RNA id: TU155899


Basic Information

Item Value
RNA id TU155899
length 209
lncRNA type intronic
GC content 0.43
exon number 1
gene id G131956
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13317298 ~ 13317506 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatggcctctacatttctgctctcaaagtcttctgtGAATGGAtatcttcacccctgccctgtggaggtttttggtgatgtcactgactgttgtttttgagtttttcttcacagctctcacaaggtttctgtcatcaactgctgttgttttccttggctgacctgttccatgtctggttgttagtacaccagtggtttcttactttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155897 lncRNA upstream 1635 13315443 ~ 13315663 (+) True G131954
TU155870 lncRNA upstream 42203 13274135 ~ 13275095 (+) True G131930
TU155597 lncRNA upstream 293452 13022216 ~ 13023846 (+) True G131715
TU155603 lncRNA upstream 311208 13003395 ~ 13006090 (+) False G131721
TU155905 lncRNA downstream 7998 13325504 ~ 13325713 (+) True G131962
TU155912 lncRNA downstream 48374 13365880 ~ 13368176 (+) True G131968
TU155919 lncRNA downstream 75019 13392525 ~ 13400280 (+) True G131972
TU155931 lncRNA downstream 103199 13420705 ~ 13422214 (+) True G131980
TU155938 lncRNA downstream 116411 13433917 ~ 13435294 (+) True G131987
XM_026929521.2 mRNA upstream 91979 13214466 ~ 13225319 (+) True gpr173
XM_026930223.2 mRNA upstream 172091 13136689 ~ 13145207 (+) True wasb
XM_034306692.1 mRNA upstream 182669 13113706 ~ 13134629 (+) True slc38a5b
XM_026917085.2 mRNA upstream 182669 13113706 ~ 13134629 (+) False slc38a5b
XM_026926775.2 mRNA upstream 255860 13055488 ~ 13061438 (+) True LOC113534124
XM_034306953.1 mRNA downstream 54986 13372492 ~ 13386385 (+) True tpd52l2a
XM_026926458.2 mRNA downstream 54986 13372492 ~ 13386385 (+) False tpd52l2a
XM_034306954.1 mRNA downstream 54986 13372492 ~ 13386385 (+) False tpd52l2a
XM_026926468.2 mRNA downstream 54986 13372492 ~ 13386385 (+) False tpd52l2a
XM_034306955.1 mRNA downstream 54986 13372492 ~ 13386385 (+) False tpd52l2a
trnaf-gaa_25 other upstream 253176 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 255290 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 935228 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1606753 11709454 ~ 11710545 (+) False porcn
TU154760 other upstream 1609337 11705655 ~ 11707961 (+) False porcn
trnae-cuc_18 other downstream 52042 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 387750 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 1004666 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 1662327 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 2684555 16002061 ~ 16011604 (+) False G133631

Expression Profile