292607 (-) True cd276
XM_026913597.2 mRNA upstream 454110 26324381 ~ 26464945 (-) False zgc:158464
XM_026913596.2 mRNA upstream 454110 26324381 ~ 26464944 (-) True zgc:158464
XR_003402763.2 other downstream 290542 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other downstream 290542 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other downstream 354349 25385325 ~ 25485121 (-) False si:cabz01090165.1
XR_003402792.2 other downstream 1076689 24752612 ~ 24762781 (-) False clasrp
TU123617 other downstream 1128102 24623516 ~ 24711368 (-) True G104473
TU124615 other upstream 369059 26239330 ~ 26241005 (-) True G105376
TU124747 other upstream 698814 26569085 ~ 26608329 (-) False LOC113526510
TU125182 other upstream 1282041 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU126682 other upstream 3831881 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 4473260 30343531 ~ 30344876 (-) True G107525

Expression Profile