RNA id: XM_034305526.1


Basic Information

Item Value
RNA id XM_034305526.1
length 8237
RNA type mRNA
GC content 0.49
exon number 48
gene id myo7aa
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23455693 ~ 23504297 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTAGTTTCAATATAGATCTATGGAGCAGTGGCTAGAACACACTGTGCCTTTGTGTCTGTGCGTGTAAGTGAGGAGATCAACTAGGACTCAACTAGGAAACTTCTGAGATCTGcctgttctgtttttgtttttatttttactccacTGCAAGAGGAAGACGTCGGGATTTAGTGCAGGTTTCAGCTGGCCCGCTTGCTGAGTTGAAATGGTCTTTATTCCACACAGCTGCATGACAGACACCTGCTAGggaagtgtgtatgtgagcgtGTTATTTGGAATACCAGGctaaacacttcaggactttTTGCCGCATGTATGGATGAGAGTTTGCTCAGTGGAGGATGTTTAAGCGACGGGATTATGTTGAGCTCTACCAGCAGGACCAGGCAAAGTGGACACTGTTGAGGAATGTCAACACAGTCTTCAAACAGACCACTCTGCTACCGGGGGACTATGTGTGGTTGGACCTGAAGACAGGTCGGGAGTTCGAGGTCCCGATCGGTGCGGTGGTGAAGCTCTGTGACTCGGGGCAAATCCAGGTTCTGGATGATGAGGGCAATGAACACTGGATCTCCCCCCAAAATGCCACCAACATTAAGCCAATGCACCCCACTTCTATCCATGGCGTGGAGGACATGATTCGCCTGGGAGACCTGAATGAGGCTGGGATTCTCCGCAACCTGCTCATCCGCTACCGAGAACACCTCATTTATACTAATTGTGGAGGCAGGACATACACAGGGTCAATACTGGTGGCAGTGAACCCATACCAGCTGCTGCCCATCTACACAGCTGACCAGATTCGCCTCTACACCAACAAGAAGATTGGAGAGATGCCTCCTCACATCTTTGCCATTGCTGACAACTGTTACTTTAACATGCAGAGGAATAACAAGGACCAGTGCTGCATCATCAGTGGTGAGTCTGGAGCAGGGAAAACGGAGAGCACCAAGTTGATCCTGCAGTTTCTGGCTGCCATCAGTGGGCAGCACTCCTGGATCGAACAGCAGGTGTTGGAAGCCAACCCCATCCTTGAGGCCTTTGGGAACGCCAAGACCATCCGTAATGACAACTCAAGCCGATTTGGGAAGTACATAGATATCCATTTTAACAAGAGAGGAGCGATAGAAGGAGCCAAAATTGAACAATATCTGCTGGAGAAGTCCCGAGTGTGTCGACAGGCCCAGGATGAGAGGAACTACCATATTTTTTACTGTATGCTAAAAGGCATGACTCCAGACCAGAAGAAGAAACTTGGCCTGGGCAAAGCAACAGATTACACCTACCTCACTATTGGAAagtgcactgtgtgtgatgGCCGTGATGACCAGAAGGAGTACTCCAACATCCGTTCAGCCATGAAGGTGCTCATGTTTACAGACACGGAGAACTGGGAGATCTCTAAACTGTTAGCCTCCATTCTGCATATGGGCAACCTCAAATATgaagCCCGCACATATGATAACCTGGACGCCTGTGAGGTGGTGCGATCTGCTGAGCTTTCCATTGCTGCAAAGTTGTTAGAGGTTGACTCTAAGGACTTAATGAACTGCCTGACCAGTCGCACAATCATCACTCGGGGAGAGACAGTGTCCACTCCTCTGAGCATGGAGCAGGCCTTGGATGTTCGGGATGCTTTTGTGAAGGGAATATATGGACGCCTATTTGTGTGGATTGTTGAAAAGATTAACGCAGCCATCTACAAGCCTCCGTCTCATGAGCCTAAAGCCGTGCGCAGGTCCATCGGCCTGCTGGACATCTTTGGCTTTGAGAATTTTACAGTCAACAGcTTTGAGCAGCTTTGCATCAACTTTGCCAATGAAAACCTGCAACAGTTCTTTGTGCGACATGTCTTCAAGCTGGAGCAGGAGGAGTACAACCTGGAGAACATCAACTGGCAACACATCGAGTTCACTGACAACCAGGACGCGCTGGACATGATCGCCATCAAACCCATGAACATCATCTCACTCATCGACGAGGAGAGCAAATTCCCCAagGGCACGGACACCACCATGCTGAACAAACTAAACTCTCAACACAAGCTCAACACCAACTACATCCCACCCAAGAACAGCTACGAGACGCAGTTCGGCATCCAGCACTTCGCCGGCATCGTCTACTATGAGACCAGAGGTTTTCTAGAGAAGAACAGAGACACCCTTCACGGTGACATCATTCAGCTGGTTCACTCGTCCAAGAACAAGTTCATCAAGCAGATCTTTCAAGCTGATGTTGCGATGGGGGCGGAGACGAGAAAGCGTTCCCCAACTCTGAGCAGTCAGTTTAAACGCTCTCTGGAGCTGCTGATGCgcacactgagtgtgtgtcagCCCTTCTTCGTCCGCTGCATCAAGCCCAATGAGTACAAGAAGCCCATGCTCTTTGACAGGgagctgtgtgtgagacagctCCGCTACTCAGGAATGATGGAAACAATTCGGATCCGGCGAGCTGGATACCCCATCCGCTACACTTTTGTGGAGTTTGTGGATCGGTATCGTGTCCTCATGCCTGGAGTGAAGCCTTCCTACAAACAGGAGGACCTGAGAGGGACCTGCCAGAGAATTGCTGAGGCTGTCCTTGGCAGAGACGATGACTGGCAGATGGGAAAGACCAAGATCTTCCTGAAGGACCATCATGATATGCTTTTGGAGATTGAGAGAGACAAAGCCATCACTGACAAGGTCATTCTTATTCAGAAAGTCGTCCGAGGTTTCAAAGACAGGTCTAACTTCCTGAAAATTAAGAAATCAGCTCTTACTATCCAGAAGACTTGGAGGGGTTACTTCTGTCGGAAGAACTACGGGGCGATGCGTGCCGGTTTCTCACGGCTCCAGGCCCTGTACCGCTCCAGGAAGCTCTACCAGACGTACCATGTGACCCGGCAGAGGATGACCCTGTTCCAGGCTCGCTGTAGAGGCTGCATGGTGCGCCGGGCCTTCAGACACCGGCTCTGGGCCGTCATCACCATCCAGGCCTATACTAGGGGCATGATCGCTCGCCGTTTATACCACCGACTCAAAGGAGAGTACAAGCGGCGGCTGGATGCAGAGAAGATGCGCTTGGCTGAGGAGGAGAAGCTCAGGTACCAGATGAGTGCTAAGCGGGCCAAAGCTGAGGCCGAGCGCAAGCACCAGGAGCGACTGGCCCAGCTGGCACGAGAGGACgcagagagggagaagaaggagaaggaggaggcaCGCAGAAAGAAGGAGATGCTGGAGCAAATGGAGAGAGCTCGTCATGAGCCCGTCAATGACTCCGACATGGTGGATAAGATGTTCGGCTTCCTGGGAACCACAAACTCTTTTCCTGGGCAGGAGGGCCAGGCGCCAGCTGGGTTTGAGGACCTGGAGCGTACTCAGAAGAATCTGGAAGAAGATGATCTGGATGAAGCTCTTCCTCTccctgaggaagaggaggaggatctGTCTGAATATAAGTTTGCCAAATTCTCAGCCACCTACTTTCAGGGCACCAGCACTCACACGTACATGCGCAGGCCGCTCAAGCAGCCCTTACTGTTTCATGAGGATGAGGGAGATCAGCTGGCTGCGCTAGCAGTGTGGATCACAATTCTGAGATTCATGGGTGATCTCCCAGAACCAAAATATCATACAGCCATTAGTGATGGCAGTGAGAAAATCCCTGTGATGACCAAGATCTATGAGACGCTTGGCAAGAAGACCTACAAGAGGGAACTGCAGGCTCtgcagggagagggagagAATACCCACATTGAGAGTCATAAGAAGAACAGTGTGTGTCACAAGCTAGTGTCCCTCACCCTTAAGAAGAAGTCTAAGATAACAGAGGAGGTGACCAAGCGTCTGAATGATGGCGAGTACACGGTGCACGGGAACAGCATGCTTGAGGACCGACCCACATCCAACCTGGAGAAACTTCACTTTATCATCGGCAATGGCATCCTCCGACCAGGACTCAGAGATGAGATCTACTGTCAGATTTGTAAGCAGCTGAACCAGAACCCGTCGAAAAGCAGCCATGCTCGAGGCTGGATCCTCCTGTCCCTGTGTGTGGGCTGCTTTTCACCTACTGAGAAGTTTGTGAAGTATCTGAGGAATTTTATCAGTGGAGGGCCTCCAGGATATGCACCGTACTGTGAGGAAAGGCTCAGGAGGACGTTTGTGAATGGCACGAGAACACAGCCACCCTCCTGGCTCGAGCTGCAGGCAACTAAGTCTAAGAAACCCATCATGTTGCCTGTGACTTTCATGGATGGCACCACAAAAACACTGCTGACCGACTCCGCCACCACAGCCAAGGAGCTGTGTAACGCACTGGCAGACAAAATCAGCCTCCGAGATCGCTTCGGCTTCTCCCTGTACATCGCCCTGTTCGACAAGGTTTCATCTTTAGGCAGTGGTAATGACCACGTGATGGATGCCGTGTCTCAGTGTGAACAGTATGCTAAAGAGCAGGGTGCTCAGGAGCGAAACGCCCCCTGGAGGcttttcttcaggaaagagaTCTTCACACCCTGGCACGACCCCACTGAGGACGGAGTGGCTACCAACCTCATCTACCAGCAGATCGTACGCGGGGTCAAGTTCGGAGAATACCGCTGTGACAGGGATGATCTAGCGGAACTTGCCTCTCAGCAGTACTATGTGGACTACGGCTCTGAGATCCTGGTTGAACGTCTCCTCAGCCTCATTCCTTCCTACATCCCAGACCGGGAAATCAGCTCTGCCAAGTCAGTGGAGAAATGGGCCCACTTTATCATGGCAGCCCACAAAAAGGGTATTTACACACAGAAACGAGTCGACCCTCAGAAGGTCAGAGAGGAAGTGGTGGATTTTGCTCGATACAAATGGCCATTGTTATTCTCAAGATTCTATGAAGCCTTTAAATTTTCAGGACCCAGTTTGCCTAAAAATGATGTGATTGTAGCAGTGAACTGGACTGGAGTTTATTTTGTGGATGAACAAGAGCAGGTTCTTTTAGAACTCTCATTCCCAGAGATCACTGCTGTCTCTAGCAGCAGGGGCGGGAAGCTCCAGGGCCATAGCTTCACCTTGGCCACCATTAAAGGGGATGAATACACCTTTACCTCCAACAACGCAGAGGACATCCGAGACCTTGTGGTCACTTTCCTCGAGGGGCTCAGGAAGAGGTCGAAGTTTGTGGTAGCAATACAGGATAACCCAAATCCAGTTGGCGATGACTCGACATTTCTGAGCTTTGCTAAAGGTGACCTGATCCTGCTGGACCAGGACACAGGTGAGCATGTCATGACTTCCGGCTGGGCTCATGGGATCAACGACCGGACCAAGCAAAGAGGAGATTTTCCAGCCGACTGTGTGTACGTGCTGCCCACCGTCACCAGACCTCAGCCAGACACTGTGGCTCTGGTTACCATGACACCCGACCAGCGTCAGGAATCGCTGCGTGTGTCGCAGGTCACTATGCCTGAGAGTGTGGAGAGGGTGAAGCCATACACACTGGAGGAGTTCTCTTATGACTACTTCAGGCCCCCTCCTAAACACACGCTGAGTCGTGTGATGATCACTAAGAACCGTGGGAAGGACAAGCTGTGGTGCTGCACTCGGGAACCACTTAAACAGCCGCTGCTGAAGAAGGTCCTGGCTAACGAGGACCTATCACAGGACGCCTGCATGGCCTTCATCGCCATTATGAAATATATGGGTGATTATCCGTCCAAACGAACTCGCTCTGTGAACGAGCTCACGGATCAGATCTTTGAGGGAGCTCTGAAGGCAGAGCCTCTAAAAGATGAGATCTACTGTCAGATTCTCAAACAGCTCACTGAGAATCATGTGAAgtacaGTGAGGAAAAGGGCTGGGAGCTGCTCTGGTTGTGCACTGGTCTCTTCCCTCCCAGTAATGTCCTCCTGCCTCATGTCCAGAGGTTCCTGCAATCAAAGAAACACCATCCACTCTCCCTGGACTGCATGCAAAGATTGCAGAAAGCCTTGCGGAATGGCTCCAGGAAATATCCTCCTCACCTGGTTGAAGTGGAGGCTATCCAGCACAAGACCACACAAATCTTTCACAAAGTCTACTTCCCAGACGACACAGATGAGgcTTTCGAGGTCGAGTCCAGCACGAAAGCAAAAGACTTTTGTCTAAACATCTCTAGCAGGCTGTTGCTCAAGACCCCAGATGGCTTCAGTCTGTTTGTAAAGATCTCTGATAAGGTGATAAGTGTTCCAGAGGGTGATTTCTTCTTTGATTTTGTTCGCCATCTTACTGACTGGATCAAGAAAGCCAGACCTGCTAAAGATGGTATAGTGCCTTCACTGACCTACCAGGTGTTCTTCATGAAGAAGTTATGGACAAACACAATCCCTGGAAAGGACTCTTTCGCAGACTCTATTTTTCATTACTACCAGGAGCTTCCTAAATACCTTCGTGGTTACCACAAATGCTCCAGAGAGGAAGTCTTTCAGCTGGCAGCTCTAATCTACAGAGTCAAATTCGAAGACGACAAATCGTACTTTCCCAGCATCCCCAAAATGCTGAAAGAGCTGATCCCTCAGGATCTGATTCGCCAGCTCTCTCCTGATGACTGGAAAAGATCGATTGTGGCATACTTCAACAAGCAAGCGGGCAAGTCGAGGGAAGAAGCCAAGCTGATGTTTCTGAAGATCATTTTCAAGTGGGCTACTTTTGGATCAGCTTTCTTTGAAGTGAAGCAAACTACTGAGCCAAATTTTCCTGAAATCCTGCTAATAGCCATCAACAAGCATGGAGTCAGTCTCATAGACCCCAAAACCAAGGATATTTTAACCACTCACCCCTTTACAAAGATCTCCAactggagcagtggaaacacCTACTTCCACATCACCATCGGCAACCTGGTGCGAGGAAGCAAGCTGCTCTGTGAAACGTCACTGGGCTACAAAATGGATGACCTGCTCACCTCCTACATCAGCCAGATGCTGACCACCATGAGCAAGCAACGGAGCTCGCGTGGCCACAGCAGGTGAACGTCTTACTGGCGGGAGGCGGCTGAGCTGGTGCGCGTGCTCCGGGGTGTGGGTCAGCCATGCAGCTGGAGCCGGACCTTCGCCTGGCAGCTGTGGAGGATGAGCCGCAGTCCCTCTAACAGCTCGCAGGGCTCCGTTTACCCTGATGATGCCATTTCATCCCTCTCCAGCGAGGACGACTACCTCTGACTGGATCCGGCTGGACTCTGTGGGTCAGATCTGCTCACCTCCCGCCTCTCAAATACTGAATCTGACCCAGAAAGACAAACTATGATGCTGAGGCATTGCAAGATTACTGTTCTCTTGTGTATGCAAGTGACCTGCAGGGGCTACCAGACTTCAGTACTTGTATATTGCTACACTTATTACAATTAAGTGATAAATAGTAATTGTTTATGTATGTACATGCTGACCATAGTGATGCATTTATTTGTAAAGATTGTCCCAGATATTCATCTCATAAGAACAGTGTTTGTTACTTTCAGCTGAAGTTACAGTAAGTGCTGCTCTGCGAAATAGCCATCAGGCATAATGATGAACTGTTCATATAGTAGCAGTATTACTATAGTCTTtgcaacagcagaaacaaactCAAGCCCAGAGAAAAAGGCATAAAAGCTATAATCTTGAGTTCTGAGTTCTCAGCAGTACCATATGTTTCAACAGTAATTCACTCCTGATGAAGCACACGCTACAGTCTGTttagaggggggaaaaaatctacaTTGTACAGGGcaaaaaagtgtacaaaatgtCACTTTGGAGACCACTAATTCATATGACATCACACTTCCATATATAACTGAGCACAGAAGTTTATACACCCATTGGTTTATgggtaaataaagtaaaatatacttaaacttaaaaaaaggaattgcAAGAAGTtaaaagtgaatgtgtgtgtatcctacaAGCCAACCTGAGAGGATCTAAAAGCTGTTCACAGGATATGAAAGAGGTTGGAGGCAGTTCAAACAAGTTATTAGAAATCATTTCTATCACATTTTGCATGCAAAATTTAAAActgataataatttaatttttccaCAGTGAATATCTCAGCATAAACTATTTGACAAACTTTTGTTTCTTGTGATTTTGAAGGAGGCGTAGGAAAATAAATGGATGTAAGTAtagtatgtaaatgtttttataaggTTTTGATTTAAGGTTTTCAGCACTGGCAATGTAAACTGATTGGAACTCAATTTTGTATGAGCGATTTTGAAAGccttaactttttatttttttt

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0008152 metabolic process biological_process
GO:0060122 inner ear receptor cell stereocilium organization biological_process
GO:0035315 hair cell differentiation biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG:

id description
K10359 MYO7A, USH1B; myosin VIIa

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122741 lncRNA downstream 125592 23329676 ~ 23330101 (-) True G103727
TU122733 lncRNA downstream 132281 23321663 ~ 23323412 (-) True G103719
TU122712 lncRNA downstream 180411 23270144 ~ 23275282 (-) True G103702
TU122600 lncRNA downstream 192610 23262807 ~ 23263083 (-) True G103600
TU122573 lncRNA downstream 196505 23219022 ~ 23259188 (-) True G103576
TU122845 lncRNA upstream 13651 23512157 ~ 23513328 (-) True G103817
TU122848 lncRNA upstream 74083 23572589 ~ 23575679 (-) True G103820
TU123026 lncRNA upstream 150178 23648684 ~ 23699689 (-) False rnpepl1
TU123014 lncRNA upstream 234364 23732870 ~ 23738739 (-) True rpl35a
TU123018 lncRNA upstream 234364 23732870 ~ 23738739 (-) False rpl35a
XM_026913338.2 mRNA downstream 115312 23334177 ~ 23340381 (-) True aqp11
XM_026914031.2 mRNA downstream 156683 23297355 ~ 23299010 (-) True aamdc
XM_026914029.2 mRNA downstream 156709 23297364 ~ 23298984 (-) False aamdc
XM_026914213.2 mRNA downstream 293384 23158732 ~ 23162309 (-) True LOC113526825
XM_026914311.2 mRNA downstream 302044 23150108 ~ 23153649 (-) True LOC113526884
XM_026913998.2 mRNA upstream 14887 23513393 ~ 23535680 (-) True capn5a
XM_034304937.1 mRNA upstream 48886 23547392 ~ 23554751 (-) False dcun1d5
XM_026913335.2 mRNA upstream 48928 23547434 ~ 23557534 (-) True dcun1d5
XM_026914466.2 mRNA upstream 60617 23559123 ~ 23571022 (-) True eif2a
XM_026913977.2 mRNA upstream 79533 23578039 ~ 23582080 (-) False mtif2
XR_004578321.1 other downstream 1148924 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 2442593 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 2488783 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 3475434 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 4104750 19350762 ~ 19350943 (-) True LOC113527011
XR_004578330.1 other upstream 92439 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 1125010 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 1254106 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 1886819 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 1886819 25385325 ~ 25548928 (-) True si:cabz01090165.1

Expression Profile